HHsearch alignment for GI: 254780833 and conserved domain: cd01464
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.86 E-value=3e-20 Score=140.60 Aligned_cols=173 Identities=21% Similarity=0.228 Sum_probs=134.8
Q ss_pred CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHHHCC
Q ss_conf 74069985276311566787214898999998750023355553110479878863674178166655878999997401
Q gi|254780833|r 168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINRL 247 (371)
Q Consensus 168 ~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i~~l 247 (371)
T Consensus 3 rlpvvlvlD~SGSM~G------~~i~~~k~al~~~~~~L~~d~~a~~~~~vsVItF~s~a~~~~pl~~~---~~~~~~~L 73 (176)
T cd01464 3 RLPIYLLLDTSGSMAG------EPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIVPLTPL---ESFQPPRL 73 (176)
T ss_pred CCCEEEEEECCCCCCC------HHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEEEECCCEEEECCCCCH---HHCCCCCC
T ss_conf 3578999978999998------47999999999999997118310113269999978951780586347---66475547
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 56887456423788999987421101234677766616999984045888888978999999999978987999994186
Q gi|254780833|r 248 IFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAE 327 (371)
Q Consensus 248 ~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~~ 327 (371)
T Consensus 74 ~a~G~T~~g~al~~a~~~l~~~~~~~~--~~~~~~~~P~I~LlTDG~PtD---~~~~~~~~~~~~~~~~~~i~a~giG~d 148 (176)
T cd01464 74 TASGGTSMGAALELALDCIDRRVQRYR--ADQKGDWRPWVFLLTDGEPTD---DLTAAIERIKEARDSKGRIVACAVGPK 148 (176)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCEEEEEECCCCCCC---CHHHHHHHHHHHHHCCCEEEEEEEECC
T ss_conf 778998199999999999998652236--556677531799966899887---589999999988863976999997387
Q ss_pred CCHHHHHHHCCCCEEEEECCHHHHHHHHH
Q ss_conf 42798998338980898289899999999
Q gi|254780833|r 328 AADQFLKNCASPDRFYSVQNSRKLHDAFL 356 (371)
Q Consensus 328 ~~~~~l~~cAs~~~~y~~~~~~~L~~af~ 356 (371)
T Consensus 149 ad~~~L~~is~~--~~~~~~~~~f~~ff~ 175 (176)
T cd01464 149 ADLDTLKQITEG--VPLLDDALSGLNFFK 175 (176)
T ss_pred CCHHHHHHHHCC--CCCCCCHHHHHHHHC
T ss_conf 189999988577--745345345888508