RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus Liberibacter asiaticus str. psy62] (628 letters) >gnl|CDD|32972 COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism]. Length = 627 Score = 745 bits (1926), Expect = 0.0 Identities = 328/630 (52%), Positives = 435/630 (69%), Gaps = 5/630 (0%) Query: 1 MNTQTEDLQKNSPNPFYLMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIG 60 M + + L +IGVVYGDIGTS LYA +EAL L V R EV+G Sbjct: 1 MGSAEAMSTSFKKSTKALTLGAIGVVYGDIGTSPLYALREALS---GQGGLGVSRDEVLG 57 Query: 61 LVSLMIWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSAL 120 ++SL+IW LT++VTIKY+L +LRADN+GEGGILSL+AL + P+R+ +LI LGL G+AL Sbjct: 58 VLSLIIWTLTLIVTIKYVLFVLRADNNGEGGILSLMALARRAAPRRTALLIILGLIGAAL 117 Query: 121 FIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACFFSPI 180 F GD+++TPA+SVLSAVEG+ + P LD +++ I L ILVLLF++Q GT V F P+ Sbjct: 118 FYGDAVITPAISVLSAVEGLEIVTPALDPYVVPITLIILVLLFLIQRFGTGRVGKLFGPV 177 Query: 181 MVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAEALY 240 M+ W L + V GLI+I DD IL A NP YA+H + +G + VLG+VFL +TGAEALY Sbjct: 178 MLLWFLALAVLGLINIIDDPEILRAINPYYAVHFLLEEGFVGFFVLGAVFLAVTGAEALY 237 Query: 241 ADLGHFGRKPIQYAWM-VIFPALAINYLGQGALVLSNPEAIKDPFYMMFGGWFLPFAVLT 299 AD+GHFGRKPI+ AW V+ P L +NY GQGAL+LSNPEAI +PF+++ W L V+ Sbjct: 238 ADMGHFGRKPIRVAWFFVVLPCLLLNYFGQGALLLSNPEAIGNPFFLLAPDWALIPLVIL 297 Query: 300 ATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLL 359 AT ATVIASQAVI+G FSL RQAI LG+LPRM+I TSET GQ+++P++N L V V+ Sbjct: 298 ATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVF 357 Query: 360 FVIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIEMTFL 419 V+GF S +L AAYGI+V+GTMVI+TI+ +V + WKW+ V + L L+I++ F Sbjct: 358 VVLGFGSSSNLAAAYGIAVTGTMVITTILLTVVMRKKWKWRKWLVALILIVFLAIDILFF 417 Query: 420 GANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNLLSTLTRHADIPIHSFIISIENSS-QQ 478 ANL K+ DGG+ PLL+A++ VMWTW+RG +L TR IP+ +FI S+E + Sbjct: 418 AANLLKIHDGGWLPLLLAAVIFFVMWTWKRGRQILFEKTRENGIPLDAFIASLEKHPPVR 477 Query: 479 VPGTAIFLTSDSQAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEH 538 VPGTA+FLT D VP ALL N+KHN++LHE+N+ LT+ T + P + R E++S+ Sbjct: 478 VPGTAVFLTRDPDVVPRALLHNLKHNKVLHERNVFLTVRTEDVPYVHPTDRVKVEQLSDD 537 Query: 539 FSRVELFFGYMEEQNVSQALAELRNNGLKFEIMNTSFYLGRRKLVPTSRAGMPNWQDHLF 598 F RV L FG+ME NV +AL R GLKF+IM TSF+L R L+ + +GMP W+D LF Sbjct: 538 FVRVVLHFGFMETPNVPRALRLCRKKGLKFDIMETSFFLSRESLIASKNSGMPRWRDRLF 597 Query: 599 IMLSTYAEDPSDYFHLPANRVVEIVSHVNI 628 I L+ A P+DYF LP NRVVE+ + V I Sbjct: 598 IALARNAASPTDYFKLPPNRVVELGTQVEI 627 >gnl|CDD|145714 pfam02705, K_trans, K+ potassium transporter. This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP), yeast (HAK), and plant (AtKT) sequences as members. Length = 731 Score = 450 bits (1159), Expect = e-127 Identities = 193/579 (33%), Positives = 309/579 (53%), Gaps = 51/579 (8%) Query: 18 LMFESIGVVYGDIGTSVLYAFKEALKTTTMNHTLLVERTEVIGLVSLMIWVLTIVVTIKY 77 L F+S+GVVYGDIGTS LY F T + + +++G++SL+ W LT++ KY Sbjct: 