RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780832|ref|YP_003065245.1| putative potassium uptake
transport system protein [Candidatus Liberibacter asiaticus str.
psy62]
(628 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 62.3 bits (151), Expect = 3e-10
Identities = 104/664 (15%), Positives = 177/664 (26%), Gaps = 266/664 (40%)
Query: 15 PFYLMFESIGVVYGDIGTSV-----LYAFKEALKTTTMNHTLLVERTE----------VI 59
P L +G + + + L+ L E TE
Sbjct: 8 PLTL-------SHGSLEHVLLVPTASFFIASQLQEQFNKI--LPEPTEGFAADDEPTTPA 58
Query: 60 GLVSLMIWVLTIVVTIKYILLLL-RADNDGEGGILSLLALLLKKIPKRSTVLIALG---- 114
LV K++ + + G +L L L + + L G
Sbjct: 59 ELVG------------KFLGYVSSLVEPSKVGQFDQVLNLCLTEF--ENCYL--EGNDIH 102
Query: 115 -LAGSALFIGDSMVTPALSVLSAVEGVRYIAPELDNFIILIALGILVLLFMLQSHGTKGV 173
LA L D+ + ++ YI A M + K
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKN-----YIT----------AR------IMAKRPFDK-- 139
Query: 174 ACFFSPIMVAWLLMITVSGLI-HISDDWGILAAFNPMYALHMVF-GKGTISLVVLGSVF- 230
+ S L + + A + A +F G+G F
Sbjct: 140 --------------KSNSALFRAVGEG----NA--QLVA---IFGGQGNTD-----DYFE 171
Query: 231 -LTITGAEALYADLGHFGRKPIQYAWMVIF-----PALAINYLGQGALV---LSNPEAIK 281
L + LY I+++ + A QG + L NP
Sbjct: 172 EL----RD-LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 282 DPFYMMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAI--H-LGFLPRMKIFFTSE 338
D Y+ + S +I G LA + LGF P
Sbjct: 227 DKDYL--------------LSIPI--SCPLI-GVIQLAHYVVTAKLLGFTP--------- 260
Query: 339 TFKGQVFLPSINLFLFVGVLLFVIGFRHSESLVAAYGISVSGTMVISTIMFSVFVHVCWK 398
G++ G G HS+ LV A I+ + + W+
Sbjct: 261 ---GEL------RSYLKGA----TG--HSQGLVTAVAIAETDS---------------WE 290
Query: 399 --WKIS-KVIIFLF----------PLLSIEMTFLGANLFKVLDGGY---TPLLIASLCII 442
+ K I LF P S+ + L + L+ +P+ L I
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS----LENNEGVPSPM----LSI- 341
Query: 443 VMWTWRRGTNLLS--TLTRHAD-----IPIHSFI-ISIENSSQQ--VPGTAIFLTSDSQA 492
L+ + + + +P + IS+ N ++ V G
Sbjct: 342 ------SN---LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP---------- 382
Query: 493 VPDAL--LQNIKHNRILHEQNIILTINTANQPRIPKEKRFVCEKISEHFSRVELFF--GY 548
P +L L N L + + +Q RIP +R + K S F V F
Sbjct: 383 -PQSLYGL-----NLTLRK---AKAPSGLDQSRIPFSERKL--KFSNRFLPVASPFHSHL 431
Query: 549 ME--EQNVSQALA----ELRNNGLKFEIMNTSFYLGR--RK----LVP------TSRAGM 590
+ +++ L ++ + +T + G R + +
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDT--FDGSDLRVLSGSISERIVDCIIR---L 486
Query: 591 P-NW 593
P W
Sbjct: 487 PVKW 490
Score = 44.5 bits (105), Expect = 7e-05
Identities = 48/253 (18%), Positives = 74/253 (29%), Gaps = 116/253 (45%)
Query: 431 YTPL---LIASLCIIVMWTWRRGTNLLSTLTRHADIPIHSF-----IIS-IENSSQQVPG 481
Y L LI LS L R F I+ +EN S P
Sbjct: 180 YHVLVGDLIKFS-----------AETLSELIRTTLDAEKVFTQGLNILEWLENPSNT-PD 227
