HHsearch alignment for GI: 254780833 and conserved domain: cd01455
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.02 E-value=0.00084 Score=41.30 Aligned_cols=174 Identities=13% Similarity=0.168 Sum_probs=103.5
Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC------CEEECCCCCCHHHHHHHH
Q ss_conf 69985276311566787214898999998750023355553110479878863674------178166655878999997
Q gi|254780833|r 171 MMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK------IVQTFPLAWGVQHIQEKI 244 (371)
Q Consensus 171 i~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~------~~~~~~lt~~~~~~~~~i 244 (371)
T Consensus 3 lr~v~DvSgSMYRF-Ng~DgRL~R~lEa~~MvMEaf~g~e~k---~~ydIvGHSGd~~~I~lV~~~~~Pk~~keRl~-vl 77 (191)
T cd01455 3 LKLVVDVSGSMYRF-NGYDGRLDRSLEAVVMVMEAFDGFEDK---IQYDIIGHSGDGPCVPFVKTNHPPKNNKERLE-TL 77 (191)
T ss_pred EEEEEECCCCEEEE-CCCCHHHHHHHHHHHHHHHHHHCCCCE---EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH-HH
T ss_conf 69999735442330-475328999999999999986175400---57887502688775102348999986689999-99
Q ss_pred HCCCC-----CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 40156-----8874564237889999874211012346777666169999840458888889789999999999789879
Q gi|254780833|r 245 NRLIF-----GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIV 319 (371)
Q Consensus 245 ~~l~~-----~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i 319 (371)
T Consensus 78 ~~M~AHsQyC~sGD~Tlea~~~Ai~~l~a~~----------d~De~fVivlSDANL~RYgI~p~~l~~~l~--~~p~V~a 145 (191)
T cd01455 78 KMMHAHSQFCWSGDHTVEATEFAIKELAAKE----------DFDEAIVIVLSDANLERYGIQPKKLADALA--REPNVNA 145 (191)
T ss_pred HHHHHHHHHEECCCCHHHHHHHHHHHHHHCC----------CCCCCEEEEECCCCHHHCCCCHHHHHHHHH--CCCCCCE
T ss_conf 9863120100258844899999999875302----------677608999814764431889899999973--3877668
Q ss_pred EEEEECCCCCH-HHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 99994186427-9899833898089828989999999999996
Q gi|254780833|r 320 YAIGVQAEAAD-QFLKNCASPDRFYSVQNSRKLHDAFLRIGKE 361 (371)
Q Consensus 320 ~tIg~~~~~~~-~~l~~cAs~~~~y~~~~~~~L~~af~~I~~~ 361 (371)
T Consensus 146 ~~IfIgslg~eA~~l~~~lP~G~~fVc~dt~~lP~il~qIfts 188 (191)
T cd01455 146 FVIFIGSLSDEADQLQRELPAGKAFVCMDTSELPHIMQQIFTS 188 (191)
T ss_pred EEEEEECHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf 9999735167999999748997417853653678999999887