HHsearch alignment for GI: 254780833 and conserved domain: cd01457
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=98.79 E-value=1.4e-07 Score=64.14 Aligned_cols=157 Identities=16% Similarity=0.124 Sum_probs=90.8
Q ss_pred CCEEEEECCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf 4069985276311566787-214898999998750023355553110479878863674178166655878999997401
Q gi|254780833|r 169 LDMMMVLDVSLSMNDHFGP-GMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINRL 247 (371)
Q Consensus 169 idi~~viD~SgSm~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i~~l 247 (371)
T Consensus 3 rD~v~lIDdSgSM~~~d~~~~~sRW~~a~~al~~iA~~c~~~D~DG----Idvyfln~~~~~~~~--~~~~~V~~iF~~~ 76 (199)
T cd01457 3 RDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDG----ITVYLFSGDFRRYDN--VNSSKVDQLFAEN 76 (199)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC----CEEEEEECCCCCCCC--CCHHHHHHHHHCC
T ss_conf 7779999688876677678887629999999999999998748899----879996277645688--8999999998558
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-EEEEEEECCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEEEEC
Q ss_conf 5688745642378899998742110123467776661-699998404588888897899999999997-89879999941
Q gi|254780833|r 248 IFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYK-KYIIFLTDGENSSPNIDNKESLFYCNEAKR-RGAIVYAIGVQ 325 (371)
Q Consensus 248 ~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~-~gi~i~tIg~~ 325 (371)
T Consensus 77 ~P~G~T~~g~~L~~il~~y~~r~~~~------~~kp~g~~iIVITDG~p~D~~av~~~Ii~aa~kLd~~~qlgIqF~QVG 150 (199)
T cd01457 77 SPDGGTNLAAVLQDALNNYFQRKENG------ATCPEGETFLVITDGAPDDKDAVERVIIKASDELDADNELAISFLQIG 150 (199)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCC------CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 98997963799999989998732006------899986079998279979828899999999986344010036777855
Q ss_pred CCCC-HHHHHHHC
Q ss_conf 8642-79899833
Q gi|254780833|r 326 AEAA-DQFLKNCA 337 (371)
Q Consensus 326 ~~~~-~~~l~~cA 337 (371)
T Consensus 151 ~D~~A~~fL~~LD 163 (199)
T cd01457 151 RDPAATAFLKALD 163 (199)
T ss_pred CCHHHHHHHHHHC
T ss_conf 9688999999858