2 LAFQSLGVVYGDIGTSPLYVFSS-----TFSGGISHSEDDILGVLSLIFWTLTLIPLFKY 56 Query: 78 ILLLLRADNDGEGGILSLLALL-------------------------------------- 99 + ++LRAD++GEGG +L +LL Sbjct: 57 VFIVLRADDNGEGGTFALYSLLCRHAKVRLIPNQQETDEELSTYALTTPPELNFAAGLKS 116 Query: 100 -LKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELD-NFIILIALG 157 L+K L+ L L G+++ IGD ++TPA+SVLSAV G+ +AP L N ++ ++ Sbjct: 117 KLEKHKFLKKALLILVLLGTSMVIGDGVLTPAISVLSAVSGLEIVAPSLSTNAVVPVSCV 176 Query: 158 ILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHI-SDDWGILAAFNPMYALHMVF 216 ILVLLF +Q GT V F+PI++ WLL I G+ +I D +L A +P YA+ Sbjct: 177 ILVLLFSIQHFGTDKVGFLFAPIVLLWLLSIAGIGIYNIVKFDPTVLKALSPYYAVQFFK 236 Query: 217 GKGTISLVVLGSVFLTITGAEALYADLGHFGRKPIQYAWM-VIFPALAINYLGQGALVLS 275 GT + LG + L+ITG EA++ADLGHF IQ A+ ++P L + Y+GQ A + Sbjct: 237 ETGTDGWISLGGILLSITGVEAMFADLGHFSLLAIQLAFTFFVYPCLILAYMGQAAYLSK 296 Query: 276 NPEAIKDPFYMMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFF 335 +PEA +PFY W + AT A ++ASQA+I+GTFS+ QA+ LG PR+KI Sbjct: 297 HPEAYANPFYRSIPDWLYWPVFIIATLAAIVASQAMISGTFSIISQAVALGCFPRVKIIH 356 Query: 336 TSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHV 395 TS+ F GQ+++P IN L +G + GFR + +L AYG++V+G M+++T + ++ + + Sbjct: 357 TSKKFHGQIYIPEINWLLMIGCIAVTAGFRDTSNLGNAYGLAVTGVMLVTTCLMTLVMLL 416 Query: 396 CWKWKISKVIIFLFPLLSIEMTFLGANLFKVLDGGYTPLLIASLCIIVMWTWRRGTNLLS 455 W W I V++FL S+E+ + ANL K+L+GG+ PL+++ + ++VM W GT Sbjct: 417 VWHWNIILVLLFLLIFGSVELLYFSANLIKILEGGWVPLVLSGIFMLVMSVWHYGTVRKY 476 Query: 456 TLTRHADIPIHSFIISIENSS-QQVPGTAIFLTSDSQAVPDALLQNIKHNRILHEQNIIL 514 + + + +VPG + T +P + + +H + + Sbjct: 477 EFEVEHRVSMSWLLALGPKLGLVRVPGIGLVYTELVSGIPAIFSHFVTNLPAIHSVVVFV 536 Query: 515 TINTANQPRIPKEKRFVCEKISE---HFSRVELFFGYME 550 + + P +P E+RF+ ++ R +GY + Sbjct: 537 CVKSVPVPTVPPEERFLVSRVGPKEFRMFRCVARYGYRD 575 >gnl|CDD|36043 KOG0825, KOG0825, KOG0825, PHD Zn-finger protein [General function prediction only]. Length = 1134 Score = 34.0 bits (77), Expect = 0.13 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 16/126 (12%) Query: 491 QAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEHFSRVELFFGYME 550 Q + LL+N K + L E+N LT PR + + ++I +HFS M Sbjct: 337 QDSENNLLKNTKLEKSLEEKNESLT----EHPRSTELPKRHVQQIQKHFSEDN---NEMI 389 Query: 551 EQNVSQALAELRNNGLKFEIMNTSFYLGRRKLVPTSRAGMPNWQDHLFIMLSTYAEDPSD 610 ++ + ++ I + R + S MP+ S A++ + Sbjct: 390 PMECDSFCSDQNESEVEPSINADRKQMNRNSVTHCSENNMPS---------SDLADEKVE 440 Query: 611 YFHLPA 616 P+ Sbjct: 441 TVSQPS 446 >gnl|CDD|73348 cd03327, MR_like_2, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.. Length = 341 Score = 31.0 bits (70), Expect = 1.1 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 13/117 (11%) Query: 167 SHGTKGVACFFSPIMVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVFGKGTISLVVL 226 GT G A + W++ ++ + D I ++ MY + +G+ I++ + Sbjct: 19 DDGTVGYANTTGGPVACWIVDQHLARFLIGKDPSDIEKLWDQMYRATLAYGRKGIAMAAI 78 Query: 227 GSVFLTITGA------EALYADLGHFGRKPIQ-------YAWMVIFPALAINYLGQG 270 +V L + E +Y