Query         gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 371
No_of_seqs    156 out of 2153
Neff          10.1
Searched_HMMs 23785
Date          Tue May 31 20:48:13 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780833.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2odp_A Complement C2; C3/C5 co  99.9 4.4E-23 1.8E-27  156.4  16.7  187  165-360     6-211 (509)
  2 1rrk_A Complement factor B; BB  99.9 5.9E-22 2.5E-26  149.6  14.6  183  168-362     1-205 (497)
  3 1q0p_A Complement factor B; VO  99.9 9.2E-22 3.9E-26  148.4  13.3  190  164-365    11-222 (223)
  4 1shu_X Anthrax toxin receptor   99.9 6.5E-20 2.7E-24  137.2  17.7  175  165-363     3-182 (182)
  5 3ibs_A Conserved hypothetical   99.8 1.6E-19 6.8E-24  134.9  17.6  177  165-365     8-215 (218)
  6 3hrz_D Complement factor B; se  99.8 2.8E-19 1.2E-23  133.4  17.0  190  164-365   239-450 (741)
  7 1v7p_C Integrin alpha-2; snake  99.8 2.9E-19 1.2E-23  133.3  16.0  180  165-365     3-198 (200)
  8 1pt6_A Integrin alpha-1; X-RAY  99.8 2.5E-19   1E-23  133.8  15.6  180  164-364     3-198 (213)
  9 3gxb_A VON willebrand factor;   99.8 1.5E-18 6.2E-23  129.1  15.9  170  168-363     2-175 (184)
 10 2b2x_A Integrin alpha-1; compu  99.8   6E-19 2.5E-23  131.4  13.7  181  164-365    18-214 (223)
 11 1atz_A VON willebrand factor;   99.8   3E-18 1.3E-22  127.2  16.5  177  165-362     2-187 (189)
 12 1n3y_A Integrin alpha-X; alpha  99.8 1.3E-18 5.5E-23  129.4  12.2  180  165-364     6-195 (198)
 13 1mf7_A Integrin alpha M; cell   99.8 2.2E-18 9.4E-23  128.0  11.8  178  166-363     3-190 (194)
 14 1ijb_A VON willebrand factor;   99.8 7.4E-17 3.1E-21  118.8  18.6  182  165-365    10-198 (202)
 15 2x5n_A SPRPN10, 26S proteasome  99.7 3.9E-16 1.6E-20  114.5  14.8  152  170-337     4-156 (192)
 16 2xgg_A Microneme protein 2; A/  99.6   2E-14 8.5E-19  104.1  14.7  155  164-337    13-172 (178)
 17 1mjn_A Integrin alpha-L; rossm  99.6   1E-14 4.2E-19  105.9  10.3  169  167-362     1-179 (179)
 18 2x31_A Magnesium-chelatase 60   99.5 1.2E-16 5.2E-21  117.5  -1.9  170  167-357     4-185 (189)
 19 2iue_A Pactolus I-domain; memb  99.5 4.7E-12   2E-16   89.8  16.5  163  166-345     1-193 (212)
 20 3k6s_A Integrin alpha-X; cell   99.4 5.1E-13 2.2E-17   95.6   7.7  180  166-365   128-317 (1095)
 21 2vdr_B Integrin beta-3; cell a  99.1   2E-08 8.4E-13   67.9  18.1  193  158-365   101-354 (461)
 22 3fcs_B Integrin beta-3; beta p  99.1 1.6E-08 6.7E-13   68.5  15.8  192  158-363   101-356 (690)
 23 2nvo_A RO sixty-related protei  98.8 1.1E-07 4.6E-12   63.4  13.6  137  166-328   360-501 (535)
 24 3k6s_B Integrin beta-2; cell r  98.7 1.7E-08   7E-13   68.4   5.9  191  158-363    94-346 (687)
 25 1jey_B KU80; double-strand DNA  98.7 7.9E-07 3.3E-11   58.3  13.9  146  170-328     9-170 (565)
 26 1yvr_A RO autoantigen, 60-kDa   98.5 8.4E-06 3.6E-10   52.1  14.8  137  166-328   366-505 (538)
 27 1jey_A KU70; double-strand DNA  96.7   0.025   1E-06   31.1  12.4  145  170-327    37-208 (609)
 28 3efo_B SEC24 related gene fami  96.3   0.044 1.8E-06   29.6  18.9  166  166-348   175-402 (770)
 29 3eh2_A Protein transport prote  94.7    0.17   7E-06   26.1  19.6  181  166-362   171-415 (766)
 30 3eh1_A Protein transport prote  94.5    0.18 7.7E-06   25.9  18.7  174  167-363   159-398 (751)
 31 1m2v_B SEC24, protein transpor  94.2    0.22 9.2E-06   25.4  18.4  175  167-363   302-549 (926)
 32 1m2o_A SEC23, protein transpor  94.0    0.24 9.9E-06   25.2  15.5  170  168-361   121-390 (768)
 33 1pcx_A Protein transport prote  91.8     0.5 2.1E-05   23.2  18.8  177  166-364   185-434 (810)
 34 2nut_A Protein transport prote  90.2    0.71   3E-05   22.3  16.3  171  166-360   130-395 (769)
 35 1uls_A Putative 3-oxoacyl-acyl  43.6      12 0.00051   14.9   5.4   51  307-360   161-221 (245)
 36 1zk4_A R-specific alcohol dehy  42.4      13 0.00053   14.8   6.4   54  312-369   175-244 (251)
 37 2k21_A Potassium voltage-gated  40.8      13 0.00056   14.6   2.7   39    7-45     41-79  (138)
 38 2bgk_A Rhizome secoisolaricire  35.0      16 0.00069   14.1   7.0   60  307-369   180-258 (278)
 39 2hqb_A Transcriptional activat  33.1      18 0.00074   13.9   5.0   22  349-370   271-293 (296)
 40 3grp_A 3-oxoacyl-(acyl carrier  30.8      19 0.00081   13.7   6.9   60  307-369   186-259 (266)
 41 2w8t_A SPT, serine palmitoyltr  27.8      13 0.00055   14.7   0.5   60  302-363   356-416 (427)
 42 1nff_A Putative oxidoreductase  25.9      24 0.00099   13.1   6.9   50  307-360   166-221 (260)
 43 3o38_A Short chain dehydrogena  23.2      27  0.0011   12.8   6.4   59  307-369   187-261 (266)
 44 2fqx_A Membrane lipoprotein TM  23.2      27  0.0011   12.8   6.3   22  348-369   288-309 (318)
 45 2o23_A HADH2 protein; HSD17B10  22.7      27  0.0011   12.8   8.8   51  307-360   183-244 (265)
 46 3op4_A 3-oxoacyl-[acyl-carrier  22.4      28  0.0012   12.7   6.8   60  307-369   168-241 (248)
 47 2b4q_A Rhamnolipids biosynthes  22.3      28  0.0012   12.7   5.5   60  307-369   195-270 (276)
 48 2qip_A Protein of unknown func  22.2      28  0.0012   12.7   5.8   52  283-347   109-161 (165)
 49 1xg5_A ARPG836; short chain de  22.2      28  0.0012   12.7   6.8   54  307-361   200-263 (279)
 50 3imf_A Short chain dehydrogena  21.9      28  0.0012   12.7   6.5   59  308-369   170-246 (257)
 51 3gvc_A Oxidoreductase, probabl  21.7      28  0.0012   12.6   7.6   20  307-326   188-207 (277)
 52 2a4k_A 3-oxoacyl-[acyl carrier  21.0      29  0.0012   12.5   6.9   53  306-361   161-223 (263)
 53 1srv_A Protein (groel (HSP60 c  20.9      30  0.0012   12.5   1.4   50  304-353    66-120 (145)
 54 1k2w_A Sorbitol dehydrogenase;  20.6      30  0.0013   12.5   7.1   20  307-326   165-184 (256)

No 1  
>2odp_A Complement C2; C3/C5 convertase, complement serine protease, human complement system, glycoprotein, SP, VWFA, hydrolase; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.91  E-value=4.4e-23  Score=156.40  Aligned_cols=187  Identities=19%  Similarity=0.229  Sum_probs=145.6

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC----CHHHH
Q ss_conf             34674069985276311566787214898999998750023355553110479878863674178166655----87899
Q gi|254780833|r  165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW----GVQHI  240 (371)
Q Consensus       165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~----~~~~~  240 (371)
                      ....+|++|++|.|+||..      ++++.+++++..+++.+...+   ..+|++++.|++.+....+|+.    +...+
T Consensus         6 ~~g~~DivfvlD~SgSm~~------~~~~~~k~~~~~~i~~~~~~~---~~~rv~lv~fs~~~~~~~~l~~~~~~~~~~~   76 (509)
T 2odp_A            6 RSGHLNLYLLLDASQSVSE------NDFLIFKESASLMVDRIFSFE---INVSVAIITFASEPKVLMSVLNDNSRDMTEV   76 (509)
T ss_dssp             SSSEEEEEEEEECSTTSCH------HHHHHHHHHHHHHHHHHHTTC---CCEEEEEEEESSSEEEEECTTSGGGGCHHHH
T ss_pred             CCCCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHCCCC---CCCEEEEEEECCEEEEEEECCCCCCCCHHHH
T ss_conf             7898659999978699998------999999999999999614489---9748999998883579971788875579999


Q ss_pred             HHHHHCCC-----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH----
Q ss_conf             99974015-----688745642378899998742110123467776661699998404588888897899999999----
Q gi|254780833|r  241 QEKINRLI-----FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNE----  311 (371)
Q Consensus       241 ~~~i~~l~-----~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~----  311 (371)
                      ...|+.+.     .+|+|++..|+..+++.+..............++.+|+|||||||.+|.+.........+.+.    
T Consensus        77 ~~~i~~i~~~~~~~~g~T~~~~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~iillTDG~~n~g~~~~~~~~~~~~~~~~~  156 (509)
T 2odp_A           77 ISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNIN  156 (509)
T ss_dssp             HHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCC
T ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99997173456778997779999999999999876430235566678862999994887566998489999987666665


Q ss_pred             -HHHCCCEEEEEEECC-CCCHHHHHHHCC-C---CEEEEECCHHHHHHHHHHHHH
Q ss_conf             -997898799999418-642798998338-9---808982898999999999999
Q gi|254780833|r  312 -AKRRGAIVYAIGVQA-EAADQFLKNCAS-P---DRFYSVQNSRKLHDAFLRIGK  360 (371)
Q Consensus       312 -~k~~gi~i~tIg~~~-~~~~~~l~~cAs-~---~~~y~~~~~~~L~~af~~I~~  360 (371)
                       +++++|.||+||+|. +.+...|+.+|| +   .|+|.+++.++|.++|++|-.
T Consensus       157 ~~~~~~v~i~~igvG~~~~d~~~L~~ias~~~~~~h~f~~~~~~~L~~~~~~i~~  211 (509)
T 2odp_A          157 QKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLD  211 (509)
T ss_dssp             STTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHEE
T ss_pred             HHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCC
T ss_conf             6630696599999588645899999986599997159994888899999974044


No 2  
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.88  E-value=5.9e-22  Score=149.60  Aligned_cols=183  Identities=19%  Similarity=0.226  Sum_probs=139.5

Q ss_pred             CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCC----CCHHHHHHH
Q ss_conf             7406998527631156678721489899999875002335555311047987886367417816665----587899999
Q gi|254780833|r  168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLA----WGVQHIQEK  243 (371)
Q Consensus       168 ~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt----~~~~~~~~~  243 (371)
                      .+|++|++|.|+||+.      ++++.+++++..+++.+...   ...+|++++.|++.+....+++    .+...++..
T Consensus         1 ~lDivfvlD~S~Sm~~------~~~~~~k~~~~~~i~~~~~~---~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~   71 (497)
T 1rrk_A            1 SMNIYLVLDGSDSIGA------SNFTGAKKVLVNLIEKVASY---GVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQ   71 (497)
T ss_dssp             CEEEEEEEECSTTTCH------HHHHHHHHHHHHHHHHHHHT---TCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCCCC---CCCEEEEEEEECCEEEEEECCCCCCCCCHHHHHHH
T ss_conf             9458999957799986------99999999999999853658---99609999998781789973798775689999999


