HHsearch alignment for GI: 254780833 and conserved domain: cd01476
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.69 E-value=2.5e-15 Score=110.89 Aligned_cols=153 Identities=22% Similarity=0.325 Sum_probs=111.0
Q ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEE--CCCC--CCHHHHHHHH
Q ss_conf 40699852763115667872148989999987500233555531104798788636741781--6665--5878999997
Q gi|254780833|r 169 LDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQT--FPLA--WGVQHIQEKI 244 (371)
Q Consensus 169 idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~lt--~~~~~~~~~i 244 (371)
T Consensus 1 lDl~fllD~S~Sv~~~-------f~~~k~F~~~lv~~f~---i~~~~~rVgvv~ys~~~~~~i~f~l~~~~~~~~l~~~I 70 (163)
T cd01476 1 LDLLFVLDSSGSVRGK-------FEKYKKYIERIVEGLE---IGPTATRVALITYSGRGRQRVRFNLPKHNDGEELLEKV 70 (163)
T ss_pred CCEEEEEECCCCHHHH-------HHHHHHHHHHHHHHHC---CCCCCEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 9299999188886673-------9999999999999614---68885389999966987078887577779999999999
Q ss_pred HCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEE
Q ss_conf 40156-88745642378899998742110123467776661699998404588888897899999999997-89879999
Q gi|254780833|r 245 NRLIF-GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKR-RGAIVYAI 322 (371)
Q Consensus 245 ~~l~~-~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~-~gi~i~tI 322 (371)
T Consensus 71 ~~i~~~~g~T~tg~AL~~a~~~~~~~~-------g~R~~~~kv~vviTDG~s~d~------~~~~a~~lr~~~gv~v~av 137 (163)
T cd01476 71 DNLRFIGGTTATGAAIEVALQQLDPSE-------GRREGIPKVVVVLTDGRSHDD------PEKQARILRAVPNIETFAV 137 (163)
T ss_pred HHEECCCCCCCHHHHHHHHHHHHHHHC-------CCCCCCEEEEEEEECCCCCCC------HHHHHHHHHHHCCCEEEEE
T ss_conf 752036898548999999999721420-------678996169999818987664------8899999997099899999
Q ss_pred EECC--CCCHHHHHHHCC-CCEEEE
Q ss_conf 9418--642798998338-980898
Q gi|254780833|r 323 GVQA--EAADQFLKNCAS-PDRFYS 344 (371)
Q Consensus 323 g~~~--~~~~~~l~~cAs-~~~~y~ 344 (371)
T Consensus 138 gVG~~~~~d~~eL~~Ia~~~~~Vft 162 (163)
T cd01476 138 GTGDPGTVDTEELHSITGNEDHIFT 162 (163)
T ss_pred EECCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 8388650159999986499725457