HHsearch results for GI: 254780832 and protein with PDBid: 3gia_A
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.70 E-value=3.7e-11 Score=88.83 Aligned_cols=310 Identities=14% Similarity=0.078 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999988741078998138999999987267554257789999999996500346999999987246642736
Q gi|254780832|r 67 WVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPE 146 (628)
Q Consensus 67 Wtl~liv~vKYv~~~l~adn~GEGGi~aL~sl~~~~~~~~~~~~~~~gligaa~ll~D~iLTpAISVlSavegl~~~~P~ 146 (628)
..+.+.+..-|..+..+-. .+||.. +-.++..+++ ..+...+-.....++...+.......+.+....+.
T Consensus 49 ~~~~~~~~l~~~el~~~~p--~~GG~y---~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (444)
T 3gia_A 49 GIYALLVAYSYTKLGAKIV--SNAGPI---AFIHKAIGDN-----IITGALSILLWMSYVISIALFAKGFAGYFLPLINA 118 (444)
T ss_dssp HHHHHHHHHHHHHHHTTCC--CTTTHH---HHHHHHHCSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHCC--CCCCHH---HHHHHHHCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999999647--997199---9999996818-----89999999999999888999999999986101468
Q ss_pred CC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CC-CCCCCCHHHHHHHHHHCCHHH
Q ss_conf 67-6-12899999999999750001899999845999999999999999865018-74-444679689999998374358
Q gi|254780832|r 147 LD-N-FIILIALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISDD-WG-ILAAFNPMYALHMVFGKGTIS 222 (628)
Q Consensus 147 l~-~-~~v~iai~il~~Lf~iq~rGt~~~g~~F~pi~~lwf~~i~~~gi~~i~~~-p~-vl~a~~P~~~~~~~~~~~~~g 222 (628)
.. . ....++++++.++..+|.+|++..++.....+.+.+..++...+.++... +. .....+|.-.. .-
T Consensus 119 ~~~~~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 190 (444)
T 3gia_A 119 PINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVS--------GM 190 (444)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHH--------HH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCHH--------HH
T ss_conf 8641689999999999999999862579876679999987562367642342223665456677887378--------99
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHH-HHC-CHHH----HHHHH----HHHCCC
Q ss_conf 9999899998510878743645467116--9999999999999999747868-735-9245----52036----872786
Q gi|254780832|r 223 LVVLGSVFLTITGAEALYADLGHFGRKP--IQYAWMVIFPALAINYLGQGAL-VLS-NPEA----IKDPF----YMMFGG 290 (628)
Q Consensus 223 ~~~lg~v~La~TG~EAl~advghF~~~~--i~~aw~~v~~~L~l~y~Gq~a~-ll~-~~~~----~~~~f----~~~~p~ 290 (628)
+.+++..+.+.+|.|+..+..+..++|. +..+.........+.|..-... ... .++. .+++. ....++
T Consensus 191 ~~~~~~~~~~~~G~e~~~~~~~e~k~p~k~~p~a~~~~~~i~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 270 (444)
T 3gia_A 191 IFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGN 270 (444)
T ss_dssp HHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHCCC
T ss_conf 99999999996486323113211013200178899999999999889999999861440655326630245666664010
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 32899999999999996030100258999999975998865687038876571100689999999988877732688898
Q gi|254780832|r 291 WFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESL 370 (628)
Q Consensus 291 ~~~~~~v~~at~a~iIaSqa~isg~Fsl~~qai~l~~~Pr~~i~~tS~~~~gqiYip~In~ll~ia~i~lvl~f~~s~~L 370 (628)
+..+.+.+.+.++.+-...+.+.+.-+++.++.++|.+|+.. ++. .+....+.+ ++..+.+++.. .+.+.+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f----~k~-~~~~~~~~~-~~~~~~~~~~~-~~~~~~~l 343 (444)
T 3gia_A 271 LGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFF----ERK-VWFKSTEGL-YITSALGVLFA-LLFNMEGV 343 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSC----CTT-SCCSCTHHH-HHHHHHHHHHH-HHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH----CCC-CCCCCCCHH-HHHHHHHHHHH-HHHHHHHH
T ss_conf 346767646877755789999887469999998749842987----205-899986199-99999999999-99869999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 87899999999999899999999983585699
Q gi|254780832|r 371 VAAYGISVSGTMVISTIMFSVFVHVCWKWKIS 402 (628)
Q Consensus 371 ~~aYgi~V~~tf~lTt~l~~~~~~~~~~~~~~ 402 (628)
...++.+..+.+++...-... .|++.+++.+
T Consensus 344 ~~~~~~~~~i~~~~~~~~~~~-l~~~~~~~~~ 374 (444)
T 3gia_A 344 ASITSAVFMVIYLFVILSHYI-LIDEVGGRKE 374 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-THHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCC
T ss_conf 999999999999999999999-9885277888