HHsearch alignment for GI: 254780833 and conserved domain: cd01458

>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=96.75  E-value=0.037  Score=31.40  Aligned_cols=156  Identities=13%  Similarity=0.157  Sum_probs=85.2

Q ss_pred             CEEEEECCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCE----------EECCCCC-CH
Q ss_conf             069985276311566787-21489899999875002335555311047987886367417----------8166655-87
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGP-GMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIV----------QTFPLAW-GV  237 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~----------~~~~lt~-~~  237 (371)
T Consensus         3 ~ivflID~s~sM~~~~~~~~~s~~~~al~~i~~~~~~k---iis~~~d~vGvv~~~T~~~~n~~~~~~i~vl~~l~~~~a   79 (218)
T cd01458           3 SVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSK---IISSPKDLVGVVFYGTEESKNPVGYENIYVLLDLDTPGA   79 (218)
T ss_pred             EEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHH---EECCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCH
T ss_conf             79999979977847767888883999999999999865---067899869999976788888789872699633887677


Q ss_pred             HHHHHHHHCCCC-----------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC--HHH
Q ss_conf             899999740156-----------8874564237889999874211012346777666169999840458888889--789
Q gi|254780833|r  238 QHIQEKINRLIF-----------GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID--NKE  304 (371)
Q Consensus       238 ~~~~~~i~~l~~-----------~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~--~~~  304 (371)
T Consensus        80 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~~~~~f~~~---------~~~~~~krI~lfTdnD~P~~~~~~~~~~  150 (218)
T cd01458          80 ERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKG---------KKKKSHKRIFLFTNNDDPHGGDSIKDSQ  150 (218)
T ss_pred             HHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC---------CCCCCCCEEEEECCCCCCCCCCHHHHHH
T ss_conf             9999999986010235566448888867999999999999855---------5345777799986899899988799999


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCC---C-HHHHHHHC
Q ss_conf             999999999789879999941864---2-79899833
Q gi|254780833|r  305 SLFYCNEAKRRGAIVYAIGVQAEA---A-DQFLKNCA  337 (371)
Q Consensus       305 ~~~~c~~~k~~gi~i~tIg~~~~~---~-~~~l~~cA  337 (371)
T Consensus       151 a~~~a~DL~d~gI~iel~~l~~~~~~Fd~s~FY~dii  187 (218)
T cd01458         151 AAVKAEDLKDKGIELELFPLSSPGKKFDVSKFYKDII  187 (218)
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHH
T ss_conf             9999988987796899984489988688067788752