Query: 482 TAIFLTSDSQAVP-DALLQNIKH----NRIL----------------HEQNIILTINTAN 520
+L S + P ++Q + H ++L H Q ++ + A
Sbjct: 228 KD-YLLSIPISCPLIGVIQ-LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA- 284
Query: 521 QPRIPKEKRFVCEKIS-EHFSRVELFFGYMEEQNVSQALAELRNNGLKFEIMNTSFYLG- 578
E S E F +V +A+ ++ F++G
Sbjct: 285 ------------ETDSWESF-----------FVSVRKAI----------TVL---FFIGV 308
Query: 579 -------RRKLVPTSRA-------GMPNWQDHLFIMLSTYAEDPS--------DYF--HL 614
L P+ G+P+ MLS + + + HL
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSP------MLSI--SNLTQEQVQDYVNKTNSHL 360
Query: 615 PANRVVEIVSHVN 627
PA + VEI S VN
Sbjct: 361 PAGKQVEI-SLVN 372
Score = 38.4 bits (89), Expect = 0.004
Identities = 80/454 (17%), Positives = 122/454 (26%), Gaps = 242/454 (53%)
Query: 58 VIGLVSLMIWVLTIVVTIKYILLLLRADNDGEGGILSLLALLLKKIPKRST-----VLIA 112
+IG++ L VVT K +L GE + S L K +T ++ A
Sbjct: 240 LIGVIQL----AHYVVTAK-LLGF----TPGE--LRSYL--------KGATGHSQGLVTA 280
Query: 113 LGLAGSALFIGDSMVTPALSVLSAVE-----GVR----Y----IAPELDNFIILIALGIL 159
+ +A + DS + +SV A+ GVR Y + P
Sbjct: 281 VAIAET-----DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS------------- 322
Query: 160 VLLFMLQ---SHGTKGVACFFSPIMVAWLLMITVSGL------IHISDDWGILAAFN--- 207
+L+ + +GV SP M+++S L ++ N
Sbjct: 323 ----ILEDSLENN-EGVP---SP-------MLSISNLTQEQVQDYV-------NKTNSHL 360
Query: 208 PMYALHMVFGKGTISLV------VLGSVFLTITG-AEALYADLGHFGRKPIQYAWMVIFP 260
P + ISLV V ++G ++LY
Sbjct: 361 PAGK-QVE-----ISLVNGAKNLV-------VSGPPQSLY-------------------- 387
Query: 261 ALAINYLGQGALVLSNPEAIKDPFYMMFGGWFLPFAVLTATCATVIASQAVITGTFSLAR 320
L L K P G Q+ I FS +
Sbjct: 388 ----------GLNL-TLRKAKAP-----SG----------------LDQSRI--PFSERK 413
Query: 321 QAIHLGFLPRMKIFFTSETFKGQVFLPSINLFLFVGVLLFVIGFRHSESL---------- 370
FLP V P F HS L
Sbjct: 414 LKFSNRFLP--------------VASP----F-------------HSHLLVPASDLINKD 442
Query: 371 VAAYGISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIEMTFLGANLFKVLDGG 430
+ +S + I V+ TF G++L +VL G
Sbjct: 443 LVKNNVSFNA----KDIQIPVY-D----------------------TFDGSDL-RVLSGS 474
Query: 431 YTPLLIASLCII---VMWTWRRGTNLLSTLTRHA 461
+ ++ CII V W T +T H
Sbjct: 475 ISERIVD--CIIRLPVKWE--TTTQFKAT---HI 501
Score = 33.0 bits (75), Expect = 0.18
Identities = 36/215 (16%), Positives = 53/215 (24%), Gaps = 69/215 (32%)
Query: 410 PLLSIEMT--FLGANLFKVLD---GGYTPLLIASLCIIVMWTWRRGTNLLSTLTRHADIP 464
P E+ FLG V G + +L L T + DI
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL-----------TEFENCYLEGNDI- 101
Query: 465 IHSFIISIENSSQQVPGTAIFLTSDSQAVPDALLQNIKHNRILHEQNIILTINTANQPRI 524
H+ L ++ K ++ +N I A +P
Sbjct: 102 -HALAAK--------------LLQENDTTLV------KTKELI--KNYITARIMAKRP-F 137
Query: 525 PKEKR---FVCEKISEHFSRVELFFGYMEEQ-NVSQALAELRNNGLKFEIMNTSFYLGRR 580
K+ F + V +F G Q N ELR ++ T Y
Sbjct: 138 DKKSNSALFRAVG-EGNAQLVAIFGG----QGNTDDYFEELR------DLYQT--Y---H 181
