HHsearch alignment for GI: 254780833 and conserved domain: cd01469
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=99.78 E-value=1.7e-17 Score=124.03 Aligned_cols=166 Identities=24% Similarity=0.358 Sum_probs=127.4
Q ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHHHHHC
Q ss_conf 4069985276311566787214898999998750023355553110479878863674178166655--87899999740
Q gi|254780833|r 169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQEKINR 246 (371)
Q Consensus 169 idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~~i~~ 246 (371)
T Consensus 1 lDl~fllD~S~Sv~~------~~F~~~k~fi~~lv~~f~i~---~~~~rvglv~ys~~~~~~~~l~~~~~~~~~~~~i~~ 71 (177)
T cd01469 1 MDIVFVLDGSGSIYP------DDFQKVKNFLSTVMKKLDIG---PTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKH 71 (177)
T ss_pred CCEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCCCC---CCCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 909999968899998------99999999999999866769---987489999936824999823556778999999862
Q ss_pred CC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 15-68874564237889999874211012346777666169999840458888889789999999999789879999941
Q gi|254780833|r 247 LI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQ 325 (371)
Q Consensus 247 l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~ 325 (371)
T Consensus 72 i~~~~g~t~t~~AL~~a~~~~f~~~~------g~R~~~~kv~ivlTDG~s~d~~----~~~~~~~~lk~~gv~vf~VGvG 141 (177)
T cd01469 72 ISQLLGLTNTATAIQYVVTELFSESN------GARKDATKVLVVITDGESHDDP----LLKDVIPQAEREGIIRYAIGVG 141 (177)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCC------CCCCCCEEEEEEEECCCCCCCC----CHHHHHHHHHHCCEEEEEEEEC
T ss_conf 30368975252799999998536455------8867871699999789867750----1499999999799089999955
Q ss_pred CCC----CHHHHHHHCC-C--CEEEEECCHHHHHH
Q ss_conf 864----2798998338-9--80898289899999
Q gi|254780833|r 326 AEA----ADQFLKNCAS-P--DRFYSVQNSRKLHD 353 (371)
Q Consensus 326 ~~~----~~~~l~~cAs-~--~~~y~~~~~~~L~~ 353 (371)
T Consensus 142 ~~~~~~~~~~eL~~iAs~P~~~hvf~~~~f~~L~~ 176 (177)
T cd01469 142 GHFQRENSREELKTIASKPPEEHFFNVTDFAALKD 176 (177)
T ss_pred CCCCCCCCHHHHHHHHCCCCHHCEEEECCHHHHCC
T ss_conf 51467451999999967985871998379777646