HHsearch alignment for GI: 254780833 and conserved domain: cd01455

>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.02  E-value=0.00084  Score=41.30  Aligned_cols=174  Identities=13%  Similarity=0.168  Sum_probs=103.5

Q ss_pred             EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC------CEEECCCCCCHHHHHHHH
Q ss_conf             69985276311566787214898999998750023355553110479878863674------178166655878999997
Q gi|254780833|r  171 MMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK------IVQTFPLAWGVQHIQEKI  244 (371)
Q Consensus       171 i~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~------~~~~~~lt~~~~~~~~~i  244 (371)
T Consensus         3 lr~v~DvSgSMYRF-Ng~DgRL~R~lEa~~MvMEaf~g~e~k---~~ydIvGHSGd~~~I~lV~~~~~Pk~~keRl~-vl   77 (191)
T cd01455           3 LKLVVDVSGSMYRF-NGYDGRLDRSLEAVVMVMEAFDGFEDK---IQYDIIGHSGDGPCVPFVKTNHPPKNNKERLE-TL   77 (191)
T ss_pred             EEEEEECCCCEEEE-CCCCHHHHHHHHHHHHHHHHHHCCCCE---EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH-HH
T ss_conf             69999735442330-475328999999999999986175400---57887502688775102348999986689999-99


Q ss_pred             HCCCC-----CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             40156-----8874564237889999874211012346777666169999840458888889789999999999789879
Q gi|254780833|r  245 NRLIF-----GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIV  319 (371)
Q Consensus       245 ~~l~~-----~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i  319 (371)
T Consensus        78 ~~M~AHsQyC~sGD~Tlea~~~Ai~~l~a~~----------d~De~fVivlSDANL~RYgI~p~~l~~~l~--~~p~V~a  145 (191)
T cd01455          78 KMMHAHSQFCWSGDHTVEATEFAIKELAAKE----------DFDEAIVIVLSDANLERYGIQPKKLADALA--REPNVNA  145 (191)
T ss_pred             HHHHHHHHHEECCCCHHHHHHHHHHHHHHCC----------CCCCCEEEEECCCCHHHCCCCHHHHHHHHH--CCCCCCE
T ss_conf             9863120100258844899999999875302----------677608999814764431889899999973--3877668


Q ss_pred             EEEEECCCCCH-HHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf             99994186427-9899833898089828989999999999996
Q gi|254780833|r  320 YAIGVQAEAAD-QFLKNCASPDRFYSVQNSRKLHDAFLRIGKE  361 (371)
Q Consensus       320 ~tIg~~~~~~~-~~l~~cAs~~~~y~~~~~~~L~~af~~I~~~  361 (371)
T Consensus       146 ~~IfIgslg~eA~~l~~~lP~G~~fVc~dt~~lP~il~qIfts  188 (191)
T cd01455         146 FVIFIGSLSDEADQLQRELPAGKAFVCMDTSELPHIMQQIFTS  188 (191)
T ss_pred             EEEEEECHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf             9999735167999999748997417853653678999999887