HHsearch results for GI: 254780833 and protein with PDBid: 1jey_B
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=98.69 E-value=7.9e-07 Score=58.26 Aligned_cols=146 Identities=14% Similarity=0.088 Sum_probs=97.7
Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC--------------CEEECCCCC
Q ss_conf 069985276311566787214898999998750023355553110479878863674--------------178166655
Q gi|254780833|r 170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK--------------IVQTFPLAW 235 (371)
Q Consensus 170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~--------------~~~~~~lt~ 235 (371)
.+++++|.|+||.....+..++++.+++++..++...-.. ....++|++.|+.. .....|+..
T Consensus 9 aiv~~iDvs~sM~~~~~~~~s~~~~a~~~~~~~~~~ki~~---~~~D~vglvlfgt~~t~N~l~~~~~~~~i~v~~~l~~ 85 (565)
T 1jey_B 9 AVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFA---ENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLML 85 (565)
T ss_dssp EEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHT---TCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEEC
T ss_pred EEEEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC---CCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 1999998986776768899997999999999999987338---9998799999805788875554457775599745889
Q ss_pred -CHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf -878999997401568-874564237889999874211012346777666169999840458888889789999999999
Q gi|254780833|r 236 -GVQHIQEKINRLIFG-STTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAK 313 (371)
Q Consensus 236 -~~~~~~~~i~~l~~~-g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k 313 (371)
+...++...+.+.++ +.++...++.++..+|.... ...+..++.|||+|||.+..+. .....+.+.++
T Consensus 86 ~~~~~l~~l~~~~~~~~~~~d~~~aL~va~~~l~~~~-------~~~k~~~~~Ivl~Td~~~p~~~---~~~~~i~~~l~ 155 (565)
T 1jey_B 86 PDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHET-------IGKKFEKRHIEIFTDLSSRFSK---SQLDIIIHSLK 155 (565)
T ss_dssp CCHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHS-------SSSCCSEEEEEEECCCCSCCCC---TTHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH-------HCCCCCCEEEEEEECCCCCCCH---HHHHHHHHHHH
T ss_conf 9999999998653688778787999999999999875-------0255562489999279988687---89999999998
Q ss_pred HCCCEEEEEEECCCC
Q ss_conf 789879999941864
Q gi|254780833|r 314 RRGAIVYAIGVQAEA 328 (371)
Q Consensus 314 ~~gi~i~tIg~~~~~ 328 (371)
+.||.+..|++....
T Consensus 156 ~~~i~L~vi~~~~~~ 170 (565)
T 1jey_B 156 KCDISLQFFLPFSLG 170 (565)
T ss_dssp HTTEEEEEEESSCCC
T ss_pred HCCCEEEEEECCCCC
T ss_conf 659669997036665