RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780832|ref|YP_003065245.1| putative potassium uptake
transport system protein [Candidatus Liberibacter asiaticus str.
psy62]
         (628 letters)



>gnl|CDD|32972 COG3158, Kup, K+ transporter [Inorganic ion transport and
           metabolism].
          Length = 627

 Score =  745 bits (1926), Expect = 0.0
 Identities = 328/630 (52%), Positives = 435/630 (69%), Gaps = 5/630 (0%)

Query: 1   MNTQTEDLQKNSPNPFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIG 60
           M +          +   L   +IGVVYGDIGTS LYA +EAL        L V R EV+G
Sbjct: 1   MGSAEAMSTSFKKSTKALTLGAIGVVYGDIGTSPLYALREALS---GQGGLGVSRDEVLG 57

Query: 61  LVSLMIWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSAL 120
           ++SL+IW LT++VTIKY+L +LRADN+GEGGILSL+AL  +  P+R+ +LI LGL G+AL
Sbjct: 58  VLSLIIWTLTLIVTIKYVLFVLRADNNGEGGILSLMALARRAAPRRTALLIILGLIGAAL 117

Query: 121 FIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACFFSPI 180
           F GD+++TPA+SVLSAVEG+  + P LD +++ I L ILVLLF++Q  GT  V   F P+
Sbjct: 118 FYGDAVITPAISVLSAVEGLEIVTPALDPYVVPITLIILVLLFLIQRFGTGRVGKLFGPV 177

Query: 181 MVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAEALY 240
           M+ W L + V GLI+I DD  IL A NP YA+H +  +G +   VLG+VFL +TGAEALY
Sbjct: 178 MLLWFLALAVLGLINIIDDPEILRAINPYYAVHFLLEEGFVGFFVLGAVFLAVTGAEALY 237

Query: 241 ADLGHFGRKPIQYAWM-VIFPALAINYLGQGALVLSNPEAIKDPFYMMFGGWFLPFAVLT 299
           AD+GHFGRKPI+ AW  V+ P L +NY GQGAL+LSNPEAI +PF+++   W L   V+ 
Sbjct: 238 ADMGHFGRKPIRVAWFFVVLPCLLLNYFGQGALLLSNPEAIGNPFFLLAPDWALIPLVIL 297

Query: 300 ATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLL 359
           AT ATVIASQAVI+G FSL RQAI LG+LPRM+I  TSET  GQ+++P++N  L V V+ 
Sbjct: 298 ATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVF 357

Query: 360 FVIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIEMTFL 419
            V+GF  S +L AAYGI+V+GTMVI+TI+ +V +   WKW+   V + L   L+I++ F 
Sbjct: 358 VVLGFGSSSNLAAAYGIAVTGTMVITTILLTVVMRKKWKWRKWLVALILIVFLAIDILFF 417

Query: 420 GANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNLLSTLTRHADIPIHSFIISIENSS-QQ 478
            ANL K+ DGG+ PLL+A++   VMWTW+RG  +L   TR   IP+ +FI S+E     +
Sbjct: 418 AANLLKIHDGGWLPLLLAAVIFFVMWTWKRGRQILFEKTRENGIPLDAFIASLEKHPPVR 477

Query: 479 VPGTAIFLTSDSQAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEH 538
           VPGTA+FLT D   VP ALL N+KHN++LHE+N+ LT+ T + P +    R   E++S+ 
Sbjct: 478 VPGTAVFLTRDPDVVPRALLHNLKHNKVLHERNVFLTVRTEDVPYVHPTDRVKVEQLSDD 537

Query: 539 FSRVELFFGYMEEQNVSQALAELRNNGLKFEIMNTSFYLGRRKLVPTSRAGMPNWQDHLF 598
           F RV L FG+ME  NV +AL   R  GLKF+IM TSF+L R  L+ +  +GMP W+D LF
Sbjct: 538 FVRVVLHFGFMETPNVPRALRLCRKKGLKFDIMETSFFLSRESLIASKNSGMPRWRDRLF 597