LG R I + P A YL +G Sbjct: 79 SAVDLALWDLLGKIRGEPVYKLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYLKEG 135 >gnl|CDD|36695 KOG1482, KOG1482, KOG1482, Zn2+ transporter [Inorganic ion transport and metabolism]. Length = 379 Score = 30.7 bits (69), Expect = 1.3 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Query: 35 LYAFKEALKTTTMNHTLLVERTEVIG-LVS-LMIWVLTIVVTIKYILLLLRADNDGEGGI 92 L++ + + T + R EV+G LVS L+IWV+T V+ + I LL D + GGI Sbjct: 119 LFSLWLSSRPATKRMSFGFHRAEVLGALVSVLLIWVVTGVLVYEAIQRLLSGDYEVNGGI 178 Query: 93 LSLLA 97 + + A Sbjct: 179 MLITA 183 >gnl|CDD|153334 cd07650, F-BAR_Syp1p_like, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. Length = 228 Score = 30.0 bits (68), Expect = 2.3 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 4/57 (7%) Query: 489 DSQAVPDA--LLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEHFSRVE 543 DSQA P LLQ I R+ H ++++L T + E+ + Sbjct: 156 DSQA-PFLFELLQAIDEERLNHLKDVLLQFQTHESDYALRTTES-AEECMNQLLEFD 210 >gnl|CDD|37203 KOG1992, KOG1992, KOG1992, Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure, Intracellular trafficking, secretion, and vesicular transport]. Length = 960 Score = 29.9 bits (67), Expect = 2.4 Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 23/201 (11%) Query: 5 TEDLQKNSPNP-----FYLMFESIGVVY---GDIGTSVLYAFKEALKTTTMNHTLLVERT 56 TE +++ S NP + +FESIG++ S + + +EAL L + Sbjct: 595 TEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQT-ILSEDIQ 653 Query: 57 EVIGLVSLMIWVL------TIVVTIKYILLLLRADN--DGEGGILSLLALLLKKIPKRST 108 E I V ++ VL TI + + L + N G I +L+ LL + S Sbjct: 654 EFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQ 713 Query: 109 VLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIAL-GILVLLFM-LQ 166 ++ A L I ++ + + I + + + I LLF LQ Sbjct: 714 IVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQ 773 Query: 167 SHGT----KGVACFFSPIMVA 183 + T K FFS + Sbjct: 774 NSKTEKFVKSFIVFFSLFTIK 794 >gnl|CDD|31790 COG1602, COG1602, Uncharacterized conserved protein [Function unknown]. Length = 402 Score = 29.1 bits (65), Expect = 3.6 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 22/77 (28%) Query: 515 TINTANQPRIPKEKRFVCEKISEHFSRVELFFGYMEEQNVSQALAELRNNGLKFEIMNTS 574 + A P++P++ EK+ Y ++ +A+ EL G+ + + Sbjct: 159 NLELAGNPKVPRK----VEKV------------YYDDLKAEEAVVELYRRGVDVYYIQRA 202 Query: 575 FYLG------RRKLVPT 585 +G RR+LVPT Sbjct: 203 LSVGLLGLGKRRRLVPT 219 >gnl|CDD|36492 KOG1278, KOG1278, KOG1278, Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]. Length = 628 Score = 29.0 bits (65), Expect = 3.6 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 8/73 (10%) Query: 283 PFYMMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKG 342 FY MFG FL F +L TCA + +++ F L + + + F TS + Sbjct: 515 QFYYMFGFLFLVFIILVVTCAEI----SIVLTYFQLCAEDYNW----WWRSFLTSGSSAV 566 Query: 343 QVFLPSINLFLFV 355 VF+ SI F Sbjct: 567 YVFIYSIFYFFTK 579 >gnl|CDD|34396 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only]. Length = 297 Score = 28.8 bits (64), Expect = 4.8 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 542 VELFFGYMEEQNVSQAL-AELRNNGLKFEIMN-TSFYLGRRKL 582 VE + G + E+ + + L A+ +N E + T FYLG+ L Sbjct: 206 VEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 >gnl|CDD|31233 COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]. Length = 436 Score = 28.3 bits (63), Expect = 6.8 Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 22/99 (22%) Query: 152 ILIALGILVLLFMLQSHG-----TKGVACF--------FSPIMVAWLLMITVSGLIHISD 198 IL+ LG L L+F L S G G F I A LL+I + G I I Sbjct: 239 ILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIIL-GAILI-- 295 Query: 199 DWGILAAFNPMYALHMVFGKGTISLVVLGSVFLTITGAE 237 + AF P + V G I L ++G + L +G Sbjct: 296 ---VAEAFVPGFG---VIGLLGIILFIIGLLLLFPSGTM 328 >gnl|CDD|144482 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5. cryoelectron microscopy indicates that VP5 is a trimer implying that there are 360 copies of VP5 per virion. Length = 508 Score = 28.1 bits (63), Expect = 6.9 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 485 FLTSDSQAVPDALLQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEH 538 L + +PDA L +++ H + + N+ +PK K+ E+ E Sbjct: 280 LLEKPTDVIPDASLAVAVSSKLRHVEENKNEVEHLNEEILPKIKK-AAEEDKEI 332 >gnl|CDD|176710 cd08362, BphC5-RrK37_N_like, N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxygenases are activated by Fe(II). Length = 120 Score = 28.1 bits (63), Expect = 8.2 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 5/62 (8%) Query: 227 GSVFLTITGAEALYADLGHFGRKPIQY-AWMVI----FPALAINYLGQGALVLSNPEAIK 281 G V+L TG+E L R + ++ V ALA +G VLS P A Sbjct: 35 GIVYLRATGSEHHILRLRRSDRNRLDVVSFSVASRADVDALARQVAARGGTVLSEPGATD 94 Query: 282 DP 283 DP Sbjct: 95 DP 96 >gnl|CDD|35209 COG5650, COG5650, Predicted integral membrane protein [Function unknown]. Length = 536 Score = 27.6 bits (61), Expect = 9.8 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 4/122 (3%) Query: 65 MIWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRSTVLIALGLAGSALFIGD 124 + + + LL++ G G L L+ P + + A F+ Sbjct: 169 PFFKVLAFLLALIWLLVIYFIRKGLAGSRVLDVALVAASPLVGFAVFTVFDTIWAFFLAA 228 Query: 125 SMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGVACFFSPIMVAW 184 ++V L+ V A + I+L L L + + +G + F + + W Sbjct: 229 ALVCRGRPKLAGVLIGLSSAFKQIPLIVLPPL----LYLIYKEYGLRPAIKFIATAAITW 284 Query: 185 LL 186 LL Sbjct: 285 LL 286 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.327 0.141 0.422 Gapped Lambda K H 0.267 0.0741 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 7,660,564 Number of extensions: 434590 Number of successful extensions: 1744 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1714 Number of HSP's successfully gapped: 177 Length of query: 628 Length of database: 6,263,737 Length adjustment: 100 Effective length of query: 528 Effective length of database: 4,102,837 Effective search space: 2166297936 Effective search space used: 2166297936 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 60 (26.9 bits)