HHsearch alignment for GI: 254780833 and conserved domain: cd01452
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=97.90 E-value=0.0013 Score=40.14 Aligned_cols=169 Identities=15% Similarity=0.123 Sum_probs=113.0
Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECC-CCEEECCCCCCHHHHHHHHHCCC
Q ss_conf 06998527631156678721489899999875002335555311047987886367-41781666558789999974015
Q gi|254780833|r 170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSS-KIVQTFPLAWGVQHIQEKINRLI 248 (371)
Q Consensus 170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~~lt~~~~~~~~~i~~l~ 248 (371)
T Consensus 5 Atmi~iDNSe~~RNGDy-~PtR~~AQ~dAvn~i~~~k~~---~NpEn~VGl~tmag~~~~Vl~TlT~D~gkiL~~lh~i~ 80 (187)
T cd01452 5 ATMICIDNSEYMRNGDY-PPTRFQAQADAVNLICQAKTR---SNPENNVGLMTMAGNSPEVLVTLTNDQGKILSKLHDVQ 80 (187)
T ss_pred EEEEEEECCHHHCCCCC-CCCHHHHHHHHHHHHHHHHHH---CCCCCCEEEEEECCCCCEEEEECCCCHHHHHHHCCCCC
T ss_conf 89999978566505898-971899999999999977751---49533113576158986689844865788987532677
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCC-
Q ss_conf 6887456423788999987421101234677766616999984045888888978999999999978987999994186-
Q gi|254780833|r 249 FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAE- 327 (371)
Q Consensus 249 ~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~~- 327 (371)
T Consensus 81 ~~G~~~~~~~IqiA~LALKHR---------qnk~~~qRIv~FVgS-Pi~--~~ek~l~~laKklKKnnV~vDII~FGe~~ 148 (187)
T cd01452 81 PKGKANFITGIQIAQLALKHR---------QNKNQKQRIVAFVGS-PIE--EDEKDLVKLAKRLKKNNVSVDIINFGEID 148 (187)
T ss_pred CCCEECHHHHHHHHHHHHHCC---------CCCCCCEEEEEEECC-CCC--CCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 187651887999999997234---------677754479999789-875--57899999999875558535899946888
Q ss_pred CCHHHHHHHC----C--CCEEEEECCHHHH-HHH
Q ss_conf 4279899833----8--9808982898999-999
Q gi|254780833|r 328 AADQFLKNCA----S--PDRFYSVQNSRKL-HDA 354 (371)
Q Consensus 328 ~~~~~l~~cA----s--~~~~y~~~~~~~L-~~a 354 (371)
T Consensus 149 ~n~~kL~~f~~~vn~~~~Shlv~ippg~~lLSd~ 182 (187)
T cd01452 149 DNTEKLTAFIDAVNGKDGSHLVSVPPGENLLSDA 182 (187)
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHH
T ss_conf 9989999999984589982599947998645676