Q ss_pred             HHCCC-----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH---------
Q ss_conf             74015-----6887456423788999987421101234677766616999984045888888978999999---------
Q gi|254780833|r  244 INRLI-----FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYC---------  309 (371)
Q Consensus       244 i~~l~-----~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c---------  309 (371)
                      |+.+.     .+++|++..|+.++.+.+......   ......+.+|+|||||||.+|.+.........+-         
T Consensus        72 i~~i~~~~~~~~g~T~~~~al~~a~~~~~~~~~~---~~~~~~~~~~viillTDG~~n~~~~p~~~~~~i~~~~~~~~~~  148 (497)
T 1rrk_A           72 LNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDV---PPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDR  148 (497)
T ss_dssp             HHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC---------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC
T ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC---CCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9608566886888757999999999998652014---7555567875999997976777898789999999878777777


Q ss_pred             HHHHHCCCEEEEEEECCCCCHHHHHHHCC-C-C--EEEEECCHHHHHHHHHHHHHHH
Q ss_conf             99997898799999418642798998338-9-8--0898289899999999999964
Q gi|254780833|r  310 NEAKRRGAIVYAIGVQAEAADQFLKNCAS-P-D--RFYSVQNSRKLHDAFLRIGKEM  362 (371)
Q Consensus       310 ~~~k~~gi~i~tIg~~~~~~~~~l~~cAs-~-~--~~y~~~~~~~L~~af~~I~~~i  362 (371)
                      ..++++||.||+||+|.+.+...|+.+|+ + +  |||.+++.++|.++|..+.++-
T Consensus       149 ~~~~~~gi~i~~vgiG~~~d~~~L~~iAs~~~~~~~~f~~~d~~~L~~~~~~~~~~~  205 (497)
T 1rrk_A          149 KNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFYQMIDES  205 (497)
T ss_dssp             -CCCGGGEEEEEEECSSSCCHHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHHSCGG
T ss_pred             HHHHHCCEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCC
T ss_conf             668767907999736886799999987517898504999499999999875302466


No 3  
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.88  E-value=9.2e-22  Score=148.41  Aligned_cols=190  Identities=18%  Similarity=0.227  Sum_probs=143.9

Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC----CHHH
Q ss_conf             134674069985276311566787214898999998750023355553110479878863674178166655----8789
Q gi|254780833|r  164 KSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW----GVQH  239 (371)
Q Consensus       164 ~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~----~~~~  239 (371)
                      +...++|++|++|.||||..      ++++.+++++..+++.+...   ....|++++.|++.+....|++.    +...
T Consensus        11 ~~~~~~DivfvlD~SgSm~~------~~~~~~k~~~~~li~~~~~~---~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~~   81 (223)
T 1q0p_A           11 DPSGSMNIYLVLDGSDSIGA------SNFTGAKKSLVNLIEKVASY---GVKPRYGLVTYATYPKIWVKVSEADSSNADW   81 (223)
T ss_dssp             ----CEEEEEEEECSTTTCH------HHHHHHHHHHHHHHHHHHTT---TCCCEEEEEEESSSEEEEECTTSGGGGCHHH
T ss_pred             CCCCCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEECCCEEEEECCCCCCHHHHHH
T ss_conf             89898618999948888882------88999999999999973368---8775899999759378997078630245678


Q ss_pred             HHHHHHCCC-----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH----
Q ss_conf             999974015-----68874564237889999874211012346777666169999840458888889789999999----
Q gi|254780833|r  240 IQEKINRLI-----FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCN----  310 (371)
Q Consensus       240 ~~~~i~~l~-----~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~----  310 (371)
                      +...++.+.     .+|+|++..++..+...+.....   ..........|++||+|||.++.+.........+.+    
T Consensus        82 ~~~~~~~i~~~~~~~~g~T~~~~Al~~a~~~~~~~~~---~~~~~~~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~~~~  158 (223)
T 1q0p_A           82 VTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDD---VPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYI  158 (223)
T ss_dssp             HHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTS---SCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             9999985454216688897599999999999864011---4666677774289997688767789828999999863346


Q ss_pred             -----HHHHCCCEEEEEEECCCCCHHHHHHHCCC----CEEEEECCHHHHHHHHHHHHHHHHHE
Q ss_conf             -----99978987999994186427989983389----80898289899999999999964000
Q gi|254780833|r  311 -----EAKRRGAIVYAIGVQAEAADQFLKNCASP----DRFYSVQNSRKLHDAFLRIGKEMVKQ  365 (371)
Q Consensus       311 -----~~k~~gi~i~tIg~~~~~~~~~l~~cAs~----~~~y~~~~~~~L~~af~~I~~~i~~~  365 (371)
                           .++..|+.+|+||++.+.+...|+.+|+.    .+||.+++.++|.++|.+|..+...+
T Consensus       159 ~~~~~~~~~~g~~i~~igvg~~~~~~~L~~iAs~~~~~~~~~~~~d~~~L~~~~~~i~~e~~s~  222 (223)
T 1q0p_A          159 GKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSL  222 (223)
T ss_dssp             SCBTTBCCGGGEEEEEEECSSCCCHHHHHHHSCCCTTCCCEEETTC-----------------C
T ss_pred             HHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf             7999998767965999736875699999999749899747999089999999999999861478


No 4  
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.85  E-value=6.5e-20  Score=137.25  Aligned_cols=175  Identities=21%  Similarity=0.231  Sum_probs=133.9

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHH
Q ss_conf             34674069985276311566787214898999998750023355553110479878863674178166655878999997
Q gi|254780833|r  165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKI  244 (371)
Q Consensus       165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i  244 (371)
                      +..++|++|++|.|+||...|       ...++.+..++..+.     ....|++++.|++.+....|++++...++..+
T Consensus         3 C~~~~DivfliD~S~Sm~~~~-------~~~k~~~~~~~~~~~-----~~~~rvglv~fs~~~~~~~~~~~~~~~~~~~l   70 (182)
T 1shu_X            3 CRRAFDLYFVLDKSGSVANNW-------IEIYNFVQQLAERFV-----SPEMRLSFIVFSSQATIILPLTGDRGKISKGL   70 (182)
T ss_dssp             CBSCEEEEEEEECSGGGGGGH-------HHHHHHHHHHHHHCC-----CTTEEEEEEEESSSEEEEEEEECCHHHHHHHH
T ss_pred             CCCCEEEEEEEECCCCCCCCH-------HHHHHHHHHHHHHHC-----CCCCEEEEEEECCCCEEECCCCCCHHHHHHHH
T ss_conf             799746999993897843279-------999999999999735-----89987999996045415246435578899988


Q ss_pred             H---CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             4---0156887456423788999987421101234677766616999984045888888978999999999978987999
Q gi|254780833|r  245 N---RLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYA  321 (371)
Q Consensus       245 ~---~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~t  321 (371)
                      .   .+.+.|+|++..++..+...+....         +....|++|+||||..+.+.  +......++.+|+.||.||+
T Consensus        71 ~~~~~~~~~g~T~~~~al~~~~~~~~~~~---------~~~~~~~ivllTDG~~~~~~--~~~~~~~a~~l~~~gv~v~~  139 (182)
T 1shu_X           71 EDLKRVSPVGETYIHEGLKLANEQIQKAG---------GLKTSSIIIALTDGKLDGLV--PSYAEKEAKISRSLGASVYC  139 (182)
T ss_dssp             HHHHTCCCCSCCCHHHHHHHHHHHHHHHT---------GGGSCEEEEEEECCCCCTTH--HHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHHHC---------CCCCCEEEEEEECCCCCCCC--CHHHHHHHHHHHHCCCEEEE
T ss_conf             87740679998469999999999987503---------67885599999728878886--48999999999978999999


Q ss_pred             EEECCCCCHHHHHHHCC-CCEEEEEC-CHHHHHHHHHHHHHHHH
Q ss_conf             99418642798998338-98089828-98999999999999640
Q gi|254780833|r  322 IGVQAEAADQFLKNCAS-PDRFYSVQ-NSRKLHDAFLRIGKEMV  363 (371)
Q Consensus       322 Ig~~~~~~~~~l~~cAs-~~~~y~~~-~~~~L~~af~~I~~~i~  363 (371)
                      ||++ +.+...|+.+|+ +++.|.+. +.++|.+.+++|.+++.
T Consensus       140 Vgig-~~~~~~L~~ia~~~~~~~~~~~~~~~L~~~~~~i~~~~C  182 (182)
T 1shu_X          140 VGVL-DFEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSC  182 (182)
T ss_dssp             EECS-SCCHHHHHHHSSSGGGEEESSSTTHHHHHHHHHHHHTBC
T ss_pred             EEEC-CCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHC
T ss_conf             9847-548999999858999669934999999999999986239


No 5  
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for structural genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.85  E-value=1.6e-19  Score=134.89  Aligned_cols=177  Identities=20%  Similarity=0.270  Sum_probs=136.4

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHH
Q ss_conf             34674069985276311566787214898999998750023355553110479878863674178166655878999997
Q gi|254780833|r  165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKI  244 (371)
Q Consensus       165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i  244 (371)
                      .+.++|++|++|.||||...... ..|++.++..+..+++....       .|++++.|...+....|++.+.......+
T Consensus         8 ~r~g~divlvvD~SgSM~~~D~~-~~R~~~ak~~~~~~l~~~~~-------~rvglv~F~~~~~~~~~~t~~~~~~~~~~   79 (218)
T 3ibs_A            8 KRKGVEVIIALDISNSMLAQDVQ-PSRLEKAKRLISRLVDELDN-------DKVGMIVFAGDAFTQLPITSDYISAKMFL   79 (218)
T ss_dssp             --CCCEEEEEEECSGGGGCCSSS-SCHHHHHHHHHHHHHHTCSS-------CEEEEEEESSSEEEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCC-------CEEEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf             43795899999798577887778-48999999999999950999-------76999997684420112430677888888


Q ss_pred             HCCC----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             4015----688745642378899998742110123467776661699998404588888897899999999997898799
Q gi|254780833|r  245 NRLI----FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVY  320 (371)
Q Consensus       245 ~~l~----~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~  320 (371)
                      +.+.    +.++|++..++.++...|.           ..+...|+|||+|||.++.+.     .......++..++.+|
T Consensus        80 ~~~~~~~~~~~gT~~~~al~~a~~~l~-----------~~~~~~~~iillSDG~~~~~~-----~~~~~~~~~~~~~~~~  143 (218)
T 3ibs_A           80 ESISPSLISKQGTAIGEAINLATRSFT-----------PQEGVGRAIIVITDGENHEGG-----AVEAAKAAAEKGIQVS  143 (218)
T ss_dssp             HTCCGGGCCSCSCCHHHHHHHHHTTSC-----------SCSSCCEEEEEEECCTTCCSC-----HHHHHHHHHTTTEEEE
T ss_pred             HHHCCCCCCCCCCCHHHHHHHHHHHHH-----------HHCCCCCEEEEECCCCCCCCC-----HHHHHHHHHHCCCEEE
T ss_conf             752214566899637899999998741-----------202677679996589988761-----3899999987698799


Q ss_pred             EEEECCCC-------------------------CHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHHHHHE
Q ss_conf             99941864-------------------------279899833--8980898289899999999999964000
Q gi|254780833|r  321 AIGVQAEA-------------------------ADQFLKNCA--SPDRFYSVQNSRKLHDAFLRIGKEMVKQ  365 (371)
Q Consensus       321 tIg~~~~~-------------------------~~~~l~~cA--s~~~~y~~~~~~~L~~af~~I~~~i~~~  365 (371)
                      +++++.+.                         +...|+.+|  ++|.||++++.+++.++|.+.-+++.+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~iA~~tgG~y~~~~~~~~~~~~i~~~I~~l~~~  215 (218)
T 3ibs_A          144 VLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQEISKMAKS  215 (218)
T ss_dssp             EEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf             998626878621122677522146776243326999999999964918999528799999999999754243


No 6  
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A*
Probab=99.84  E-value=2.8e-19  Score=133.39  Aligned_cols=190  Identities=18%  Similarity=0.218  Sum_probs=144.2

Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC----CHHH
Q ss_conf             134674069985276311566787214898999998750023355553110479878863674178166655----8789
Q gi|254780833|r  164 KSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW----GVQH  239 (371)
Q Consensus       164 ~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~----~~~~  239 (371)
                      ....++|++|++|.|+||..      ++.+.+++++..+++.+...+   ...|++++.|++......+|+.    ++..
T Consensus       239 ~~~~~~Dl~f~lD~S~s~~~------~~f~~~k~f~~~lv~~~~~~~---~~~rv~vi~ys~~~~~~~~l~~~~~~~~~~  309 (741)
T 3hrz_D          239 DPSGSMNIYLVLDGSGSIGA------SDFTGAKKCLVNLIEKVASYG---VKPRYGLVTYATYPKIWVKVSEADSSNADW  309 (741)
T ss_dssp             CTTCEEEEEEEEECSTTTCH------HHHHHHHHHHHHHHHHHHHTT---CCCEEEEEEESSSEEEEECTTSGGGGCHHH
T ss_pred             CCCCCCEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCCCCC---CCCEEEEEEECCCCEEEEECCCCCCCCHHH
T ss_conf             56888138999965665487------789999999999998634688---874699999647715888516666789999