Query: 599 IMLSTYAEDPSDYFHLPANRVVEIVSHVNI 628
           I L+  A  P+DYF LP NRVVE+ + V I
Sbjct: 598 IALARNAASPTDYFKLPPNRVVELGTQVEI 627


>gnl|CDD|145714 pfam02705, K_trans, K+ potassium transporter.  This is a family of
           K+ potassium transporters that are conserved across
           phyla, having both bacterial (KUP), yeast (HAK), and
           plant (AtKT) sequences as members.
          Length = 731

 Score =  450 bits (1159), Expect = e-127
 Identities = 193/579 (33%), Positives = 309/579 (53%), Gaps = 51/579 (8%)

Query: 18  LMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVTIKY 77
           L F+S+GVVYGDIGTS LY F       T +  +     +++G++SL+ W LT++   KY
Sbjct: 2   LAFQSLGVVYGDIGTSPLYVFSS-----TFSGGISHSEDDILGVLSLIFWTLTLIPLFKY 56

Query: 78  ILLLLRADNDGEGGILSLLALL-------------------------------------- 99
           + ++LRAD++GEGG  +L +LL                                      
Sbjct: 57  VFIVLRADDNGEGGTFALYSLLCRHAKVRLIPNQQETDEELSTYALTTPPELNFAAGLKS 116

Query: 100 -LKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELD-NFIILIALG 157
            L+K       L+ L L G+++ IGD ++TPA+SVLSAV G+  +AP L  N ++ ++  
Sbjct: 117 KLEKHKFLKKALLILVLLGTSMVIGDGVLTPAISVLSAVSGLEIVAPSLSTNAVVPVSCV 176

Query: 158 ILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHI-SDDWGILAAFNPMYALHMVF 216
           ILVLLF +Q  GT  V   F+PI++ WLL I   G+ +I   D  +L A +P YA+    
Sbjct: 177 ILVLLFSIQHFGTDKVGFLFAPIVLLWLLSIAGIGIYNIVKFDPTVLKALSPYYAVQFFK 236

Query: 217 GKGTISLVVLGSVFLTITGAEALYADLGHFGRKPIQYAWM-VIFPALAINYLGQGALVLS 275
             GT   + LG + L+ITG EA++ADLGHF    IQ A+   ++P L + Y+GQ A +  
Sbjct: 237 ETGTDGWISLGGILLSITGVEAMFADLGHFSLLAIQLAFTFFVYPCLILAYMGQAAYLSK 296

Query: 276 NPEAIKDPFYMMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFF 335
           +PEA  +PFY     W      + AT A ++ASQA+I+GTFS+  QA+ LG  PR+KI  
Sbjct: 297 HPEAYANPFYRSIPDWLYWPVFIIATLAAIVASQAMISGTFSIISQAVALGCFPRVKIIH 356

Query: 336 TSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHV 395
           TS+ F GQ+++P IN  L +G +    GFR + +L  AYG++V+G M+++T + ++ + +
Sbjct: 357 TSKKFHGQIYIPEINWLLMIGCIAVTAGFRDTSNLGNAYGLAVTGVMLVTTCLMTLVMLL 416

Query: 396 CWKWKISKVIIFLFPLLSIEMTFLGANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNLLS 455
            W W I  V++FL    S+E+ +  ANL K+L+GG+ PL+++ + ++VM  W  GT    
Sbjct: 417 VWHWNIILVLLFLLIFGSVELLYFSANLIKILEGGWVPLVLSGIFMLVMSVWHYGTVRKY 476

Query: 456 TLTRHADIPIHSFIISIENSS-QQVPGTAIFLTSDSQAVPDALLQNIKHNRILHEQNIIL 514
                  + +   +         +VPG  +  T     +P      + +   +H   + +
Sbjct: 477 EFEVEHRVSMSWLLALGPKLGLVRVPGIGLVYTELVSGIPAIFSHFVTNLPAIHSVVVFV 536

