HHsearch results for GI: 254780833 and protein with PDBid: 1m2o_A

>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=94.01  E-value=0.24  Score=25.20  Aligned_cols=170  Identities=13%  Similarity=0.097  Sum_probs=94.7

Q ss_pred             CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEEC----------------
Q ss_conf             7406998527631156678721489899999875002335555311047987886367417816----------------
Q gi|254780833|r  168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTF----------------  231 (371)
Q Consensus       168 ~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----------------  231 (371)
                      +.-.+||+|.|...        ..++.+++.+...++.+..      ..++|+++|.......-                
T Consensus       121 pp~~vFvID~s~~s--------~~l~~l~~sl~~~l~~lp~------~~~VglITf~~~v~~~~l~~~~~~~~~v~~g~~  186 (768)
T 1m2o_A          121 PPIFFFVVDLTSET--------ENLDSLKESIITSLSLLPP------NALIGLITYGNVVQLHDLSSETIDRCNVFRGDR  186 (768)
T ss_dssp             CCEEEEEEECCSCH--------HHHHHHHHHHHHHHHTSCT------TCEEEEEEESSEEEECCCSSSSSEEEEEEETTS
T ss_pred             CCEEEEEEECCCCH--------HHHHHHHHHHHHHHHHCCC------CCEEEEEEECCEEEEEECCCCCCCCEEEECCCC
T ss_conf             98899999898656--------7899999999999961999------766999994787999988787766303632765


Q ss_pred             -------------------------------------------CCCCCHHHHHHHHHCCCCCC---------CCCCCCHH
Q ss_conf             -------------------------------------------66558789999974015688---------74564237
Q gi|254780833|r  232 -------------------------------------------PLAWGVQHIQEKINRLIFGS---------TTKSTPGL  259 (371)
Q Consensus       232 -------------------------------------------~lt~~~~~~~~~i~~l~~~g---------~T~~~~~~  259 (371)
                                                                 |+......+.+.++.+....         ......++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pl~e~~~~i~~lL~~L~~~~~~~~~~~~~~r~~g~Al  266 (768)
T 1m2o_A          187 EYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSAL  266 (768)
T ss_dssp             CCCHHHHHHHHHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHH
T ss_pred             CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf             53177776554035666654332346763222355541112466999999999999875303556743245766507899


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC------------HH---------------HHHHHHHHH
Q ss_conf             889999874211012346777666169999840458888889------------78---------------999999999
Q gi|254780833|r  260 EYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID------------NK---------------ESLFYCNEA  312 (371)
Q Consensus       260 ~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~------------~~---------------~~~~~c~~~  312 (371)
                      ..+...+.....     ..+     -.|++++.|.+|.|...            ..               --..+...+
T Consensus       267 ~~A~~ll~~~~~-----~~G-----grI~~f~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~  336 (768)
T 1m2o_A          267 NIASLLLQGCYK-----NIP-----ARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRV  336 (768)
T ss_dssp             HHHHHHHHHHCT-----TSC-----CEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-----CCC-----CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHH
T ss_conf             999999987506-----788-----7899992799987885341444344456644432101220451789999999999


Q ss_pred             HHCCCEEEEEEECCCC-CHHHHHHHC--CCCEEEEECCH--HHHHHHHHHHHHH
Q ss_conf             9789879999941864-279899833--89808982898--9999999999996
Q gi|254780833|r  313 KRRGAIVYAIGVQAEA-ADQFLKNCA--SPDRFYSVQNS--RKLHDAFLRIGKE  361 (371)
Q Consensus       313 k~~gi~i~tIg~~~~~-~~~~l~~cA--s~~~~y~~~~~--~~L~~af~~I~~~  361 (371)
                      .+.||.|-.+.+..+. +-..|+.|+  |+|..|..++.  ..+.+.|....+.
T Consensus       337 ~~~~isvDiF~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~~  390 (768)
T 1m2o_A          337 AANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAK  390 (768)
T ss_dssp             HHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHHHHTTCB
T ss_pred             HHCCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf             878979999981487667186653775388509970777520128999999865