HHsearch results for GI: 254780833 and protein with PDBid: 3eh1_A
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=94.55 E-value=0.18 Score=25.89 Aligned_cols=174 Identities=17% Similarity=0.098 Sum_probs=102.4
Q ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEE----------------
Q ss_conf 6740699852763115667872148989999987500233555531104798788636741781----------------
Q gi|254780833|r 167 IGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQT---------------- 230 (371)
Q Consensus 167 ~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~---------------- 230 (371)
.+.-.+|++|.|...... ..+..+.+++...++..... ...++|+++|+......
T Consensus 159 ~pp~~vfvID~S~~a~~~-----g~l~~~~~ai~~~l~~l~~~----~~~~VglItf~~~V~~~~~~~~~~~~~~~v~~d 229 (751)
T 3eh1_A 159 QPAVYLFVLDVSHNAVEA-----GYLTILCQSLLENLDKLPGD----SRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSD 229 (751)
T ss_dssp CCCEEEEEEECSHHHHHH-----THHHHHHHHHHHHTTTSSCC----TTCEEEEEEESSSEEEEECCTTCSSCEEEEESC
T ss_pred CCCEEEEEEECCHHHHHH-----HHHHHHHHHHHHHHHHCCCC----CCEEEEEEEECCEEEEEECCCCCCCCEEEEECC
T ss_conf 986899999896578661-----49999999999999747788----760899999899789984689866532674148
Q ss_pred -------------CCCCCCHHHHHHHHHCCCC------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEE
Q ss_conf -------------6665587899999740156------887456423788999987421101234677766616999984
Q gi|254780833|r 231 -------------FPLAWGVQHIQEKINRLIF------GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLT 291 (371)
Q Consensus 231 -------------~~lt~~~~~~~~~i~~l~~------~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~T 291 (371)
.++......+...++.+.. ..++....|+..+...+.. .+ -.|++++
T Consensus 230 ~~~~~~p~~~~~l~~l~e~~~~i~~~L~~L~~~~~~~~~~~~~lg~Al~~a~~~l~~---------~g-----G~i~~f~ 295 (751)
T 3eh1_A 230 IDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSP---------TG-----GRVSVFQ 295 (751)
T ss_dssp TTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTT---------TC-----EEEEEEE
T ss_pred CCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH---------CC-----CEEEEEE
T ss_conf 631246787646843799899999999854554148877641089999999998873---------29-----7599995
Q ss_pred CCCCCCCCCC----------------------HHHHHHHHHHHHHCCCEEEEEEECCCC-CHHHHHHHC--CCCEEEEEC
Q ss_conf 0458888889----------------------789999999999789879999941864-279899833--898089828
Q gi|254780833|r 292 DGENSSPNID----------------------NKESLFYCNEAKRRGAIVYAIGVQAEA-ADQFLKNCA--SPDRFYSVQ 346 (371)
Q Consensus 292 DG~~~~~~~~----------------------~~~~~~~c~~~k~~gi~i~tIg~~~~~-~~~~l~~cA--s~~~~y~~~ 346 (371)
+|.+|.|... ..--..++..+.+.||.|-.+.+..+. +-..|..++ |+|..|.-+
T Consensus 296 ~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdif~~s~~~~~l~~l~~l~~~TGG~v~~~~ 375 (751)
T 3eh1_A 296 TQLPSLGAGLLQSREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYP 375 (751)
T ss_dssp CSCCCSSTTCCCCCCCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECT
T ss_pred CCCCCCCCCCEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf 67997889832126676667854567651405789999999999769479999945877787998889864786599936
Q ss_pred C------HHHHHHHHHHHHHHHH
Q ss_conf 9------8999999999999640
Q gi|254780833|r 347 N------SRKLHDAFLRIGKEMV 363 (371)
Q Consensus 347 ~------~~~L~~af~~I~~~i~ 363 (371)
+ ..++...+.++.+.++
T Consensus 376 ~f~~~~~~~~~~~l~~dl~~~l~ 398 (751)
T 3eh1_A 376 SFHYTHNPSQAEKLQKDLKRYLT 398 (751)
T ss_dssp TCBTTTBHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 86643365789999999998755