Query: 515 TINTANQPRIPKEKRFVCEKISE---HFSRVELFFGYME 550
            + +   P +P E+RF+  ++        R    +GY +
Sbjct: 537 CVKSVPVPTVPPEERFLVSRVGPKEFRMFRCVARYGYRD 575


>gnl|CDD|36043 KOG0825, KOG0825, KOG0825, PHD Zn-finger protein [General function
           prediction only].
          Length = 1134

 Score = 34.0 bits (77), Expect = 0.13
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 16/126 (12%)

Query: 491 QAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEHFSRVELFFGYME 550
           Q   + LL+N K  + L E+N  LT      PR  +  +   ++I +HFS        M 
Sbjct: 337 QDSENNLLKNTKLEKSLEEKNESLT----EHPRSTELPKRHVQQIQKHFSEDN---NEMI 389

Query: 551 EQNVSQALAELRNNGLKFEIMNTSFYLGRRKLVPTSRAGMPNWQDHLFIMLSTYAEDPSD 610
                   ++   + ++  I      + R  +   S   MP+         S  A++  +
Sbjct: 390 PMECDSFCSDQNESEVEPSINADRKQMNRNSVTHCSENNMPS---------SDLADEKVE 440

Query: 611 YFHLPA 616
               P+
Sbjct: 441 TVSQPS 446


>gnl|CDD|73348 cd03327, MR_like_2, Mandelate racemase (MR)-like subfamily of the
           enolase superfamily, subgroup 2. Enzymes of this
           subgroup share three conserved carboxylate ligands for
           the essential divalent metal ion (usually Mg2+), two
           aspartates and a glutamate, and conserved catalytic
           residues,  a Lys-X-Lys motif and a conserved
           histidine-aspartate dyad. This subgroup's function is
           unknown..
          Length = 341

 Score = 31.0 bits (70), Expect = 1.1
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 13/117 (11%)

Query: 167 SHGTKGVACFFSPIMVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVFGKGTISLVVL 226
             GT G A      +  W++   ++  +   D   I   ++ MY   + +G+  I++  +
Sbjct: 19  DDGTVGYANTTGGPVACWIVDQHLARFLIGKDPSDIEKLWDQMYRATLAYGRKGIAMAAI 78

Query: 227 GSVFLTITGA------EALYADLGHFGRKPIQ-------YAWMVIFPALAINYLGQG 270
            +V L +         E +Y  LG   R  I           +   P  A  YL +G
Sbjct: 79  SAVDLALWDLLGKIRGEPVYKLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYLKEG 135


>gnl|CDD|36695 KOG1482, KOG1482, KOG1482, Zn2+ transporter [Inorganic ion
           transport and metabolism].
          Length = 379

 Score = 30.7 bits (69), Expect = 1.3
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 35  LYAFKEALKTTTMNHTLLVERTEVIG-LVS-LMIWVLTIVVTIKYILLLLRADNDGEGGI 92
           L++   + +  T   +    R EV+G LVS L+IWV+T V+  + I  LL  D +  GGI
Sbjct: 119 LFSLWLSSRPATKRMSFGFHRAEVLGALVSVLLIWVVTGVLVYEAIQRLLSGDYEVNGGI 178

Query: 93  LSLLA 97
           + + A
Sbjct: 179 MLITA 183


>gnl|CDD|153334 cd07650, F-BAR_Syp1p_like, The F-BAR (FES-CIP4 Homology and
           Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein.
           F-BAR domains are dimerization modules that bind and
           bend membranes and are found in proteins involved in
           membrane dynamics and actin reorganization. Syp1p is
           associated with septins, a family of GTP-binding
           proteins that serve as elements of septin filaments,
           which are required for cell morphogenesis and division.
           Syp1p regulates cell-cycle dependent septin cytoskeletal
           dynamics in yeast. It contains an N-terminal F-BAR
           domain and a C-terminal domain of unknown function named
           SAFF which is also present in FCH domain Only (FCHO)
           proteins and endophilin interacting protein 1. F-BAR
           domains form banana-shaped dimers with a
           positively-charged concave surface that binds to
           negatively-charged lipid membranes. They can induce
           membrane deformation in the form of long tubules.
          Length = 228

