HHsearch results for GI: 254780833 and protein with PDBid: 2vdr_B
>2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing, platelet integrin ALPHAIIBBETA3, polymorphism, glycoprotein, cell adhesion, calcium; HET: NAG MAN; 2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=99.11 E-value=2e-08 Score=67.90 Aligned_cols=193 Identities=13% Similarity=0.155 Sum_probs=113.8
Q ss_pred EEECCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCC----------
Q ss_conf 2210001346740699852763115667872148989999987500233555531104798788636741----------
Q gi|254780833|r 158 SVKISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKI---------- 227 (371)
Q Consensus 158 ~~~~~~~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---------- 227 (371)
..........|+|++|++|.|+||.. .++.+++....+.+.+... ....|+|+..|.+..
T Consensus 101 ~~~v~~~~~yPvDL~fLmD~TgSM~d-------dI~~lk~~~~~l~~~l~~~---t~~~rlGfgsf~Dk~~~p~~~~~~~ 170 (461)
T 2vdr_B 101 SIQVRQVEDYPVDIYYLMDLSYSMKD-------DLWSIQNLGTKLATQMRKL---TSNLRIGFGAFVDKPVSPYMYISPP 170 (461)
T ss_dssp EEEEECCSCCCEEEEEEEECSGGGGG-------GHHHHHHHHHHHHHHHHHH---CTTEEEEEEEECCCSSTTTSCCCST
T ss_pred EEEEECCCCCCCCEEEEEECCCCHHH-------HHHHHHHHHHHHHHHHHHH---CCCCEEEEEEEEEECCCCCCCCCCH
T ss_conf 99875167787447999947746699-------9999999999999999852---8884799999897347764444666
Q ss_pred --------------------EEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH-HHHCCCCCCCCCCCCCEE
Q ss_conf --------------------78166655878999997401568874564237889999874-211012346777666169
Q gi|254780833|r 228 --------------------VQTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFD-AKEKLEHIAKGHDDYKKY 286 (371)
Q Consensus 228 --------------------~~~~~lt~~~~~~~~~i~~l~~~g~T~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~k~ 286 (371)
....|||.+...+...++.+.+.||-...++..-|..+..- .+.-.| +++.+|+
T Consensus 171 ~~l~~Pc~~~~~~c~~~f~~~~~l~lT~d~~~F~~~V~~~~~sGggD~PE~~~dAL~qa~vc~~~igW-----R~~a~ri 245 (461)
T 2vdr_B 171 EALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGW-----RNDASHL 245 (461)
T ss_dssp HHHHCTTGGGTSCCCCCCSEEEEEEEESCHHHHHHHHHTCCCCCCSBSSBCHHHHHHHHHHCHHHHTC-----CTTSEEE
T ss_pred HHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCEECCCCCCCCCCHHHHHHHHHHHHHHCCC-----CCCCEEE
T ss_conf 55048664678776787330452468878999999875036547986776689999999986310787-----8687599
Q ss_pred EEEEECCCCC--------------CC--------------CCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHC
Q ss_conf 9998404588--------------88--------------88978999999999978987-9999941864279899833
Q gi|254780833|r 287 IIFLTDGENS--------------SP--------------NIDNKESLFYCNEAKRRGAI-VYAIGVQAEAADQFLKNCA 337 (371)
Q Consensus 287 ivl~TDG~~~--------------~~--------------~~~~~~~~~~c~~~k~~gi~-i~tIg~~~~~~~~~l~~cA 337 (371)
+||+||...+ ++ ..+.+...++.+.+++++|. ||+|.-..-.-.+.|...-
T Consensus 246 lvliTDA~~H~agDgkl~giv~pnDg~Chl~~~~~y~~s~~~DYPSv~ql~~~l~e~~i~pIFAVt~~~~~~Y~~L~~~i 325 (461)
T 2vdr_B 246 LVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELI 325 (461)
T ss_dssp EEEEESSCBCCTTGGGGGTCCSCCCCCCCCCTTSBCTTTTTSCCCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHTTS
T ss_pred EEEECCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHC
T ss_conf 99989788433687544104438876315379887665555778999999999986496799996553222689999746
Q ss_pred CCCEEEE-ECCHHHHHHHHHHHHHHHHHE
Q ss_conf 8980898-289899999999999964000
Q gi|254780833|r 338 SPDRFYS-VQNSRKLHDAFLRIGKEMVKQ 365 (371)
Q Consensus 338 s~~~~y~-~~~~~~L~~af~~I~~~i~~~ 365 (371)
.++..-. .++...+.+..++--++|.+.
T Consensus 326 ~~s~vg~L~~dSsNiv~LI~~aY~~i~s~ 354 (461)
T 2vdr_B 326 PGTTVGVLSMDSSNVLQLIVDAYGKIRSK 354 (461)
T ss_dssp TTCEEEEESSCCHHHHHHHHHHHHTCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHCE
T ss_conf 87536774477376999999999876307