Q ss_pred             HHHHHHCCC-----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH----
Q ss_conf             999974015-----68874564237889999874211012346777666169999840458888889789999999----
Q gi|254780833|r  240 IQEKINRLI-----FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCN----  310 (371)
Q Consensus       240 ~~~~i~~l~-----~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~----  310 (371)
                      +...|+.+.     .+++|++..|+.++.+.+.....   .......+.+|++||+|||..+.+.........+.+    
T Consensus       310 ~~~~i~~i~~~~~~~~ggT~t~~Al~~~~~~~~~~~~---~~~~~~~~~~~vlillTDG~s~~g~~p~~~~~~~~~~~~~  386 (741)
T 3hrz_D          310 VTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDD---VPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYI  386 (741)
T ss_dssp             HHHHHTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC-----CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             9999971776667788875899999999986421101---5755567898599998998655788832444432212223


Q ss_pred             -----HHHHCCCEEEEEEECCCCCHHHHHHHCC-C---CEEEEECCHHHHHHHHHHHHHHHHHE
Q ss_conf             -----9997898799999418642798998338-9---80898289899999999999964000
Q gi|254780833|r  311 -----EAKRRGAIVYAIGVQAEAADQFLKNCAS-P---DRFYSVQNSRKLHDAFLRIGKEMVKQ  365 (371)
Q Consensus       311 -----~~k~~gi~i~tIg~~~~~~~~~l~~cAs-~---~~~y~~~~~~~L~~af~~I~~~i~~~  365 (371)
                           .++++||.||+||+|.+.+...|+.+|+ +   .|+|.+++.++|.+.+.+|.......
T Consensus       387 ~~~~~~~~~~gi~i~~igvg~~~~~~~L~~iAs~~~~~~~v~~~~d~~~L~~~~~~~~~~~~~~  450 (741)
T 3hrz_D          387 GKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSL  450 (741)
T ss_dssp             SSCTTCCCGGGEEEEEEECSSSCCHHHHHHHSCCCTTCCCEECBSSHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCCCCC
T ss_conf             4667778878939999986775899999999708888623999689999888874430023234


No 7  
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhesion, glycoprotein, toxin/cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.83  E-value=2.9e-19  Score=133.31  Aligned_cols=180  Identities=17%  Similarity=0.214  Sum_probs=137.4

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCC--CCHHHHHH
Q ss_conf             3467406998527631156678721489899999875002335555311047987886367417816665--58789999
Q gi|254780833|r  165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLA--WGVQHIQE  242 (371)
Q Consensus       165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt--~~~~~~~~  242 (371)
                      ++..+|++|++|.|+||..        .+..++.+..+++.+...   ...+|++++.|++.+....+|.  .+..++..
T Consensus         3 ~p~~~DivfvlD~S~S~~~--------~~~~k~f~~~~i~~~~i~---~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~   71 (200)
T 1v7p_C            3 SPSLIDVVVVCDESNSIYP--------WDAVKNFLEKFVQGLDIG---PTKTQVGLIQYANNPRVVFNLNTYKTKEEMIV   71 (200)
T ss_dssp             ---CEEEEEEEECCTTCCC--------HHHHHHHHHHHHHTSCBS---TTSEEEEEEEESSSEEEEECTTTCSSHHHHHH
T ss_pred             CCCCEEEEEEEECCCCCCC--------HHHHHHHHHHHHHHHCCC---CCCEEEEEEEECCCEEEEECCCCHHHHHHHHH
T ss_conf             9871669999979898867--------999999999999971558---87608999997595467406642115899999


Q ss_pred             HHHCCCC--CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             9740156--88745642378899998742110123467776661699998404588888897899999999997898799
Q gi|254780833|r  243 KINRLIF--GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVY  320 (371)
Q Consensus       243 ~i~~l~~--~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~  320 (371)
                      .|+.+..  +++|++..|+.++.+.++....      ...++.+|++||+|||.++++.    ........+|+.||++|
T Consensus        72 ~i~~i~~~~g~~t~~~~AL~~a~~~~f~~~~------~~r~~~~kvivllTDG~~~d~~----~~~~~~~~~~~~gi~i~  141 (200)
T 1v7p_C           72 ATSQTSQYGGDLTNTFGAIQYARKYAYSAAS------GGRRSATKVMVVVTDGESHDGS----MLKAVIDQCNHDNILRF  141 (200)
T ss_dssp             HHHHCCCCCCSCCCHHHHHHHHHHHTTSGGG------TCCTTSEEEEEEEESSCCSCGG----GHHHHHHHHHHTTEEEE
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC------CCCCCCCEEEEEEECCCCCCCC----CHHHHHHHHHCCCEEEE
T ss_conf             9876306799964289999999997337355------8888885559998279888861----13999998764890999


Q ss_pred             EEEECCCCC---------HHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHHE
Q ss_conf             999418642---------7989983389---80898289899999999999964000
Q gi|254780833|r  321 AIGVQAEAA---------DQFLKNCASP---DRFYSVQNSRKLHDAFLRIGKEMVKQ  365 (371)
Q Consensus       321 tIg~~~~~~---------~~~l~~cAs~---~~~y~~~~~~~L~~af~~I~~~i~~~  365 (371)
                      +||++...+         ...|+.+||.   .|+|.+++..+|.+.+++|.++|.+.
T Consensus       142 ~Igvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~d~~~L~~~~~~l~~~ic~i  198 (200)
T 1v7p_C          142 GIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIFSI  198 (200)
T ss_dssp             EEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf             999777445565443125999999866998613999389999999999999772056


No 8  
>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.83  E-value=2.5e-19  Score=133.75  Aligned_cols=180  Identities=17%  Similarity=0.282  Sum_probs=135.3

Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHH
Q ss_conf             134674069985276311566787214898999998750023355553110479878863674178166655--878999
Q gi|254780833|r  164 KSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQ  241 (371)
Q Consensus       164 ~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~  241 (371)
                      ++..++|++|++|.|+||..        .+..++++..+++.+...   ....|++++.|++.+....+|+.  +...+.
T Consensus         3 eC~~~~DivfvlD~S~S~~~--------f~~~k~f~~~~i~~~~~~---~~~~rv~vv~y~~~~~~~~~l~~~~~~~~~~   71 (213)
T 1pt6_A            3 ECSTQLDIVIVLDGSNSIYP--------WDSVTAFLNDLLKRMDIG---PKQTQVGIVQYGENVTHEFNLNKYSSTEEVL   71 (213)
T ss_dssp             ----CEEEEEEEECCTTCCC--------HHHHHHHHHHHHTTSCBS---TTSBEEEEEEESSSEEEEECTTTCSSHHHHH
T ss_pred             CCCCCEEEEEEEECCCCCCC--------HHHHHHHHHHHHHHHCCC---CCCCEEEEEEEEEEEEEEECCCCCCCHHHHH
T ss_conf             79984489999979888878--------899999999999972448---8773788999742368997765567799999


Q ss_pred             HHHHCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             99740156887--4564237889999874211012346777666169999840458888889789999999999789879
Q gi|254780833|r  242 EKINRLIFGST--TKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIV  319 (371)
Q Consensus       242 ~~i~~l~~~g~--T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i  319 (371)
                      ..++.+...++  |+...++.++...+.....      ...++.+|++||+|||..++.    .......+.+|+.||+|
T Consensus        72 ~~i~~~~~~~g~~t~~~~al~~a~~~~~~~~~------g~R~~~~k~villTDG~~~d~----~~~~~~~~~lk~~gi~v  141 (213)
T 1pt6_A           72 VAAKKIVQRGGRQTMTALGTDTARKEAFTEAR------GARRGVKKVMVIVTDGESHDN----HRLKKVIQDCEDENIQR  141 (213)
T ss_dssp             HHHHTCCCCCCSSCCHHHHHHHHHHTTTSGGG------TCCTTCEEEEEEEESSCCSCS----HHHHHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC------CCCCCCEEEEEEEECCCCCCC----HHHHHHHHHHHHCCCEE
T ss_conf             99877775078410021234344432013224------787786689999846987884----15999999999889999


Q ss_pred             EEEEECCCCCH---------HHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             99994186427---------989983389---8089828989999999999996400
Q gi|254780833|r  320 YAIGVQAEAAD---------QFLKNCASP---DRFYSVQNSRKLHDAFLRIGKEMVK  364 (371)
Q Consensus       320 ~tIg~~~~~~~---------~~l~~cAs~---~~~y~~~~~~~L~~af~~I~~~i~~  364 (371)
                      |+||++...+.         +.|+.+||.   .|+|.+++..+|.+.++.|.++|..
T Consensus       142 ~~Vgvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~~~~~L~~i~~~l~~~ic~  198 (213)
T 1pt6_A          142 FSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFA  198 (213)
T ss_dssp             EEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC
T ss_pred             EEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf             999974765545433324699999986699854089808999999999999999724


No 9  
>3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens}
Probab=99.81  E-value=1.5e-18  Score=129.07  Aligned_cols=170  Identities=15%  Similarity=0.193  Sum_probs=134.5

Q ss_pred             CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHHHHH
Q ss_conf             74069985276311566787214898999998750023355553110479878863674178166655--8789999974
Q gi|254780833|r  168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQEKIN  245 (371)
Q Consensus       168 ~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~~i~  245 (371)
                      .+|++|++|.|+||+.      ...+..++.+..+++.+...   ...+|++++.|++.+....+|..  +...+...|+
T Consensus         2 vlDivfllD~S~Sv~~------~~f~~~k~fi~~~i~~l~i~---~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~~~~i~   72 (184)
T 3gxb_A            2 VLDVAFVLEGSDKIGE------ADFNRSKEFMEEVIQRMDVG---QDSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRVR   72 (184)
T ss_dssp             CEEEEEEEECSTTTCH------HHHHHHHHHHHHHHHTSCBC---TTSEEEEEEEESSSEEEEECTTSCCCHHHHHHHHH
T ss_pred             CEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCCCC---CCCEEEEEEEECCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             1689999979899897------99999999999999963659---87349999885471789984687677799999863


Q ss_pred             CCCCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             01568--8745642378899998742110123467776661699998404588888897899999999997898799999
Q gi|254780833|r  246 RLIFG--STTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIG  323 (371)
Q Consensus       246 ~l~~~--g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg  323 (371)
                      .+...  +.|++..|++++.+.++...      ....++.+|++|++|||.+++.-..           +.+||+||+||
T Consensus        73 ~i~~~~g~~t~~~~AL~~~~~~~f~~~------~~~R~~~~kvivllTdG~s~d~~~~-----------~~~gi~i~~vg  135 (184)
T 3gxb_A           73 EIRYQGGNRTNTGLALRYLSDHSFLVS------QGDREQAPNLVYMVTGNPASDEIKR-----------LPGDIQVVPIG  135 (184)
T ss_dssp             TCCCCCCSCCCHHHHHHHHHHTGGGSC------CGGGGGSCEEEEEEECSCCSSCCCC-----------CCTTEEEEEEE
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHCCCC------CCCCCCCCEEEEEECCCCCCHHHHH-----------HHCCCEEEEEE
T ss_conf             001137765417999999999852634------4899999669999659997068999-----------84899899998


Q ss_pred             ECCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             4186427989983389808982898999999999999640
Q gi|254780833|r  324 VQAEAADQFLKNCASPDRFYSVQNSRKLHDAFLRIGKEMV  363 (371)
Q Consensus       324 ~~~~~~~~~l~~cAs~~~~y~~~~~~~L~~af~~I~~~i~  363 (371)
                      +|.+.+...|+.+|+++++|.+++.++|.+.+.+|..++.
T Consensus       136 vG~~~~~~~L~~ia~~~~~~~~~~~~~L~~~~~~l~~~~c  175 (184)
T 3gxb_A          136 VGPNANVQELERIGWPNAPILIQDFETLPREAPDLVLQRC  175 (184)
T ss_dssp             ESTTSCHHHHHHHHTTSCCEEESCTTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHC
T ss_conf             4674799999987399977994899999999999997546


No 10 
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.81  E-value=6e-19  Score=131.41  Aligned_cols=181  Identities=17%  Similarity=0.281  Sum_probs=136.6

Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHH
Q ss_conf             134674069985276311566787214898999998750023355553110479878863674178166655--878999
Q gi|254780833|r  164 KSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQ  241 (371)
Q Consensus       164 ~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~  241 (371)
                      .+..++|++|++|.|+||..        .+..++.+..+++.+...   ...+|++++.|++.+....+|+.  +...+.
T Consensus        18 ~c~~~~DivfvlD~S~sv~~--------~~~~k~fv~~li~~~~i~---~~~~rv~lv~fs~~~~~~~~l~~~~~~~~~~   86 (223)
T 2b2x_A           18 ECSTQLDIVIVLDGSNSIYP--------WESVIAFLNDLLKRMDIG---PKQTQVGIVQYGENVTHEFNLNKYSSTEEVL   86 (223)
T ss_dssp             ----CEEEEEEEECSTTCCC--------HHHHHHHHHHHHTTSCCS---TTSCCEEEEEESSSEEEEECTTTCCSHHHHH
T ss_pred             CCCCCEEEEEEEECCCCCCC--------HHHHHHHHHHHHHHCCCC---CCCCEEEEEEEECCEEEECCCCCCCCHHHHH
T ss_conf             89986569999979887436--------999999999999971558---8860898998604267860545557689999


Q ss_pred             HHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             9974015688--74564237889999874211012346777666169999840458888889789999999999789879
Q gi|254780833|r  242 EKINRLIFGS--TTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIV  319 (371)
Q Consensus       242 ~~i~~l~~~g--~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i  319 (371)
                      ..++.+...+  +|++..++.++.+.+.....      ...++..|++||+|||..++.    .........+|+.||+|
T Consensus        87 ~~i~~i~~~~~~~t~~~~aL~~~~~~~~~~~~------g~R~~~~kvlillTDG~~~d~----~~~~~~a~~lk~~gi~v  156 (223)
T 2b2x_A           87 VAANKIVQRGGRQTMTALGIDTARKEAFTEAR------GARRGVKKVMVIVTDGESHDN----YRLKQVIQDCEDENIQR  156 (223)
T ss_dssp             HHHTTCCCCCCSSCCHHHHHHHHHHTTSSGGG------TCCTTSEEEEEEEESSCCTTG----GGHHHHHHHHHTTTEEE
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC------CCCCCCCEEEEEEECCCCCCC----HHHHHHHHHHHHCCCEE
T ss_conf             99874312477332217778888887503335------888787257999826987883----12999999998759989


Q ss_pred             EEEEECCCCCH---------HHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHHE
Q ss_conf             99994186427---------989983389---80898289899999999999964000
Q gi|254780833|r  320 YAIGVQAEAAD---------QFLKNCASP---DRFYSVQNSRKLHDAFLRIGKEMVKQ  365 (371)
Q Consensus       320 ~tIg~~~~~~~---------~~l~~cAs~---~~~y~~~~~~~L~~af~~I~~~i~~~  365 (371)
                      |+||++.+.+.         ..|+.+||.   .|+|.+++..+|.+.+++|.++|...
T Consensus       157 ~~Igvg~~~~~~~~~~~~~~~eL~~IAs~p~~~~~f~~~d~~~L~~i~~~l~~~ic~~  214 (223)
T 2b2x_A          157 FSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERIFAL  214 (223)
T ss_dssp             EEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHHHHTTTC--
T ss_pred             EEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf             9999846666443244236999999866998551898189999999999999886431


No 11 
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 2adf_A 1fe8_A 1ao3_A
Probab=99.80  E-value=3e-18  Score=127.18  Aligned_cols=177  Identities=12%  Similarity=0.131  Sum_probs=134.4

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCC--CCHHHHHH
Q ss_conf             3467406998527631156678721489899999875002335555311047987886367417816665--58789999
Q gi|254780833|r  165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLA--WGVQHIQE  242 (371)
Q Consensus       165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt--~~~~~~~~  242 (371)
                      +..++|++|++|.|+||..      ..++..+.++..+++.+...   ....|++++.|++......++.  .+.+++..
T Consensus         2 C~~~~DivfllD~S~s~~~------~~~~~~k~fv~~~i~~~~i~---~~~~rv~vv~y~~~~~~~~~l~~~~~~~~~~~   72 (189)
T 1atz_A            2 CSQPLDVILLLDGSSSFPA------SYFDEMKSFAKAFISKANIG---PRLTQVSVLQYGSITTIDVPWNVVPEKAHLLS   72 (189)
T ss_dssp             --CCEEEEEEEECSSSSCH------HHHHHHHHHHHHHHHHSCBS---TTSEEEEEEEESSSEEEEECTTCCCCHHHHHH
T ss_pred             CCCCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCCCC---CCCCEEEEEEEEEEEEEEEEEECCCCHHHHHH
T ss_conf             7985789999948799886------89999999999999970758---88748999997501389998523675899999


Q ss_pred             HHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             974015-6887456423788999987421101234677766616999984045888888978999999999978987999
Q gi|254780833|r  243 KINRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYA  321 (371)
Q Consensus       243 ~i~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~t  321 (371)
                      .|+.+. .+|+|++..++.++.+.+.....      ...++..|++|++|||..++.      .....+.+|+.||+||+
T Consensus        73 ~i~~l~~~gg~t~~~~al~~a~~~~~~~~~------g~R~~a~k~vvlltdg~~~~~------~~~~~~~lk~~~i~v~~  140 (189)
T 1atz_A           73 LVDVMQREGGPSQIGDALGFAVRYLTSEMH------GARPGASKAVVILVTDVSVDS------VDAAADAARSNRVTVFP  140 (189)
T ss_dssp             HHHTCCCCCCCCCHHHHHHHHHHHHHSCCT------TCCTTSEEEEEEEECSCCSSC------CHHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHHC------CCCCCCEEEEEEEECCCCCCC------HHHHHHHHHHCCCEEEE
T ss_conf             999887437787632578999999740102------799988058999925998651------89999999988999999


Q ss_pred             EEECCCCCHHHHHHHCC---CCEEEEECCHHHHH---HHHHHHHHHH
Q ss_conf             99418642798998338---98089828989999---9999999964
Q gi|254780833|r  322 IGVQAEAADQFLKNCAS---PDRFYSVQNSRKLH---DAFLRIGKEM  362 (371)
Q Consensus       322 Ig~~~~~~~~~l~~cAs---~~~~y~~~~~~~L~---~af~~I~~~i  362 (371)
                      ||+|...+...|+.+|+   ..+.|.+.+.++|.   +..+.|.++|
T Consensus       141 igig~~~~~~~l~~ia~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~i  187 (189)
T 1atz_A          141 IGIGDRYDAAQLRILAGPAGDSNVVKLQRIEDLPTMVTLGNSFLHKL  187 (189)
T ss_dssp             EEESSSSCHHHHHHHTGGGGGGGCEEESSTTHHHHHHHSCSHHHHHC
T ss_pred             EEECCCCCHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf             99588699999999857888775899468766888999999998844


No 12 
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.79  E-value=1.3e-18  Score=129.40  Aligned_cols=180  Identities=19%  Similarity=0.276  Sum_probs=135.7

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHH
Q ss_conf             34674069985276311566787214898999998750023355553110479878863674178166655--8789999
Q gi|254780833|r  165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQE  242 (371)
Q Consensus       165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~  242 (371)
                      .+.+.|++|++|.|+||..      +.....++++..+++.+..     ...|++++.|...+....+|+.  +..++..
T Consensus         6 ~~~~~DivfvlD~S~Sm~~------~~~~~~k~~i~~li~~l~~-----~~~rv~vv~f~~~~~~~~~l~~~~~~~~~~~   74 (198)
T 1n3y_A            6 SRQEQDIVFLIDGSGSISS------RNFATMMNFVRAVISQFQR-----PSTQFSLMQFSNKFQTHFTFEEFRRSSNPLS   74 (198)
T ss_dssp             --CCEEEEEEEECCTTSCH------HHHHHHHHHHHHHHTTSCT-----TTEEEEEEEESSSEEEEECHHHHHHCSSGGG
T ss_pred             CCCCCCEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHCC-----CCCEEEEEEEECCEEEECCCCCCCCHHHHHH
T ss_conf             6888648999968799887------9999999999999997089-----9858999998343234126666433899999


Q ss_pred             HHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             974015-6887456423788999987421101234677766616999984045888888978999999999978987999
Q gi|254780833|r  243 KINRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYA  321 (371)
Q Consensus       243 ~i~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~t  321 (371)
                      .++.+. .+++|++..++.++.+.+....      ....+..+|++||+|||.+++.....   ...++.+|+.||+||+
T Consensus        75 ~i~~~~~~~~~t~~~~al~~a~~~~~~~~------~~~r~~~~kvivlltDG~~~~~~~~~---~~~~~~~~~~gv~i~~  145 (198)
T 1n3y_A           75 LLASVHQLQGFTYTATAIQNVVHRLFHAS------YGARRDAAKILIVITDGKKEGDSLDY---KDVIPMADAAGIIRYA  145 (198)
T ss_dssp             GGTTCCCCCSCBCHHHHHHHHHTTTTSGG------GTCCTTSEEEEEEEESSCCBSCSSCH---HHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHH------CCCCCCCCCEEEEEECCCCCCCCCCH---HHHHHHHHHCCCEEEE
T ss_conf             88765403698738899999999984232------05778764259999358988872059---9999999978988999


Q ss_pred             EEECCC----CCHHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             994186----427989983389---8089828989999999999996400
Q gi|254780833|r  322 IGVQAE----AADQFLKNCASP---DRFYSVQNSRKLHDAFLRIGKEMVK  364 (371)
Q Consensus       322 Ig~~~~----~~~~~l~~cAs~---~~~y~~~~~~~L~~af~~I~~~i~~  364 (371)
                      ||++..    .+...|+.+|+.   .++|.+++.++|.+.++.|.++|..
T Consensus       146 Ig~g~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~i~~~l~~~ic~  195 (198)
T 1n3y_A          146 IGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA  195 (198)
T ss_dssp             EEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGGGGGGHHHHHHHHHT
T ss_pred             EEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf             99787667753499999986699865199929999999999999987316


No 13 
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1
Probab=99.78  E-value=2.2e-18  Score=127.98  Aligned_cols=178  Identities=19%  Similarity=0.275  Sum_probs=134.3

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHHH
Q ss_conf             4674069985276311566787214898999998750023355553110479878863674178166655--87899999
Q gi|254780833|r  166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQEK  243 (371)
Q Consensus       166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~~  243 (371)
                      ..+.|++|++|.|+||...      ....+++.+..+++.+..     ..+|++++.|++.+....+|+.  +..++.+.
T Consensus         3 ~~~~DivfvlD~S~s~~~~------~f~~~k~~i~~~i~~l~~-----~~~rvgvv~f~~~~~~~~~l~~~~~~~~~~~~   71 (194)
T 1mf7_A            3 QEDSDIAFLIDGSGSIIPH------DFRRMKEFVSTVMEQLKK-----SKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSL   71 (194)
T ss_dssp             CCCEEEEEEEECCTTSCHH------HHHHHHHHHHHHHHHHCC-----TTEEEEEEEESSSEEEEECHHHHHHSCCHHHH
T ss_pred             CCCEEEEEEEECCCCCCHH------HHHHHHHHHHHHHHHCCC-----CCCEEEEEEEEEEEEEEECCCCCCCHHHHHHH
T ss_conf             9871799999598998879------999999999999997198-----88089999965403775114663668999987


Q ss_pred             HHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             74015-68874564237889999874211012346777666169999840458888889789999999999789879999
Q gi|254780833|r  244 INRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAI  322 (371)
Q Consensus       244 i~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tI  322 (371)
                      |+.+. .+|+|++..++.++.+.+....      ....++.+|++|++|||..+.......   .....+|..||+||+|
T Consensus        72 i~~l~~~~g~t~~~~al~~a~~~~~~~~------~~~~~~~~kvvvl~tDG~~~~~~~~~~---~~~~~l~~~gv~v~~V  142 (194)
T 1mf7_A           72 VKPITQLLGRTHTATGIRKVVRELFNIT------NGARKNAFKILVVITDGEKFGDPLGYE---DVIPEADREGVIRYVI  142 (194)
T ss_dssp             HTTCCCCCSCBCHHHHHHHHHHTTTSGG------GTCCTTSEEEEEEEESSCCBSCSSCGG---GTHHHHHHTTEEEEEE
T ss_pred             HHCCCCCCCCCHHHHHHHHHHHHHHHHH------CCCCCCCCEEEEEEECCCCCCCHHHHH---HHHHHHHHCCCEEEEE
T ss_conf             6413423698669999999999874143------267677664999994788789804499---9999999779999999