 Score = 30.0 bits (68), Expect = 2.3
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 489 DSQAVPDA--LLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEHFSRVE 543
           DSQA P    LLQ I   R+ H ++++L   T       +      E+        +
Sbjct: 156 DSQA-PFLFELLQAIDEERLNHLKDVLLQFQTHESDYALRTTES-AEECMNQLLEFD 210


>gnl|CDD|37203 KOG1992, KOG1992, KOG1992, Nuclear export receptor CSE1/CAS
           (importin beta superfamily) [Nuclear structure,
           Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 960

 Score = 29.9 bits (67), Expect = 2.4
 Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 23/201 (11%)

Query: 5   TEDLQKNSPNP-----FYLMFESIGVVY---GDIGTSVLYAFKEALKTTTMNHTLLVERT 56
           TE +++ S NP      + +FESIG++         S + + +EAL        L  +  
Sbjct: 595 TEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQT-ILSEDIQ 653

Query: 57  EVIGLVSLMIWVL------TIVVTIKYILLLLRADN--DGEGGILSLLALLLKKIPKRST 108
           E I  V  ++ VL      TI  +   +   L + N     G I +L+ LL   +   S 
Sbjct: 654 EFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQ 713

Query: 109 VLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIAL-GILVLLFM-LQ 166
           ++ A       L I   ++    +       +  I   +    +   +  I  LLF  LQ
Sbjct: 714 IVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQ 773

Query: 167 SHGT----KGVACFFSPIMVA 183
           +  T    K    FFS   + 
Sbjct: 774 NSKTEKFVKSFIVFFSLFTIK 794


>gnl|CDD|31790 COG1602, COG1602, Uncharacterized conserved protein [Function
           unknown].
          Length = 402

 Score = 29.1 bits (65), Expect = 3.6
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 22/77 (28%)

Query: 515 TINTANQPRIPKEKRFVCEKISEHFSRVELFFGYMEEQNVSQALAELRNNGLKFEIMNTS 574
            +  A  P++P++     EK+            Y ++    +A+ EL   G+    +  +
Sbjct: 159 NLELAGNPKVPRK----VEKV------------YYDDLKAEEAVVELYRRGVDVYYIQRA 202

Query: 575 FYLG------RRKLVPT 585
             +G      RR+LVPT
Sbjct: 203 LSVGLLGLGKRRRLVPT 219


>gnl|CDD|36492 KOG1278, KOG1278, KOG1278, Endosomal membrane proteins, EMP70
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 628

 Score = 29.0 bits (65), Expect = 3.6
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 283 PFYMMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKG 342
            FY MFG  FL F +L  TCA +    +++   F L  +  +       + F TS +   
Sbjct: 515 QFYYMFGFLFLVFIILVVTCAEI----SIVLTYFQLCAEDYNW----WWRSFLTSGSSAV 566

Query: 343 QVFLPSINLFLFV 355
            VF+ SI  F   
Sbjct: 567 YVFIYSIFYFFTK 579


>gnl|CDD|34396 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General
           function prediction only].
          Length = 297

 Score = 28.8 bits (64), Expect = 4.8
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 542 VELFFGYMEEQNVSQAL-AELRNNGLKFEIMN-TSFYLGRRKL 582
           VE + G + E+ + + L A+  +N    E +  T FYLG+  L
Sbjct: 206 VEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248


>gnl|CDD|31233 COG1030, NfeD, Membrane-bound serine protease (ClpP class)
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 436

 Score = 28.3 bits (63), Expect = 6.8
 Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 22/99 (22%)

