HHsearch results for GI: 254780833 and protein with PDBid: 1pt6_A

>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.83  E-value=2.5e-19  Score=133.75  Aligned_cols=180  Identities=17%  Similarity=0.282  Sum_probs=135.3

Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHH
Q ss_conf             134674069985276311566787214898999998750023355553110479878863674178166655--878999
Q gi|254780833|r  164 KSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQ  241 (371)
Q Consensus       164 ~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~  241 (371)
                      ++..++|++|++|.|+||..        .+..++++..+++.+...   ....|++++.|++.+....+|+.  +...+.
T Consensus         3 eC~~~~DivfvlD~S~S~~~--------f~~~k~f~~~~i~~~~~~---~~~~rv~vv~y~~~~~~~~~l~~~~~~~~~~   71 (213)
T 1pt6_A            3 ECSTQLDIVIVLDGSNSIYP--------WDSVTAFLNDLLKRMDIG---PKQTQVGIVQYGENVTHEFNLNKYSSTEEVL   71 (213)
T ss_dssp             ----CEEEEEEEECCTTCCC--------HHHHHHHHHHHHTTSCBS---TTSBEEEEEEESSSEEEEECTTTCSSHHHHH
T ss_pred             CCCCCEEEEEEEECCCCCCC--------HHHHHHHHHHHHHHHCCC---CCCCEEEEEEEEEEEEEEECCCCCCCHHHHH
T ss_conf             79984489999979888878--------899999999999972448---8773788999742368997765567799999


Q ss_pred             HHHHCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             99740156887--4564237889999874211012346777666169999840458888889789999999999789879
Q gi|254780833|r  242 EKINRLIFGST--TKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIV  319 (371)
Q Consensus       242 ~~i~~l~~~g~--T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i  319 (371)
                      ..++.+...++  |+...++.++...+.....      ...++.+|++||+|||..++.    .......+.+|+.||+|
T Consensus        72 ~~i~~~~~~~g~~t~~~~al~~a~~~~~~~~~------g~R~~~~k~villTDG~~~d~----~~~~~~~~~lk~~gi~v  141 (213)
T 1pt6_A           72 VAAKKIVQRGGRQTMTALGTDTARKEAFTEAR------GARRGVKKVMVIVTDGESHDN----HRLKKVIQDCEDENIQR  141 (213)
T ss_dssp             HHHHTCCCCCCSSCCHHHHHHHHHHTTTSGGG------TCCTTCEEEEEEEESSCCSCS----HHHHHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC------CCCCCCEEEEEEEECCCCCCC----HHHHHHHHHHHHCCCEE
T ss_conf             99877775078410021234344432013224------787786689999846987884----15999999999889999


Q ss_pred             EEEEECCCCCH---------HHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             99994186427---------989983389---8089828989999999999996400
Q gi|254780833|r  320 YAIGVQAEAAD---------QFLKNCASP---DRFYSVQNSRKLHDAFLRIGKEMVK  364 (371)
Q Consensus       320 ~tIg~~~~~~~---------~~l~~cAs~---~~~y~~~~~~~L~~af~~I~~~i~~  364 (371)
                      |+||++...+.         +.|+.+||.   .|+|.+++..+|.+.++.|.++|..
T Consensus       142 ~~Vgvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~~~~~L~~i~~~l~~~ic~  198 (213)
T 1pt6_A          142 FSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFA  198 (213)
T ss_dssp             EEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC
T ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf             999974765545433324699999986699854089808999999999999999724