Q ss_pred             EECCCC----CHHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             941864----27989983389---808982898999999999999640
Q gi|254780833|r  323 GVQAEA----ADQFLKNCASP---DRFYSVQNSRKLHDAFLRIGKEMV  363 (371)
Q Consensus       323 g~~~~~----~~~~l~~cAs~---~~~y~~~~~~~L~~af~~I~~~i~  363 (371)
                      |++...    +...|+.+|+.   .|+|.+++.++|.+.++.|.++|.
T Consensus       143 gi~~~~~~~~~~~~L~~iAs~~~~~~~~~v~~~~~L~~~~~~l~~~i~  190 (194)
T 1mf7_A          143 GVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIF  190 (194)
T ss_dssp             EESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHH
T ss_pred             EECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHC
T ss_conf             978876663469999998669986608994999999999999987641


No 14 
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.77  E-value=7.4e-17  Score=118.79  Aligned_cols=182  Identities=13%  Similarity=0.215  Sum_probs=138.6

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHH
Q ss_conf             34674069985276311566787214898999998750023355553110479878863674178166655--8789999
Q gi|254780833|r  165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQE  242 (371)
Q Consensus       165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~  242 (371)
                      +..++|++||+|.||||+.      ++++.+++++..+++.+...+   ...+++++.|........++..  +...+..
T Consensus        10 C~~~~DlvfvlD~SgSm~~------~~~~~~k~~~~~li~~l~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (202)
T 1ijb_A           10 CSRLLDLVFLLDGSSRLSE------AEFEVLKAFVVDMMERLRVSQ---KWVRVAVVEYHDGSHAYIGLKDRKRPSELRR   80 (202)
T ss_dssp             BCSCEEEEEEEECBTTSCH------HHHHHHHHHHHHHHHTBCBST---TSEEEEEEEESSSEEEEECTTCCCCHHHHHH
T ss_pred             CCCCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCCCCC---CCCEEEEEEECCCEEEEEECCCCCCHHHHHH
T ss_conf             8987348999968899885------899999999999998666788---8736888774263268860675314999999


Q ss_pred             HHHCCCCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             97401568--8745642378899998742110123467776661699998404588888897899999999997898799
Q gi|254780833|r  243 KINRLIFG--STTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVY  320 (371)
Q Consensus       243 ~i~~l~~~--g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~  320 (371)
                      .++.+...  ++++...++.+....+..        ....+...|.+|+++||..+.....  .....+..+|+.||+||
T Consensus        81 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~a~~l~~~gi~i~  150 (202)
T 1ijb_A           81 IASQVKYAGSQVASTSEVLKYTLFQIFS--------KIDRPEASRIALLLMASQEPQRMSR--NFVRYVQGLKKKKVIVI  150 (202)
T ss_dssp             HHHTCCCCCBSCCCHHHHHHHHHHHTSS--------SCSCTTSEEEEEEEECCCCCGGGCT--THHHHHHHHHHTTEEEE
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHH--------HCCCCCCCEEEEEEEECCCCCCCCH--HHHHHHHHHHHCCCEEE
T ss_conf             9975540477520499999999975544--------2057765213589995368986324--49999999986798899


Q ss_pred             EEEECCCCCHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHHHHE
Q ss_conf             99941864279899833---8980898289899999999999964000
Q gi|254780833|r  321 AIGVQAEAADQFLKNCA---SPDRFYSVQNSRKLHDAFLRIGKEMVKQ  365 (371)
Q Consensus       321 tIg~~~~~~~~~l~~cA---s~~~~y~~~~~~~L~~af~~I~~~i~~~  365 (371)
                      +||+|.+.+...|+.+|   ++.++|.+++.++|.+.+++|.+.|...
T Consensus       151 ~igiG~~~~~~~l~~ia~~~~~~~~~~~~~~~~l~~~~~~i~~~iC~~  198 (202)
T 1ijb_A          151 PVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDL  198 (202)
T ss_dssp             EEEESTTSCHHHHHHHHHHCTTCCCEEESSGGGHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf             999678469999999973799761899489999999999999986288


No 15 
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.71  E-value=3.9e-16  Score=114.48  Aligned_cols=152  Identities=12%  Similarity=0.080  Sum_probs=119.1

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCC-EEECCCCCCHHHHHHHHHCCC
Q ss_conf             0699852763115667872148989999987500233555531104798788636741-781666558789999974015
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKI-VQTFPLAWGVQHIQEKINRLI  248 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~lt~~~~~~~~~i~~l~  248 (371)
                      .+++++|.|+||..... ..+|++.+++++..+++.+.....   ..+++++.|.... ....+++.+...+...++.+.
T Consensus         4 a~viviD~S~SM~~~D~-~p~Rl~~ak~a~~~li~~~~~~~~---~~~vg~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~   79 (192)
T 2x5n_A            4 ATMILIDNSEWMINGDY-IPTRFEAQKDTVHMIFNQKINDNP---ENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLP   79 (192)
T ss_dssp             EEEEEECCSGGGGCTTS-SSCHHHHHHHHHHHHHHHHHHHCT---TCEEEEEECCTTSCCEEEEEESCHHHHHHHHTTCC
T ss_pred             EEEEEEECCHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHCCC---CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf             99999989855437898-978999999999999998764597---77499986057643014788408999998740234


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             68874564237889999874211012346777666169999840458888889789999999999789879999941864
Q gi|254780833|r  249 FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEA  328 (371)
Q Consensus       249 ~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~~~  328 (371)
                      ++|+|++..|+..++..+...         ......+.|+++|||..+.   +......+++.+++.||+||+||||.+.
T Consensus        80 ~~G~T~l~~al~~A~~~l~~~---------~~~~~~~~iil~tdg~~~~---~~~~~~~~a~~~~~~~i~i~~Ig~G~~~  147 (192)
T 2x5n_A           80 VRGNAKFGDGIQIAQLALKHR---------ENKIQRQRIVAFVGSPIVE---DEKNLIRLAKRMKKNNVAIDIIHIGELQ  147 (192)
T ss_dssp             CCSCCCHHHHHHHHHHHHHTC---------SCTTSEEEEEEEECSCCSS---CHHHHHHHHHHHHHTTEEEEEEEESCC-
T ss_pred             CCCCCCCCHHHHHHHHHHHHH---------HHCCCCEEEEEEECCCCCC---CHHHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf             468765227999999999862---------1104650699996889753---0678999999851357507999971767


Q ss_pred             CHHHHHHHC
Q ss_conf             279899833
Q gi|254780833|r  329 ADQFLKNCA  337 (371)
Q Consensus       329 ~~~~l~~cA  337 (371)
                      +...|+.++
T Consensus       148 ~~~~l~~~~  156 (192)
T 2x5n_A          148 NESALQHFI  156 (192)
T ss_dssp             --CHHHHHH
T ss_pred             CHHHHHHHH
T ss_conf             879999999


No 16 
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.62  E-value=2e-14  Score=104.10  Aligned_cols=155  Identities=20%  Similarity=0.276  Sum_probs=112.2

Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC----CHHH
Q ss_conf             134674069985276311566787214898999998750023355553110479878863674178166655----8789
Q gi|254780833|r  164 KSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW----GVQH  239 (371)
Q Consensus       164 ~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~----~~~~  239 (371)
                      ....++|++|++|.|+||..      +.++.+++++..+++.+...+   ...+++.+.|........++..    +...
T Consensus        13 ~~~~~lDivfvlD~S~Sm~~------~~~~~~k~~v~~~i~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (178)
T 2xgg_A           13 MGTNQLDICFLIDSSGSIGI------QNFRLVKQFLHTFLMVLPIGP---EEVNNAVVTYSTDVHLQWDLQSPNAVDKQL   83 (178)
T ss_dssp             -CTTCEEEEEEEECCTTTCH------HHHHHHHHHHHHHHHHSCBST---TSEEEEEEEESSSEEEEECTTSGGGSCHHH
T ss_pred             CCCCCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHHCCC---CCEEEEEEECCCCEEEEEECCCCCCHHHHH
T ss_conf             89998769999958899884------899999999999999850357---613999874044303664024431042999


Q ss_pred             HHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf             999974015-6887456423788999987421101234677766616999984045888888978999999999978987
Q gi|254780833|r  240 IQEKINRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAI  318 (371)
Q Consensus       240 ~~~~i~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~  318 (371)
                      +...+..+. ..+.++...++.+..+.+....      ....++.+|++|+||||.++++    ......++.+|+.||+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~------~~~~~~~~~vviliTDG~~~~~----~~~~~~a~~lk~~gi~  153 (178)
T 2xgg_A           84 AAHAVLDMPYKKGSTNTSDGLKACKQILFTGS------RPGREHVPKLVIGMTDGESDSD----FRTVRAAKEIRELGGI  153 (178)
T ss_dssp             HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC------CTTCTTSCEEEEEEESSCCCHH----HHHSHHHHHHHHTTCE
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC------CCCCCCCCEEEEEEECCCCCCC----CCHHHHHHHHHHCCCE
T ss_conf             99999862302365507899999999875330------3786523013699843887887----3799999999978998


Q ss_pred             EEEEEECCCCCHHHHHHHC
Q ss_conf             9999941864279899833
Q gi|254780833|r  319 VYAIGVQAEAADQFLKNCA  337 (371)
Q Consensus       319 i~tIg~~~~~~~~~l~~cA  337 (371)
                      ||+||+|.....++|..-+
T Consensus       154 I~~iGiG~~~~~ell~~~~  172 (178)
T 2xgg_A          154 VTVLAVGHYVAAALVPRGS  172 (178)
T ss_dssp             EEEEECC------------
T ss_pred             EEEEEECCCCHHHCCCCCC
T ss_conf             9999978752442566664


No 17 
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.58  E-value=1e-14  Score=105.93  Aligned_cols=169  Identities=18%  Similarity=0.264  Sum_probs=124.6

Q ss_pred             CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHHHH
Q ss_conf             674069985276311566787214898999998750023355553110479878863674178166655--878999997
Q gi|254780833|r  167 IGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQEKI  244 (371)
Q Consensus       167 ~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~~i  244 (371)
                      .|+|++|++|.|+||..      ++++.+++++..+++.+..     ...++++..|........++..  +...+...+
T Consensus         1 g~~DivfllD~S~Sm~~------~~f~~~k~~~~~~i~~l~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i   69 (179)
T 1mjn_A            1 GNVDLVFLFDGSMSLQP------DEFQKILDFMKDVMKKCSN-----TSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALL   69 (179)
T ss_dssp             CCEEEEEEEECBTTCCH------HHHHHHHHHHHHHHHHTTT-----SSEEEEEEEESSSEEEEECHHHHHHHCCHHHHH
T ss_pred             CCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHCC-----CCCEEEEEEEEECCEECCCCCCCCCHHHHHHHH
T ss_conf             97699999968899987------9999999999999997375-----776699999860211113521204699999987


Q ss_pred             HCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             4015-688745642378899998742110123467776661699998404588888897899999999997898799999
Q gi|254780833|r  245 NRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIG  323 (371)
Q Consensus       245 ~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg  323 (371)
                      +.+. .+|+++...++.++...+.....      ...+..+|++||+|||+++.+...          ++..++.+++++
T Consensus        70 ~~~~~~~g~~~~~~al~~a~~~~~~~~~------~~r~~~~k~ivllTDG~~~~~~~~----------~~~~~~~~~~~~  133 (179)
T 1mjn_A           70 KHVKHMLLLTNTFGAINYVATEVFREEL------GARPDATKVLIIITDGEATDSGNI----------DAAKDIIRYIIG  133 (179)
T ss_dssp             TTCCCCCBCCCHHHHHHHHHHHTSSGGG------TCCTTSEEEEEEEESSCCSSCSCC----------GGGTTSEEEEEE
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHHHHHH------CCCCCCCEEEEEECCCCCCCCHHH----------HHHHCCEEEEEE
T ss_conf             5125578983278899999999854530------689987148999807998860689----------998298688999


Q ss_pred             ECCCC----CHHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             41864----27989983389---80898289899999999999964
Q gi|254780833|r  324 VQAEA----ADQFLKNCASP---DRFYSVQNSRKLHDAFLRIGKEM  362 (371)
Q Consensus       324 ~~~~~----~~~~l~~cAs~---~~~y~~~~~~~L~~af~~I~~~i  362 (371)
                      ++...    +...|+.+|+.   .|+|.+++.++|.+.+++|.++|
T Consensus       134 i~~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~~~~~l~~~I  179 (179)
T 1mjn_A          134 IGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLCTELQKKI  179 (179)
T ss_dssp             ESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGGSCCHHHHHHHHC
T ss_pred             EEECCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf             9946886017999999857998633998799999999999997249