Query: 581 KLVPT--SRAGMPNWQDHLFIMLSTYAEDPSDYFH 613
LV + L D F
Sbjct: 182 VLVGDLIKFSAE------TLSELIRTTLDAEKVFT 210
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.8 bits (89), Expect = 0.003
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 15/40 (37%)
Query: 100 LKKIPKRSTVLIALGLAGS-ALFIGDSMVTPALSVLSAVE 138
LKK L S L+ DS PAL++ + +E
Sbjct: 22 LKK------------LQASLKLYADDS--APALAIKATME 47
Score = 33.4 bits (75), Expect = 0.16
Identities = 11/31 (35%), Positives = 12/31 (38%), Gaps = 17/31 (54%)
Query: 237 EA---LYADLGHFGRKPIQYAWMVIFPALAI 264
+A LYAD A PALAI
Sbjct: 26 QASLKLYAD---------DSA-----PALAI 42
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus
subtilis}
Length = 552
Score = 30.5 bits (69), Expect = 1.0
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 13/56 (23%)
Query: 286 MMFGGWFLPFAVLTATCATVIASQAVITGTF----SLARQAIHLGFLPRMKIFFTS 337
MM+G +TA I SQ ++ GT+ LARQ H G + + T+
Sbjct: 123 MMYGQ-------MTAGSWIYIGSQGILQGTYETFAELARQ--HFGGSLKGTLTLTA 169
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus HB8} PDB: 2yvx_A
Length = 473
Score = 29.3 bits (65), Expect = 2.5
Identities = 25/221 (11%), Positives = 54/221 (24%), Gaps = 11/221 (4%)
Query: 174 ACFFSPIMVAWLLMITVSGLIHISDDWGILAAFNPMY---ALHMVFGKGTISLVVLGSVF 230
P +M + D +A Y L +V +G + +V
Sbjct: 212 LIVADPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDV 271
Query: 231 LTITGAEALYADLGHFGRKPIQYAWMVIFPALAINY---LGQGALVLSNPEAIKDPFYMM 287
L + AEA + P ++ + +
Sbjct: 272 LDVLEAEATEDIHKLGAVDVPDLVYSEAGPVALWLARVRWLVILILTGMVTSSILQGFES 331
Query: 288 FGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLPRMKIFFTSETFKGQVFLP 347
A + + T + A L + F E G
Sbjct: 332 VLEAVTALAFYVPVLLGTGGNTGNQSATLIIRALATRDLDLRDWRRVFLKEMGVG----- 386
Query: 348 SINLFLFVGVLLFVIGFRHSESLVAAYGISVSGTMVISTIM 388
+ +L+ + + L+ G+S+ + + ++
Sbjct: 387 LLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLV 427
>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural
genomics, PSI-2, protein structure initiative; 2.70A
{Polaromonas SP}
Length = 428
Score = 29.2 bits (64), Expect = 2.7
Identities = 43/303 (14%), Positives = 89/303 (29%), Gaps = 28/303 (9%)
Query: 105 KRSTVLIAL----GLAGSALFIGDSMVTPALSVLSAVEGV-RYIAPEL---DNFIILIAL 156
KR ++I + G+ G G+ P S + + IAP L + A
Sbjct: 68 KRDAIIIRVETSEGITG----YGE--AHPGRSPGAITSLIHNTIAPMLIGMKATDCVGAW 121
Query: 157 GILVLLFMLQSHGTKGVACFFSPIMVAWLLMITVSGLIHISDDWGILAAFNPMYALHMVF 216
+ + + G A S I +A + + + + + G P YA +
Sbjct: 122 QRVHRMQLSSHGLGAGAALAISGIDMALWDIRGKAANMPLYELLGGSKRRIPAYAGGIAL 181
Query: 217 GKGTISLVVLGSVFLTITGAEALYADLGHFGRKPIQYAWMVIFPALAINYLGQGALVLSN 276
G + + G +AL +G R I+ V LG +L++
Sbjct: 182 GYQPKESLAEEAQEYIARGYKALKLRIGDAARVDIERVRHVRK------VLGDEVDILTD 235
Query: 277 PEAIKDPFYMMFGGWFLPFAVLTATCATVIASQAVITGTFSLARQAIHLGFLP--RMKIF 334
