HHsearch results for GI: 254780833 and protein with PDBid: 2nut_A
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=90.18 E-value=0.71 Score=22.32 Aligned_cols=171 Identities=15% Similarity=0.166 Sum_probs=93.9
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEEC--------------
Q ss_conf 467406998527631156678721489899999875002335555311047987886367417816--------------
Q gi|254780833|r 166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTF-------------- 231 (371)
Q Consensus 166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-------------- 231 (371)
..|.-.+||+|.|... ..++.+++.+...++.+.. ..++|+++|.......-
T Consensus 130 ~~pp~~vFvID~s~~~--------~~l~~l~~sl~~~l~~lp~------~~~VglITf~~~V~~y~l~~~~~~~~~vf~g 195 (769)
T 2nut_A 130 QMPLIFLYVVDTCMED--------EDLQALKESMQMSLSLLPP------TALVGLITFGRMVQVHELGCEGISKSYVFRG 195 (769)
T ss_dssp CCCCEEEEEEECCSCH--------HHHHHHHHHHHHHHTTSCT------TCEEEEEEESSEEEEEESSCCSSCEEEEEET
T ss_pred CCCCEEEEEEECCCCH--------HHHHHHHHHHHHHHHHCCC------CCEEEEEEECCEEEEEECCCCCCCCCEECCC
T ss_conf 9997899999887665--------7899999999999972898------6559999957769999668877663202168
Q ss_pred ----------------------------------------CCCCCHHHHHHHHHCCCCCCC---------CCCCCHHHHH
Q ss_conf ----------------------------------------665587899999740156887---------4564237889
Q gi|254780833|r 232 ----------------------------------------PLAWGVQHIQEKINRLIFGST---------TKSTPGLEYA 262 (371)
Q Consensus 232 ----------------------------------------~lt~~~~~~~~~i~~l~~~g~---------T~~~~~~~~~ 262 (371)
|+......+.+.++.|..... .....++..+
T Consensus 196 ~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~fl~~~~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A 275 (769)
T 2nut_A 196 TKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIA 275 (769)
T ss_dssp TSCCCSHHHHHHHC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 75446787765337655665444566534578863310576899999999999985405666643347754407899999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC---------------------------HHHHHHHHHHHHHC
Q ss_conf 999874211012346777666169999840458888889---------------------------78999999999978
Q gi|254780833|r 263 YNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID---------------------------NKESLFYCNEAKRR 315 (371)
Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~---------------------------~~~~~~~c~~~k~~ 315 (371)
...+..... ..+ -.|++++.|.+|.|... ..--..++..+...
T Consensus 276 ~~ll~~~~~-----~~G-----grI~~F~sg~pt~GpG~l~~~~~~~~~rs~~di~k~~~~~~~~a~~fY~~la~~~~~~ 345 (769)
T 2nut_A 276 VGLLECTFP-----NTG-----ARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATT 345 (769)
T ss_dssp HHHHHHHSC-----SSC-----CEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC-----CCC-----CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHC
T ss_conf 999986436-----898-----7899994799976885331434343346644543220111460789999999999977
Q ss_pred CCEEEEEEECCC-CCHHHHHHHC--CCCEEEEECC--HHHHHHHHHHHHH
Q ss_conf 987999994186-4279899833--8980898289--8999999999999
Q gi|254780833|r 316 GAIVYAIGVQAE-AADQFLKNCA--SPDRFYSVQN--SRKLHDAFLRIGK 360 (371)
Q Consensus 316 gi~i~tIg~~~~-~~~~~l~~cA--s~~~~y~~~~--~~~L~~af~~I~~ 360 (371)
||.|-.+.+..+ .+-..|+.|+ |+|..|..++ .....+.|..+.+
T Consensus 346 ~isvDiF~~~~~~~~l~~m~~l~~~TGG~v~~~~~F~~~~~~~~l~~~~~ 395 (769)
T 2nut_A 346 GHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFT 395 (769)
T ss_dssp TCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTTC
T ss_pred CEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 95899997157555707576577616846998379860443999999987