No 18 
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.55  E-value=1.2e-16  Score=117.47  Aligned_cols=170  Identities=16%  Similarity=0.174  Sum_probs=116.9

Q ss_pred             CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEE-ECCCCCCHHHHHHHHH
Q ss_conf             674069985276311566787214898999998750023355553110479878863674178-1666558789999974
Q gi|254780833|r  167 IGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQ-TFPLAWGVQHIQEKIN  245 (371)
Q Consensus       167 ~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~lt~~~~~~~~~i~  245 (371)
                      .+-+++||+|.||||..      ++++.+++++..++.......     .+.+++.|...... ..+++.+....+..++
T Consensus         4 ~~~~iv~vlD~SGSM~~------~~~~~~k~~~~~~l~~~~~~~-----d~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~   72 (189)
T 2x31_A            4 SDRVLIFAVDASGSAAV------ARLSEAKGAVELLLGRAYAAR-----DHVSLITFRGTAAQVLLQPSRSLTQTKRQLQ   72 (189)
T ss_dssp             SCCEEEEEEECCTTSCC--------CHHHHHHHHHHHHHSCTTT-----SCCCEEEESBSCCCBCTTTCSCHHHHHHHHH
T ss_pred             CCCEEEEEEEECCCCCC------HHHHHHHHHHHHHHHHHCCCC-----CEEEEEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf             77469999981757892------699999999999999725689-----6799999993243135887468999999985


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHH-------HHHHHHHCCCE
Q ss_conf             01568874564237889999874211012346777666169999840458888889789999-------99999978987
Q gi|254780833|r  246 RLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLF-------YCNEAKRRGAI  318 (371)
Q Consensus       246 ~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~-------~c~~~k~~gi~  318 (371)
                      .+.++|+|+...++..++..+...         ..+...++|||+|||.++.+.........       .+...+..||.
T Consensus        73 ~~~~~GgT~~~~al~~a~~~~~~~---------~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  143 (189)
T 2x31_A           73 GLPGGGGTPLASGMEMAMVTAKQA---------RSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMP  143 (189)
T ss_dssp             HCCCCBCCCCHHHHHHHHHHHHTC---------TTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSC
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHHH---------CCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             344579861789999999999972---------24588777999647987768786045899999999999998726983


Q ss_pred             EEEEEECCCCCHHHHHHHC--CCCEEEEECCH--HHHHHHHHH
Q ss_conf             9999941864279899833--89808982898--999999999
Q gi|254780833|r  319 VYAIGVQAEAADQFLKNCA--SPDRFYSVQNS--RKLHDAFLR  357 (371)
Q Consensus       319 i~tIg~~~~~~~~~l~~cA--s~~~~y~~~~~--~~L~~af~~  357 (371)
                      +++|+++... ...|+++|  ++|.||.+++.  ++|.+++..
T Consensus       144 ~~~i~~g~~~-~~~l~~iA~~~gG~y~~~~~~~~~~l~~~~~~  185 (189)
T 2x31_A          144 AVIIDTAMRP-NPALVDLARTMDAHYIALPRATAHKMADVLGA  185 (189)
T ss_dssp             CTHHHHHHSS-CSSSCSTTTEEEESSTTTHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCC-HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
T ss_conf             7998479787-69999999761999997599999999999999


No 19 
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=99.47  E-value=4.7e-12  Score=89.82  Aligned_cols=163  Identities=11%  Similarity=0.126  Sum_probs=107.6

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEE-ECCCCCCHHHHHHHH
Q ss_conf             4674069985276311566787214898999998750023355553110479878863674178-166655878999997
Q gi|254780833|r  166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQ-TFPLAWGVQHIQEKI  244 (371)
Q Consensus       166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~lt~~~~~~~~~i  244 (371)
                      +.|+|++|++|.||||..       +++.+++.+..+++.+...   ....|++++.|.+.... ..+++.+...++.++
T Consensus         1 ~~pvDl~fviD~SgSM~~-------~i~~~k~~~~~l~~~l~~~---~~~~r~g~v~f~d~~~~~~~~~t~~~~~~~~~i   70 (212)
T 2iue_A            1 DNSVDLYFLMGLSGSAQG-------HLSNVQTLGSDLLKALNEI---SRSGRIGFGSIVNMTFQHILKLTADSSQFQREL   70 (212)
T ss_dssp             CCCEEEEEEEECCGGGTT-------THHHHHHHHHHHHHHHHHH---CSCEEEEEEEESSSCEEEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEEEEECCCCHHH-------HHHHHHHHHHHHHHHHHHC---CCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             984689999988805267-------9999999999999999726---987089999705643433465576399999998


Q ss_pred             HCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC-----------------------
Q ss_conf             401568874564237889999874211012346777666169999840458888889-----------------------
Q gi|254780833|r  245 NRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID-----------------------  301 (371)
Q Consensus       245 ~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~-----------------------  301 (371)
                      +.+.+.|++...+++..|..........     ...+...|+|||+|||.++.....                       
T Consensus        71 ~~~~~~gg~d~~e~~~~al~~a~~~~~~-----~~~~~~~~~ivl~tD~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  145 (212)
T 2iue_A           71 RKQLVSGKLATPKGQLDAVVQVAICLGE-----IGWRNGTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSR  145 (212)
T ss_dssp             HTCCCCCCSSSSBCHHHHHHHHHHCHHH-----HTCCSSEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSSBBGGG
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHHH-----CCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCC
T ss_conf             6302148988850699999999987664-----37777735999996898655663024445311587157525653567


Q ss_pred             ----HHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHC--CCCEEEEE
Q ss_conf             ----789999999999789879999941864279899833--89808982
Q gi|254780833|r  302 ----NKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCA--SPDRFYSV  345 (371)
Q Consensus       302 ----~~~~~~~c~~~k~~gi~i~tIg~~~~~~~~~l~~cA--s~~~~y~~  345 (371)
                          .......+..+++++|.++....  ....+.++..+  .+|.++..
T Consensus       146 ~~~d~~~~~~~~~~~~~~~i~~i~~~~--~~~~~~~~~l~~~~~g~~v~~  193 (212)
T 2iue_A          146 GEPDYQSVVQLASKLAENNIQPIFVVP--SRMVKTYEKLTTFIPKLTIGE  193 (212)
T ss_dssp             GSSCCCCHHHHHHHHHHHTCEEEEEEE--HHHHHHHHHHHHHSTTCEEEE
T ss_pred             CCCCCCCHHHHHHHHHHCCCEEEEEEC--CCHHHHHHHHHHHCCCCCHHH
T ss_conf             776777799999999863975899974--532789999999738741266


No 20 
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.41  E-value=5.1e-13  Score=95.61  Aligned_cols=180  Identities=20%  Similarity=0.299  Sum_probs=126.6

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCC--HHHHHHH
Q ss_conf             46740699852763115667872148989999987500233555531104798788636741781666558--7899999
Q gi|254780833|r  166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWG--VQHIQEK  243 (371)
Q Consensus       166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~--~~~~~~~  243 (371)
                      +..+|++|++|.|+|+...      ....+++.+...+..++..     ..+++++.|+........|...  .......
T Consensus       128 ~~~~DivfvlDgS~Si~~~------df~~~k~f~~~v~~~f~~~-----~~qvg~vqys~~~~~~f~l~d~~~~~~~~~~  196 (1095)
T 3k6s_A          128 RQEQDIVFLIDGSGSISSR------NFATMMNFVRAVISQFQRP-----STQFSLMQFSNKFQTHFTFEEFRRSSNPLSL  196 (1095)
T ss_dssp             CCCEEEEEEEECCTTSCSH------HHHHHHHHHHHHHHSSCSS-----SEEEEEEEESSSEEEEECSHHHHSCSCGGGG
T ss_pred             CCCCCEEEEEECCCCCCCC------CHHHHHHHHHHHHHHCCCC-----CEEEEEEEECCCEEEEEEHHHCCCCCCHHHH
T ss_conf             6674379999089872743------0689999999998624667-----5499999613732588870343333026787


Q ss_pred             HHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             74015-68874564237889999874211012346777666169999840458888889789999999999789879999
Q gi|254780833|r  244 INRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAI  322 (371)
Q Consensus       244 i~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tI  322 (371)
                      ++.+. .+|.|++..|+......++..      .....++..|+||++|||+-+............   ++..||.+|+|
T Consensus       197 v~~i~~~~g~T~Ta~ai~~~~~~~f~~------~~g~r~~a~kv~IviTDG~s~~d~~~l~~~i~~---~~~~gI~~~aI  267 (1095)
T 3k6s_A          197 LASVHQLQGFTYTATAIQNVVHRLFHA------SYGARRDAAKILIVITDGKKEGDSLDYKDVIPM---ADAAGIIRYAI  267 (1095)
T ss_dssp             TTTCCCCCSCBCHHHHHHHHHTTTTST------TTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHH---HHHHCEEECCE
T ss_pred             HHHEEECCCCCCHHHHHHHHHHHHHHH------HHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH---HHHCCCEEEEE
T ss_conf             541461367430788899999976316------426888984179999268645673203444445---86489289999


Q ss_pred             EECCC----CCHHHHHHHCC-C--CEEEEECCHHHHHHHHHHHHHHHHHE
Q ss_conf             94186----42798998338-9--80898289899999999999964000
Q gi|254780833|r  323 GVQAE----AADQFLKNCAS-P--DRFYSVQNSRKLHDAFLRIGKEMVKQ  365 (371)
Q Consensus       323 g~~~~----~~~~~l~~cAs-~--~~~y~~~~~~~L~~af~~I~~~i~~~  365 (371)
                      |++..    .....|+.+|+ |  .|+|.+++...|.+....+.++|...
T Consensus       268 Gvg~~~~~~~~~~eL~~iAs~p~~~~~f~v~~~~aL~~i~~~L~~~i~~i  317 (1095)
T 3k6s_A          268 GVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFAI  317 (1095)
T ss_dssp             EBSSGGGSTTSSHHHHTTSCSSTTTSCCCBSCSGGGGSSTTTHHHHHHTC
T ss_pred             ECCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCEEE
T ss_conf             72543256433535421205887403899355577667777641652564


No 21 
>2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing, platelet integrin ALPHAIIBBETA3, polymorphism, glycoprotein, cell adhesion, calcium; HET: NAG MAN; 2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=99.11  E-value=2e-08  Score=67.90  Aligned_cols=193  Identities=13%  Similarity=0.155  Sum_probs=113.8

Q ss_pred             EEECCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCC----------
Q ss_conf             2210001346740699852763115667872148989999987500233555531104798788636741----------
Q gi|254780833|r  158 SVKISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKI----------  227 (371)
Q Consensus       158 ~~~~~~~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~----------  227 (371)
                      ..........|+|++|++|.|+||..       .++.+++....+.+.+...   ....|+|+..|.+..          
T Consensus       101 ~~~v~~~~~yPvDL~fLmD~TgSM~d-------dI~~lk~~~~~l~~~l~~~---t~~~rlGfgsf~Dk~~~p~~~~~~~  170 (461)
T 2vdr_B          101 SIQVRQVEDYPVDIYYLMDLSYSMKD-------DLWSIQNLGTKLATQMRKL---TSNLRIGFGAFVDKPVSPYMYISPP  170 (461)
T ss_dssp             EEEEECCSCCCEEEEEEEECSGGGGG-------GHHHHHHHHHHHHHHHHHH---CTTEEEEEEEECCCSSTTTSCCCST
T ss_pred             EEEEECCCCCCCCEEEEEECCCCHHH-------HHHHHHHHHHHHHHHHHHH---CCCCEEEEEEEEEECCCCCCCCCCH
T ss_conf             99875167787447999947746699-------9999999999999999852---8884799999897347764444666


Q ss_pred             --------------------EEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH-HHHCCCCCCCCCCCCCEE
Q ss_conf             --------------------78166655878999997401568874564237889999874-211012346777666169
Q gi|254780833|r  228 --------------------VQTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFD-AKEKLEHIAKGHDDYKKY  286 (371)
Q Consensus       228 --------------------~~~~~lt~~~~~~~~~i~~l~~~g~T~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~k~  286 (371)
                                          ....|||.+...+...++.+.+.||-...++..-|..+..- .+.-.|     +++.+|+
T Consensus       171 ~~l~~Pc~~~~~~c~~~f~~~~~l~lT~d~~~F~~~V~~~~~sGggD~PE~~~dAL~qa~vc~~~igW-----R~~a~ri  245 (461)
T 2vdr_B          171 EALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGW-----RNDASHL  245 (461)
T ss_dssp             HHHHCTTGGGTSCCCCCCSEEEEEEEESCHHHHHHHHHTCCCCCCSBSSBCHHHHHHHHHHCHHHHTC-----CTTSEEE
T ss_pred             HHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCEECCCCCCCCCCHHHHHHHHHHHHHHCCC-----CCCCEEE
T ss_conf             55048664678776787330452468878999999875036547986776689999999986310787-----8687599