Query: 152 ILIALGILVLLFMLQSHG-----TKGVACF--------FSPIMVAWLLMITVSGLIHISD 198
           IL+ LG L L+F L S G       G            F  I  A LL+I + G I I  
Sbjct: 239 ILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIIL-GAILI-- 295

Query: 199 DWGILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAE 237
              +  AF P +    V G   I L ++G + L  +G  
Sbjct: 296 ---VAEAFVPGFG---VIGLLGIILFIIGLLLLFPSGTM 328


>gnl|CDD|144482 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
           cryoelectron microscopy indicates that VP5 is a trimer
           implying that there are 360 copies of VP5 per virion.
          Length = 508

 Score = 28.1 bits (63), Expect = 6.9
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 485 FLTSDSQAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEH 538
            L   +  +PDA L     +++ H +     +   N+  +PK K+   E+  E 
Sbjct: 280 LLEKPTDVIPDASLAVAVSSKLRHVEENKNEVEHLNEEILPKIKK-AAEEDKEI 332


>gnl|CDD|176710 cd08362, BphC5-RrK37_N_like, N-terminal, non-catalytic, domain of
           BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from
           Rhodococcus rhodochrous K37, and similar proteins.
           2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes
           the extradiol ring cleavage reaction of
           2,3-dihydroxybiphenyl, the third step in the
           polychlorinated biphenyls (PCBs) degradation pathway
           (bph pathway). The enzyme contains a N-terminal and a
           C-terminal domain of similar structure fold, resulting
           from an ancient gene duplication. BphC belongs to the
           type I extradiol dioxygenase family, which requires a
           metal in the active site for its catalytic activity.
           Polychlorinated biphenyl degrading bacteria demonstrate
           multiplicity of BphCs. Bacterium Rhodococcus rhodochrous
           K37 has eight genes encoding BphC enzymes. This family
           includes the N-terminal domain of BphC5-RrK37. The
           crystal structure of the protein from Novosphingobium
           aromaticivorans has a Mn(II)in the active site, although
           most proteins of type I extradiol dioxygenases are
           activated by Fe(II).
          Length = 120

 Score = 28.1 bits (63), Expect = 8.2
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 227 GSVFLTITGAEALYADLGHFGRKPIQY-AWMVI----FPALAINYLGQGALVLSNPEAIK 281
           G V+L  TG+E     L    R  +   ++ V       ALA     +G  VLS P A  
Sbjct: 35  GIVYLRATGSEHHILRLRRSDRNRLDVVSFSVASRADVDALARQVAARGGTVLSEPGATD 94

Query: 282 DP 283
           DP
Sbjct: 95  DP 96


>gnl|CDD|35209 COG5650, COG5650, Predicted integral membrane protein [Function
           unknown].
          Length = 536

 Score = 27.6 bits (61), Expect = 9.8
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 4/122 (3%)

Query: 65  MIWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGD 124
             + +   +     LL++     G  G   L   L+   P     +  +     A F+  
Sbjct: 169 PFFKVLAFLLALIWLLVIYFIRKGLAGSRVLDVALVAASPLVGFAVFTVFDTIWAFFLAA 228

Query: 125 SMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACFFSPIMVAW 184
           ++V      L+ V      A +    I+L  L    L  + + +G +    F +   + W
Sbjct: 229 ALVCRGRPKLAGVLIGLSSAFKQIPLIVLPPL----LYLIYKEYGLRPAIKFIATAAITW 284

Query: 185 LL 186
           LL
Sbjct: 285 LL 286


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.327    0.141    0.422 

Gapped
Lambda     K      H
   0.267   0.0741    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,660,564
Number of extensions: 434590
Number of successful extensions: 1744
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1714
Number of HSP's successfully gapped: 177
Length of query: 628
Length of database: 6,263,737
Length adjustment: 100
Effective length of query: 528
Effective length of database: 4,102,837
Effective search space: 2166297936
Effective search space used: 2166297936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (26.9 bits)