RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780832|ref|YP_003065245.1| putative potassium uptake
transport system protein [Candidatus Liberibacter asiaticus str.
psy62]
(628 letters)
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 31.8 bits (72), Expect = 0.27
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 566 LKFE--IMNTSFYLGRRKLVPTSRAGMPNWQDHLFIML-----STYAEDPSDYFHLPANR 618
+K+ +N + R++ + T A + +W ++ L +ED +++ R
Sbjct: 17 VKYASPNLNMKY---RKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLL---ER 70
Query: 619 VVEI 622
EI
Sbjct: 71 TREI 74
>3ktc_A Xylose isomerase; putative sugar isomerase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
(A:1-275)
Length = 275
Score = 30.7 bits (68), Expect = 0.50
Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 507 LHEQNIILTINTANQPRIPKEKRFVCEKISEH-FSRVELFFGYMEEQNVSQALAELRNNG 565
++ ++ + S V+L + + +S+ L++ G
Sbjct: 17 FANYIDRYAVDGYGPALSTIDQ--INAAKEVGELSYVDLPYPFTPGVTLSEVKDALKDAG 74
Query: 566 LKFEIMNTSFYL 577
LK + YL
Sbjct: 75 LKAIGITPEIYL 86
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum
binding enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} (B:1-14,B:140-193)
Length = 68
Score = 29.8 bits (67), Expect = 0.91
Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 544 LFFGYMEEQNVSQALAELRNNGLKFEIMNTS---FYLGRRK 581
F + +++ + E +K E + T +Y +
Sbjct: 29 YEFLKTTPEAMAKKVEEEGLEVIKPE-LGTKPRVYYKNLYR 68
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase,
FABG, short-chain alcohol reductase, fatty acid
biosynthesis, apicoplast; 1.5A {Plasmodium falciparum}
(A:)
Length = 285
Score = 28.3 bits (60), Expect = 2.9
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 388 MFSVFVHVCWKWKISKVIIFLFPLLSIEMTFL-GANLFKVLDGGYTP 433
+ +++ + FL S + ++ G V+DGG +P
Sbjct: 244 SNIPAGRMGTPEEVANLACFL---SSDKSGYINGRVF--VIDGGLSP 285
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; NMR {Mus musculus} (A:)
Length = 195
Score = 27.3 bits (60), Expect = 5.8
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 517 NTANQPRIPKEKRFVCEKISEHFSRVELFFGYMEEQNVSQALAELR----NNGLKFE 569
+ P P ++ E+ F GY +E + +LR ++
Sbjct: 113 FQGSPPA-PSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQ 168
>2ghs_A AGR_C_1268P; 15155668, calcium-binding protein, regucalcin,
structural genomics, joint center for structural
genomics, JCSG; 1.55A {Agrobacterium tumefaciens str}
(A:)
Length = 326
Score = 27.4 bits (58), Expect = 6.0
Identities = 1/27 (3%), Positives = 4/27 (14%), Gaps = 1/27 (3%)
Query: 442 IVMWTWRRGTNLLSTLTRHADIPIHSF 468
+ + G +
Sbjct: 299 AITANPQHGL-TFELGIEVKGRFEPLY 324
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT,
structural genomics, PSI-2, protein structure
initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
(A:186-280)
Length = 95
Score = 26.7 bits (59), Expect = 8.5
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 12/67 (17%)
Query: 506 ILHEQNIILT-INTANQPRIPKEKRFVCEKISEHFSRVELFFGYMEEQNVSQALAELRNN 564
+ I LT I + + E F + F G+ E+QNV AL LR
Sbjct: 30 TFALRGIDLTKIESRPSRKKAFEYLFYAD-----------FIGHREDQNVHNALENLREF 78
Query: 565 GLKFEIM 571
+++
Sbjct: 79 ATXVKVL 85
>1em8_A DNA polymerase III CHI subunit; DNA POL III, heterodimer,
clamp-loader, alpha-beta fold, gene regulation; HET:
DNA; 2.10A {Escherichia coli} (A:)
Length = 147
Score = 26.7 bits (59), Expect = 9.5
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 590 MPNWQDHLFIMLSTYAEDPSDYFHLPANRVVEIVSH 625
+ + + I L T D + F VV+ V +
Sbjct: 88 RSSSRRDILISLRTSFADFATAFT----EVVDFVPY 119
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel,
cell inner membrane, cell membrane, membrane,
transmembrane; HET: MA5; 2.24A {Escherichia coli O157}
PDB: 3kcv_A (A:)
Length = 285
Score = 26.5 bits (58), Expect = 9.8
Identities = 20/192 (10%), Positives = 51/192 (26%), Gaps = 21/192 (10%)
Query: 90 GGILSLLALLLKKIPKRSTVLIALGLAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDN 149
+L ++A +I + +G + ++ +
Sbjct: 92 STVLIVVAKASGRIT-WGQLAKNWLNVYFGNLVG---ALLFVLLMWLSGEYMTANGQWGL 147
Query: 150 FIILIALGILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISDDWG-ILAAFNP 208
++ A + F + I+ ++ + V P
Sbjct: 148 NVLQTADHKVHHTF---------IEAVCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLP 198
Query: 209 MYAL------HMVFGKGTISLVVLGSVFLTITGAEALYADLGHFG-RKPIQYAWMVIFPA 261
+ H + I + ++ F + A+ + +F + + + P
Sbjct: 199 VAMFVASGFEHSIANMFMIPMGIVIRDFASPEFWTAVGSAPENFSHLTVMNFITDNLIPV 258
Query: 262 LAINYLGQGALV 273
N +G G LV
Sbjct: 259 TIGNIIGGGLLV 270
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.327 0.141 0.422
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 4,610,341
Number of extensions: 202335
Number of successful extensions: 607
Number of sequences better than 10.0: 1
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 19
Length of query: 628
Length of database: 4,956,049
Length adjustment: 94
Effective length of query: 534
Effective length of database: 1,778,379
Effective search space: 949654386
Effective search space used: 949654386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.4 bits)