Q ss_pred             EEEEECCCCC--------------CC--------------CCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHC
Q ss_conf             9998404588--------------88--------------88978999999999978987-9999941864279899833
Q gi|254780833|r  287 IIFLTDGENS--------------SP--------------NIDNKESLFYCNEAKRRGAI-VYAIGVQAEAADQFLKNCA  337 (371)
Q Consensus       287 ivl~TDG~~~--------------~~--------------~~~~~~~~~~c~~~k~~gi~-i~tIg~~~~~~~~~l~~cA  337 (371)
                      +||+||...+              ++              ..+.+...++.+.+++++|. ||+|.-..-.-.+.|...-
T Consensus       246 lvliTDA~~H~agDgkl~giv~pnDg~Chl~~~~~y~~s~~~DYPSv~ql~~~l~e~~i~pIFAVt~~~~~~Y~~L~~~i  325 (461)
T 2vdr_B          246 LVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELI  325 (461)
T ss_dssp             EEEEESSCBCCTTGGGGGTCCSCCCCCCCCCTTSBCTTTTTSCCCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHTTS
T ss_pred             EEEECCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHC
T ss_conf             99989788433687544104438876315379887665555778999999999986496799996553222689999746


Q ss_pred             CCCEEEE-ECCHHHHHHHHHHHHHHHHHE
Q ss_conf             8980898-289899999999999964000
Q gi|254780833|r  338 SPDRFYS-VQNSRKLHDAFLRIGKEMVKQ  365 (371)
Q Consensus       338 s~~~~y~-~~~~~~L~~af~~I~~~i~~~  365 (371)
                      .++..-. .++...+.+..++--++|.+.
T Consensus       326 ~~s~vg~L~~dSsNiv~LI~~aY~~i~s~  354 (461)
T 2vdr_B          326 PGTTVGVLSMDSSNVLQLIVDAYGKIRSK  354 (461)
T ss_dssp             TTCEEEEESSCCHHHHHHHHHHHHTCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHCE
T ss_conf             87536774477376999999999876307


No 22 
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, alternative splicing, cell adhesion, disease mutation, glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=99.06  E-value=1.6e-08  Score=68.49  Aligned_cols=192  Identities=16%  Similarity=0.191  Sum_probs=114.2

Q ss_pred             EEECCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCC----------
Q ss_conf             2210001346740699852763115667872148989999987500233555531104798788636741----------
Q gi|254780833|r  158 SVKISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKI----------  227 (371)
Q Consensus       158 ~~~~~~~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~----------  227 (371)
                      ........+.|+|+++++|.|+||..       .++.++.....+.+.+...   ....|+|+-+|-+++          
T Consensus       101 ~~~~~~~~~~pvdly~lmD~s~sm~d-------d~~~l~~l~~~l~~~~~~~---t~~~~~gfgsfvdk~~~p~~~~~~~  170 (690)
T 3fcs_B          101 SIQVRQVEDYPVDIYYLMDLSYSMKD-------DLWSIQNLGTKLATQMRKL---TSNLRIGFGAFVDKPVSPYMYISPP  170 (690)
T ss_dssp             EEEEECCBTCCEEEEEEEECSGGGHH-------HHHHTTTTTHHHHHHHHHH---CSCEEEEEEEECCCSSTTTSCCCST
T ss_pred             EEEEECCCCCCCCEEEEEECCCCHHH-------HHHHHHHHHHHHHHHHHHH---CCCCEEEEEEECCCCCCCCCCCCCH
T ss_conf             89873378898437999836752788-------9999999999999999862---8673687777204656775667676


Q ss_pred             --------------------EEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf             --------------------781666558789999974015688745642378899998742110123467776661699
Q gi|254780833|r  228 --------------------VQTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYI  287 (371)
Q Consensus       228 --------------------~~~~~lt~~~~~~~~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~i  287 (371)
                                          .-..|||.+.......|+....+|+-...+|---|..+..-   =.... ..+++.+|+|
T Consensus       171 ~~~~~pc~~~~~~c~~~~~~~~~~~lt~~~~~f~~~v~~~~~s~n~d~pe~~~dal~q~~v---c~~~i-gwr~~~~~~~  246 (690)
T 3fcs_B          171 EALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATV---CDEKI-GWRNDASHLL  246 (690)
T ss_dssp             TTTTCTTSSSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHH---CHHHH-TCCSSSEEEE
T ss_pred             HHCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHH---CCCCC-CCCCCCEEEE
T ss_conf             5404877577887678833046545666789999987525511687787504667877652---31223-5678976999


Q ss_pred             EEEECCCCC--------------CC--------------CCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHCC
Q ss_conf             998404588--------------88--------------88978999999999978987-99999418642798998338
Q gi|254780833|r  288 IFLTDGENS--------------SP--------------NIDNKESLFYCNEAKRRGAI-VYAIGVQAEAADQFLKNCAS  338 (371)
Q Consensus       288 vl~TDG~~~--------------~~--------------~~~~~~~~~~c~~~k~~gi~-i~tIg~~~~~~~~~l~~cAs  338 (371)
                      ||.||+..+              ++              ..+.+...++...+++++|. ||+|.-......+.|...-.
T Consensus       247 v~~tD~~~H~agDg~l~gi~~pnd~~chl~~~~~y~~~~~~dyPs~~q~~~~l~~~~i~~ifavt~~~~~~y~~l~~~~~  326 (690)
T 3fcs_B          247 VFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIP  326 (690)
T ss_dssp             EEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHHHST
T ss_pred             EEEECCCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCC
T ss_conf             99806731125665423563167761140798852556767789999999999872967999976654006899997548


Q ss_pred             CCEEEEE-CCHH----HHHHHHHHHHHHHH
Q ss_conf             9808982-8989----99999999999640
Q gi|254780833|r  339 PDRFYSV-QNSR----KLHDAFLRIGKEMV  363 (371)
Q Consensus       339 ~~~~y~~-~~~~----~L~~af~~I~~~i~  363 (371)
                      ++..... .+..    =|.++|++|..++.
T Consensus       327 ~~~~~~l~~dssnv~~li~~~y~~~~s~v~  356 (690)
T 3fcs_B          327 GTTVGVLSMDSSNVLQLIVDAYGKIRSKVE  356 (690)
T ss_dssp             TCEEEEECTTCTTHHHHHHHHHHHHTTCEE
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHHHHCEEE
T ss_conf             752687057861599999999987526467


No 23 
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=98.85  E-value=1.1e-07  Score=63.44  Aligned_cols=137  Identities=14%  Similarity=0.116  Sum_probs=84.7

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCC---HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCC--HHHH
Q ss_conf             46740699852763115667872---148989999987500233555531104798788636741781666558--7899
Q gi|254780833|r  166 DIGLDMMMVLDVSLSMNDHFGPG---MDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWG--VQHI  240 (371)
Q Consensus       166 ~~~idi~~viD~SgSm~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~--~~~~  240 (371)
                      ..+-.+++++|.||||......+   ....+.+.-.  .+.- ...      ..+.+++.|++.... +|++.+  ..+.
T Consensus       360 ~~~~r~lv~iDvSGSM~~~~~~~~~~~~~~~~a~ll--a~~~-~r~------~~~~~vv~Fs~~~~~-v~l~~~~sl~~~  429 (535)
T 2nvo_A          360 PANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAM--SLIA-LRT------EPDALTMGFAEQFRP-LGITPRDTLESA  429 (535)
T ss_dssp             CCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHH--HHHH-HHH------SSEEEEEEEBSSEEE-CCCCTTCCHHHH
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH--HHHH-HCC------CCCEEEEEECCCEEE-ECCCCCCCHHHH
T ss_conf             889737999976555666423787537799999999--9998-075------898079842796587-178888649999


Q ss_pred             HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             99974015688745642378899998742110123467776661699998404588888897899999999997898799
Q gi|254780833|r  241 QEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVY  320 (371)
Q Consensus       241 ~~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~  320 (371)
                      ...+..+ .+|+|++..++.|+.+.               ....+.+|++|||+.+.+...+...........+.+.+++
T Consensus       430 ~~~~~~~-~~ggT~~~~~l~~a~~~---------------~~~~D~iIllTD~e~~~g~~~p~~al~~yr~~~~~~~klv  493 (535)
T 2nvo_A          430 MQKAQSV-SFGGTDCAQPILWAAQE---------------RLDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLI  493 (535)
T ss_dssp             HHHTCCS-SBCCCCTTHHHHHHHHT---------------TCCCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCCEEE
T ss_pred             HHHHHHC-CCCCCHHHHHHHHHHHC---------------CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf             9998615-78996699999999856---------------5458989998089977899999999999999718997189


Q ss_pred             EEEECCCC
Q ss_conf             99941864
Q gi|254780833|r  321 AIGVQAEA  328 (371)
Q Consensus       321 tIg~~~~~  328 (371)
                      +|++....
T Consensus       494 ~v~l~~~~  501 (535)
T 2nvo_A          494 VVGLTATE  501 (535)
T ss_dssp             EEETTCSC
T ss_pred             EEEECCCC
T ss_conf             99803788


No 24 
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=98.71  E-value=1.7e-08  Score=68.37  Aligned_cols=191  Identities=15%  Similarity=0.202  Sum_probs=108.7

Q ss_pred             EEECCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC-----------
Q ss_conf             221000134674069985276311566787214898999998750023355553110479878863674-----------
Q gi|254780833|r  158 SVKISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK-----------  226 (371)
Q Consensus       158 ~~~~~~~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-----------  226 (371)
                      ........+.|+|+++++|.|+||..       .++.++.....+.+.+...   ....|+|+-+|.++           
T Consensus        94 ~~~~~~~~~~pvdly~lmd~s~sm~~-------d~~~~~~~~~~l~~~~~~~---t~~~~~g~g~fvdk~~~p~~~~~p~  163 (687)
T 3k6s_B           94 NVTFRRAKGYPIDLYYLMDLSYSMLD-------DLRNVKKLGGDLLRALNEI---TESGRIGFGSFVDKTVLPFVNTHPD  163 (687)
T ss_dssp             EEEECCCCCCCCEEEEEEECSSTTHH-------HHHTTTTCCTTHHHHHHSS---CCSCEEEEEEECCCSSTTSSCCSST
T ss_pred             EEEEECCCCCCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHHHHHHH---CCCCEEECCCCCCCCCCCCCCCCHH
T ss_conf             88875278898208999836741788-------9999999999999999863---8562760010123565875678877


Q ss_pred             ------------------CEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf             ------------------17816665587899999740156887456423788999987421101234677766616999
Q gi|254780833|r  227 ------------------IVQTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYII  288 (371)
Q Consensus       227 ------------------~~~~~~lt~~~~~~~~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~iv  288 (371)
                                        ..-+++||.+.......++....+|+-...+|---|..+..   .=....++-  +.+++||
T Consensus       164 ~~~~pc~~~~~~c~~~~~~~~~~~lt~~~~~f~~~~~~~~~~~n~d~pe~~~da~~q~~---~c~~~igwr--~~~~~~~  238 (687)
T 3k6s_B          164 KLRNPCPNKEKECQPPFAFRHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVA---ACPEEIGWR--NVTRLLV  238 (687)
T ss_dssp             TTTCCCCSCCCCCCCCCSCEEEEEEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHT---TCHHHHCCC--SSCCEEE
T ss_pred             HHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHEEEECCCCCCCCHHHHHHHHH---HCCCCCCCC--CCEEEEE
T ss_conf             70288878887767883415422566778999998751670357768650166888877---502223645--7548999


