HHsearch alignment for GI: 254780833 and conserved domain: cd00198

>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.72  E-value=4.4e-16  Score=115.44  Aligned_cols=150  Identities=30%  Similarity=0.408  Sum_probs=116.8

Q ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHHHHHC
Q ss_conf             4069985276311566787214898999998750023355553110479878863674178166655--87899999740
Q gi|254780833|r  169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQEKINR  246 (371)
Q Consensus       169 idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~~i~~  246 (371)
T Consensus         1 ~div~vlD~S~Sm~~------~~~~~~k~~~~~~~~~l~~~---~~~~~v~vv~f~~~~~~~~~~~~~~~~~~~~~~i~~   71 (161)
T cd00198           1 ADIVFLLDVSGSMGG------EKLDKAKEALKALVSSLSAS---PPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDA   71 (161)
T ss_pred             CEEEEEEECCCCCCC------HHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEECCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             909999918899880------79999999999999987655---999889999937951488147412579999997751


Q ss_pred             CC--CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             15--6887456423788999987421101234677766616999984045888888978999999999978987999994
Q gi|254780833|r  247 LI--FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGV  324 (371)
Q Consensus       247 l~--~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~  324 (371)
T Consensus        72 ~~~~~~g~t~~~~al~~a~~~~~~~~---------~~~~~~~iiliTDG~~~~~~---~~~~~~~~~~~~~~v~i~~igi  139 (161)
T cd00198          72 LKKGLGGGTNIGAALRLALELLKSAK---------RPNARRVIILLTDGEPNDGP---ELLAEAARELRKLGITVYTIGI  139 (161)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHC---------CCCCCEEEEEECCCCCCCCH---HHHHHHHHHHHHCCCEEEEEEE
T ss_conf             35689998389999999999987532---------55565179996789989873---6799999999977998999996


Q ss_pred             CCCCCHHHHHHHCCC
Q ss_conf             186427989983389
Q gi|254780833|r  325 QAEAADQFLKNCASP  339 (371)
Q Consensus       325 ~~~~~~~~l~~cAs~  339 (371)
T Consensus       140 g~~~~~~~l~~ia~~  154 (161)
T cd00198         140 GDDANEDELKEIADK  154 (161)
T ss_pred             CHHHCHHHHHHHHHC
T ss_conf             611199999999838