L + S A +P +
Sbjct: 236 ANTAYTMADARRVLPVLAEIQAGWLEEPFACND-----FASYREVAKITPLVPIAAGENH 290
Query: 335 FTSETFKGQVFLPSINLFLF-VGVLLFVIGFRHSESLVAAYGISVSGTMVISTIMFSVFV 393
+T F + ++ ++ + + ++ +AY I ++ + + + +
Sbjct: 291 YTRFEFGQMLDAGAVQVWQPDLSKCGGITEGIRIAAMASAYRIPINAHSSATGLNHAATI 350
Query: 394 HVC 396
H
Sbjct: 351 HFL 353
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure,
structural genomics, PSI-2, protein structure
initiative; 1.71A {Vibrio parahaemolyticus rimd 2210633}
SCOP: d.58.18.13
Length = 101
Score = 29.3 bits (66), Expect = 2.7
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 488 SDSQAVPDALLQNIKHNRILHEQNII---LTINTANQPRIPKEKRFVCEKISEHFSRVEL 544
S++ ++P+ ++ NR+ ++ T T + P + + R +S S ++
Sbjct: 1 SNALSIPEDYQARLQPNRVEGSYPLVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDY 60
Query: 545 F----FGYM------EEQNVSQALAELRNNGLKFEIM 571
FG M EQ+ S A+ LR N +K E++
Sbjct: 61 AGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL 97
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics,
joint center for structural genomics, JCSG; HET: MSE;
1.54A {Pectobacterium atrosepticum SCRI1043}
Length = 333
Score = 28.6 bits (63), Expect = 4.9
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 539 FSRVELFFGYMEEQNVSQALAELRNNGLKFEIMNTSFYLGRRKL 582
S V+L + + +S+ L++ GLK + YL +
Sbjct: 48 LSYVDLPYPFTPGVTLSEVKDALKDAGLKAIGITPEIYLQKWSR 91
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13,
mitochondrial; mitochondrial ribosome, large ribosomal
subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_I
Length = 118
Score = 28.3 bits (63), Expect = 5.4
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 219 GTISLVVLGSVFLTITGAEALYADLGHF-GRKPIQYAWMVIFPALAINYLGQGA 271
G +++ LG +L E + + K + W V P I G
Sbjct: 15 GNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGH 68
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus HB27} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 27.6 bits (60), Expect = 8.5
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 243 LGHFGRKPIQY--AWMVIFPALAINYLGQGALVLSNPEAIKD 282
L + P+ AW P L + ++ +PE ++
Sbjct: 13 LKDLQQDPLAVLLAWGRAHPRLFLPLPRFPLALIFDPEGVEG 54
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.327 0.141 0.422
Gapped
Lambda K H
0.267 0.0514 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 5,248,238
Number of extensions: 240509
Number of successful extensions: 821
Number of sequences better than 10.0: 1
Number of HSP's gapped: 810
Number of HSP's successfully gapped: 36
Length of query: 628
Length of database: 5,693,230
Length adjustment: 98
Effective length of query: 530
Effective length of database: 3,317,318
Effective search space: 1758178540
Effective search space used: 1758178540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.4 bits)