HHsearch results for GI: 254780833 and protein with PDBid: 1pt6_A
>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.83 E-value=2.5e-19 Score=133.75 Aligned_cols=180 Identities=17% Similarity=0.282 Sum_probs=135.3
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHH
Q ss_conf 134674069985276311566787214898999998750023355553110479878863674178166655--878999
Q gi|254780833|r 164 KSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQ 241 (371)
Q Consensus 164 ~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~ 241 (371)
++..++|++|++|.|+||.. .+..++++..+++.+... ....|++++.|++.+....+|+. +...+.
T Consensus 3 eC~~~~DivfvlD~S~S~~~--------f~~~k~f~~~~i~~~~~~---~~~~rv~vv~y~~~~~~~~~l~~~~~~~~~~ 71 (213)
T 1pt6_A 3 ECSTQLDIVIVLDGSNSIYP--------WDSVTAFLNDLLKRMDIG---PKQTQVGIVQYGENVTHEFNLNKYSSTEEVL 71 (213)
T ss_dssp ----CEEEEEEEECCTTCCC--------HHHHHHHHHHHHTTSCBS---TTSBEEEEEEESSSEEEEECTTTCSSHHHHH
T ss_pred CCCCCEEEEEEEECCCCCCC--------HHHHHHHHHHHHHHHCCC---CCCCEEEEEEEEEEEEEEECCCCCCCHHHHH
T ss_conf 79984489999979888878--------899999999999972448---8773788999742368997765567799999
Q ss_pred HHHHCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 99740156887--4564237889999874211012346777666169999840458888889789999999999789879
Q gi|254780833|r 242 EKINRLIFGST--TKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIV 319 (371)
Q Consensus 242 ~~i~~l~~~g~--T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i 319 (371)
..++.+...++ |+...++.++...+..... ...++.+|++||+|||..++. .......+.+|+.||+|
T Consensus 72 ~~i~~~~~~~g~~t~~~~al~~a~~~~~~~~~------g~R~~~~k~villTDG~~~d~----~~~~~~~~~lk~~gi~v 141 (213)
T 1pt6_A 72 VAAKKIVQRGGRQTMTALGTDTARKEAFTEAR------GARRGVKKVMVIVTDGESHDN----HRLKKVIQDCEDENIQR 141 (213)
T ss_dssp HHHHTCCCCCCSSCCHHHHHHHHHHTTTSGGG------TCCTTCEEEEEEEESSCCSCS----HHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC------CCCCCCEEEEEEEECCCCCCC----HHHHHHHHHHHHCCCEE
T ss_conf 99877775078410021234344432013224------787786689999846987884----15999999999889999
Q ss_pred EEEEECCCCCH---------HHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 99994186427---------989983389---8089828989999999999996400
Q gi|254780833|r 320 YAIGVQAEAAD---------QFLKNCASP---DRFYSVQNSRKLHDAFLRIGKEMVK 364 (371)
Q Consensus 320 ~tIg~~~~~~~---------~~l~~cAs~---~~~y~~~~~~~L~~af~~I~~~i~~ 364 (371)
|+||++...+. +.|+.+||. .|+|.+++..+|.+.++.|.++|..
T Consensus 142 ~~Vgvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~~~~~L~~i~~~l~~~ic~ 198 (213)
T 1pt6_A 142 FSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFA 198 (213)
T ss_dssp EEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC
T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 999974765545433324699999986699854089808999999999999999724