HHsearch results for GI: 254780833 and protein with PDBid: 2nut_A

>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=90.18  E-value=0.71  Score=22.32  Aligned_cols=171  Identities=15%  Similarity=0.166  Sum_probs=93.9

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEEC--------------
Q ss_conf             467406998527631156678721489899999875002335555311047987886367417816--------------
Q gi|254780833|r  166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTF--------------  231 (371)
Q Consensus       166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--------------  231 (371)
                      ..|.-.+||+|.|...        ..++.+++.+...++.+..      ..++|+++|.......-              
T Consensus       130 ~~pp~~vFvID~s~~~--------~~l~~l~~sl~~~l~~lp~------~~~VglITf~~~V~~y~l~~~~~~~~~vf~g  195 (769)
T 2nut_A          130 QMPLIFLYVVDTCMED--------EDLQALKESMQMSLSLLPP------TALVGLITFGRMVQVHELGCEGISKSYVFRG  195 (769)
T ss_dssp             CCCCEEEEEEECCSCH--------HHHHHHHHHHHHHHTTSCT------TCEEEEEEESSEEEEEESSCCSSCEEEEEET
T ss_pred             CCCCEEEEEEECCCCH--------HHHHHHHHHHHHHHHHCCC------CCEEEEEEECCEEEEEECCCCCCCCCEECCC
T ss_conf             9997899999887665--------7899999999999972898------6559999957769999668877663202168


Q ss_pred             ----------------------------------------CCCCCHHHHHHHHHCCCCCCC---------CCCCCHHHHH
Q ss_conf             ----------------------------------------665587899999740156887---------4564237889
Q gi|254780833|r  232 ----------------------------------------PLAWGVQHIQEKINRLIFGST---------TKSTPGLEYA  262 (371)
Q Consensus       232 ----------------------------------------~lt~~~~~~~~~i~~l~~~g~---------T~~~~~~~~~  262 (371)
                                                              |+......+.+.++.|.....         .....++..+
T Consensus       196 ~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~fl~~~~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A  275 (769)
T 2nut_A          196 TKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIA  275 (769)
T ss_dssp             TSCCCSHHHHHHHC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             75446787765337655665444566534578863310576899999999999985405666643347754407899999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC---------------------------HHHHHHHHHHHHHC
Q ss_conf             999874211012346777666169999840458888889---------------------------78999999999978
Q gi|254780833|r  263 YNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID---------------------------NKESLFYCNEAKRR  315 (371)
Q Consensus       263 ~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~---------------------------~~~~~~~c~~~k~~  315 (371)
                      ...+.....     ..+     -.|++++.|.+|.|...                           ..--..++..+...
T Consensus       276 ~~ll~~~~~-----~~G-----grI~~F~sg~pt~GpG~l~~~~~~~~~rs~~di~k~~~~~~~~a~~fY~~la~~~~~~  345 (769)
T 2nut_A          276 VGLLECTFP-----NTG-----ARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATT  345 (769)
T ss_dssp             HHHHHHHSC-----SSC-----CEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCC-----CCC-----CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHC
T ss_conf             999986436-----898-----7899994799976885331434343346644543220111460789999999999977


Q ss_pred             CCEEEEEEECCC-CCHHHHHHHC--CCCEEEEECC--HHHHHHHHHHHHH
Q ss_conf             987999994186-4279899833--8980898289--8999999999999
Q gi|254780833|r  316 GAIVYAIGVQAE-AADQFLKNCA--SPDRFYSVQN--SRKLHDAFLRIGK  360 (371)
Q Consensus       316 gi~i~tIg~~~~-~~~~~l~~cA--s~~~~y~~~~--~~~L~~af~~I~~  360 (371)
                      ||.|-.+.+..+ .+-..|+.|+  |+|..|..++  .....+.|..+.+
T Consensus       346 ~isvDiF~~~~~~~~l~~m~~l~~~TGG~v~~~~~F~~~~~~~~l~~~~~  395 (769)
T 2nut_A          346 GHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFT  395 (769)
T ss_dssp             TCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTTC
T ss_pred             CEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             95899997157555707576577616846998379860443999999987