Q ss_pred             EEECCCCCC--------------C-------------CCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHCCCC
Q ss_conf             984045888--------------8-------------88978999999999978987-9999941864279899833898
Q gi|254780833|r  289 FLTDGENSS--------------P-------------NIDNKESLFYCNEAKRRGAI-VYAIGVQAEAADQFLKNCASPD  340 (371)
Q Consensus       289 l~TDG~~~~--------------~-------------~~~~~~~~~~c~~~k~~gi~-i~tIg~~~~~~~~~l~~cAs~~  340 (371)
                      |.||...+.              +             ..+.+...++-.++++++|. ||+|.=..-.-...|...-.++
T Consensus       239 ~~td~~~h~agdg~l~gi~~pnd~~chl~~~~y~~~~~~dyps~~~~~~~~~~~~i~~ifavt~~~~~~y~~l~~~~~~~  318 (687)
T 3k6s_B          239 FATDDGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLTEIIPKS  318 (687)
T ss_dssp             EECSSCCCCTTGGGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEEECGGGHHHHHHHHHHSSSC
T ss_pred             EECCCCCCCCCCCCCCEECCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCC
T ss_conf             98168744267642310404788731704883035666677898999999986492599997664443689999755775


Q ss_pred             EEEEE----CCHH-HHHHHHHHHHHHHH
Q ss_conf             08982----8989-99999999999640
Q gi|254780833|r  341 RFYSV----QNSR-KLHDAFLRIGKEMV  363 (371)
Q Consensus       341 ~~y~~----~~~~-~L~~af~~I~~~i~  363 (371)
                      ..-..    .|.- =+.++|++|..++.
T Consensus       319 ~~~~l~~ds~ni~~li~~~y~~i~s~v~  346 (687)
T 3k6s_B          319 AVGELSEDSSNVVQLIKNAYNKLSSRVF  346 (687)
T ss_dssp             CEEECCTTCCSCGGGTTTHHHHHSSCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHCEEE
T ss_conf             0476146647799999999986513799


No 25 
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=98.69  E-value=7.9e-07  Score=58.26  Aligned_cols=146  Identities=14%  Similarity=0.088  Sum_probs=97.7

Q ss_pred             CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC--------------CEEECCCCC
Q ss_conf             069985276311566787214898999998750023355553110479878863674--------------178166655
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK--------------IVQTFPLAW  235 (371)
Q Consensus       170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~--------------~~~~~~lt~  235 (371)
                      .+++++|.|+||.....+..++++.+++++..++...-..   ....++|++.|+..              .....|+..
T Consensus         9 aiv~~iDvs~sM~~~~~~~~s~~~~a~~~~~~~~~~ki~~---~~~D~vglvlfgt~~t~N~l~~~~~~~~i~v~~~l~~   85 (565)
T 1jey_B            9 AVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFA---ENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLML   85 (565)
T ss_dssp             EEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHT---TCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEEC
T ss_pred             EEEEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC---CCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf             1999998986776768899997999999999999987338---9998799999805788875554457775599745889


Q ss_pred             -CHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             -878999997401568-874564237889999874211012346777666169999840458888889789999999999
Q gi|254780833|r  236 -GVQHIQEKINRLIFG-STTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAK  313 (371)
Q Consensus       236 -~~~~~~~~i~~l~~~-g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k  313 (371)
                       +...++...+.+.++ +.++...++.++..+|....       ...+..++.|||+|||.+..+.   .....+.+.++
T Consensus        86 ~~~~~l~~l~~~~~~~~~~~d~~~aL~va~~~l~~~~-------~~~k~~~~~Ivl~Td~~~p~~~---~~~~~i~~~l~  155 (565)
T 1jey_B           86 PDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHET-------IGKKFEKRHIEIFTDLSSRFSK---SQLDIIIHSLK  155 (565)
T ss_dssp             CCHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHS-------SSSCCSEEEEEEECCCCSCCCC---TTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH-------HCCCCCCEEEEEEECCCCCCCH---HHHHHHHHHHH
T ss_conf             9999999998653688778787999999999999875-------0255562489999279988687---89999999998


Q ss_pred             HCCCEEEEEEECCCC
Q ss_conf             789879999941864
Q gi|254780833|r  314 RRGAIVYAIGVQAEA  328 (371)
Q Consensus       314 ~~gi~i~tIg~~~~~  328 (371)
                      +.||.+..|++....
T Consensus       156 ~~~i~L~vi~~~~~~  170 (565)
T 1jey_B          156 KCDISLQFFLPFSLG  170 (565)
T ss_dssp             HTTEEEEEEESSCCC
T ss_pred             HCCCEEEEEECCCCC
T ss_conf             659669997036665


No 26 
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=98.50  E-value=8.4e-06  Score=52.05  Aligned_cols=137  Identities=19%  Similarity=0.229  Sum_probs=81.4

Q ss_pred             CCCCCEEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCC--HHHHHH
Q ss_conf             467406998527631156678-72148989999987500233555531104798788636741781666558--789999
Q gi|254780833|r  166 DIGLDMMMVLDVSLSMNDHFG-PGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWG--VQHIQE  242 (371)
Q Consensus       166 ~~~idi~~viD~SgSm~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~--~~~~~~  242 (371)
                      ..+..+++.+|.||||..... ......+.+.-....+.. ....        ..++.|++... .++++..  ......
T Consensus       366 ~~~~r~liavDvSGSM~~~~~g~~~~~~~~aa~la~~~~~-~~~~--------~~vv~Fs~~~~-~l~~~~~~~l~~~~~  435 (538)
T 1yvr_A          366 PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVAR-TEKD--------SHMVAFSDEML-PCPITVNMLLHEVVE  435 (538)
T ss_dssp             CCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHH-HCSS--------EEEEEESSSEE-CCSCCTTSCHHHHHH
T ss_pred             CCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HCCC--------CEEEEECCCEE-ECCCCHHHHHHHHHH
T ss_conf             7786389999764554374448975799999999999998-5799--------87999769358-727771014999999


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             97401568874564237889999874211012346777666169999840458888889789999999999789879999
Q gi|254780833|r  243 KINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAI  322 (371)
Q Consensus       243 ~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tI  322 (371)
                      .+.. ..+|+|++..++.|+...               ....+++|++|||+.+.+...+...........+.+.++++|
T Consensus       436 ~~~~-~~~ggT~~~~~i~~a~~~---------------~~~~D~~IvlTD~e~~~g~~~p~~al~~Yr~k~~~~ak~v~v  499 (538)
T 1yvr_A          436 KMSD-ITMGSTDCALPMLWAQKT---------------NTAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVC  499 (538)
T ss_dssp             HHTT-CCCSCCCTTHHHHHHHHT---------------TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEE
T ss_pred             HHHC-CCCCCCCHHHHHHHHHHC---------------CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             9843-678986189999999961---------------556898999817997789889999999999984899759999


Q ss_pred             EECCCC
Q ss_conf             941864
Q gi|254780833|r  323 GVQAEA  328 (371)
Q Consensus       323 g~~~~~  328 (371)
                      ++....
T Consensus       500 ~l~~~~  505 (538)
T 1yvr_A          500 AMTSNG  505 (538)
T ss_dssp             ECSSSS
T ss_pred             ECCCCC
T ss_conf             856898


No 27 
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A*
Probab=96.69  E-value=0.025  Score=31.12  Aligned_cols=145  Identities=14%  Similarity=0.152  Sum_probs=76.2

Q ss_pred             CEEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC----------CEEECCCCC-CH
Q ss_conf             06998527631156678-7214898999998750023355553110479878863674----------178166655-87
Q gi|254780833|r  170 DMMMVLDVSLSMNDHFG-PGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK----------IVQTFPLAW-GV  237 (371)
Q Consensus       170 di~~viD~SgSm~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~----------~~~~~~lt~-~~  237 (371)
                      .++|+||.|.||-...+ .....+..+.+.+..++...-.   ......+|++-|+..          .+...+|.. +.
T Consensus        37 ~iiflID~s~sM~~~~~~~~~s~~~~al~~i~~l~~~kIi---~~~kD~vgvvl~gt~~t~n~~~~~ni~v~~~l~~p~~  113 (609)
T 1jey_A           37 SLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKII---SSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGA  113 (609)
T ss_dssp             EEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHH---TTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCH
T ss_pred             EEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC---CCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCH
T ss_conf             8999998988886878888878599999999999984476---7999849999975789888789885699604888898


Q ss_pred             HHHHHHHHCC-------------CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC--H
Q ss_conf             8999997401-------------568874564237889999874211012346777666169999840458888889--7
Q gi|254780833|r  238 QHIQEKINRL-------------IFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID--N  302 (371)
Q Consensus       238 ~~~~~~i~~l-------------~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~--~  302 (371)
                      ..++ .+..+             ..........++..+.+++..         .......|-|+|+||+++-.....  .
T Consensus       114 ~~ik-~L~~l~~~~~~~~~~~~~~~~~~~~l~~aL~~~~~~f~~---------~~~k~~~krI~lfTd~d~P~~~d~~~~  183 (609)
T 1jey_A          114 KRIL-ELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSD---------VQFKMSHKRIMLFTNEDNPHGNDSAKA  183 (609)
T ss_dssp             HHHH-HHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHT---------CSSCEEEEEEEEEESCSCTTTTCHHHH
T ss_pred             HHHH-HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---------HCCCCCCCEEEEECCCCCCCCCCHHHH
T ss_conf             9999-999764123431000256766544699999999999986---------020236757999868998788851779


Q ss_pred             HHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             8999999999978987999994186
Q gi|254780833|r  303 KESLFYCNEAKRRGAIVYAIGVQAE  327 (371)
Q Consensus       303 ~~~~~~c~~~k~~gi~i~tIg~~~~  327 (371)
                      .........+++.||.|..+.++.+
T Consensus       184 ~~~~~~~~dl~~~gI~i~~~~i~~~  208 (609)
T 1jey_A          184 SRARTKAGDLRDTGIFLDLMHLKKP  208 (609)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEBCCT
T ss_pred             HHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf             9999999999970905777335788


No 28 
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=96.30  E-value=0.044  Score=29.63  Aligned_cols=166  Identities=12%  Similarity=0.116  Sum_probs=95.0

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC-CCCEEEEEEEEEECCCCEE---------------
Q ss_conf             467406998527631156678721489899999875002335555-3110479878863674178---------------
Q gi|254780833|r  166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIP-DVNNVVRSGLVTFSSKIVQ---------------  229 (371)
Q Consensus       166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~---------------  229 (371)
                      ..+.-.+|++|.|.+--..     .-++.+.+++...++...... ......++|+++|+.....               
T Consensus       175 ~~pp~~vfvIDvS~~av~~-----g~~~~~~~~l~~~l~~lp~~~~~~~~~~~VglItf~~~v~~~~~~~~~~~~~~~v~  249 (770)
T 3efo_B          175 PNPPAFIFMIDVSYSNIKN-----GLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVV  249 (770)
T ss_dssp             CCCCEEEEEEECSHHHHHT-----THHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEE
T ss_pred             CCCCEEEEEEECCHHHHHH-----HHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEEECCEEEEECCCCCCCCCEEEEC
T ss_conf             9997899999897577664-----59999999999999856222303677537999981671899557888675403411


Q ss_pred             --------------ECCCCCCHHHHHHHHHCCC------CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf             --------------1666558789999974015------68874564237889999874211012346777666169999
Q gi|254780833|r  230 --------------TFPLAWGVQHIQEKINRLI------FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIF  289 (371)
Q Consensus       230 --------------~~~lt~~~~~~~~~i~~l~------~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl  289 (371)
                                    ..++......+.+.++.+.      ....+....++..+...+....       .+    -|+ ++
T Consensus       250 ~d~~~~~~p~~~~~l~~l~e~~~~i~~~L~~l~~~~~~~~~~~~~~g~Al~~a~~~l~~~~-------~g----Gki-i~  317 (770)
T 3efo_B          250 TDVGEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAAD-------CP----GKL-FI  317 (770)
T ss_dssp             CCTTSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHT-------CC----EEE-EE
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHCCC-------CC----CEE-EE
T ss_conf             5854346556445212089989999999862312205788887438999999999971569-------99----639-99


Q ss_pred             EECCCC-CCCCC----------------------CHHHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC--CCCEEE
Q ss_conf             840458-88888----------------------978999999999978987999994186-4279899833--898089
Q gi|254780833|r  290 LTDGEN-SSPNI----------------------DNKESLFYCNEAKRRGAIVYAIGVQAE-AADQFLKNCA--SPDRFY  343 (371)
Q Consensus       290 ~TDG~~-~~~~~----------------------~~~~~~~~c~~~k~~gi~i~tIg~~~~-~~~~~l~~cA--s~~~~y  343 (371)
                      +++|-+ +.+..                      ...--..++..+.+.||.|-.+.+..+ .+-..|..++  |+|+.|
T Consensus       318 f~s~~P~~~gpg~l~~r~~~~~~~~~~e~~~~~~~~~fY~~La~~~~~~~isvDlf~~s~~~~~l~~l~~l~~~TGG~v~  397 (770)
T 3efo_B          318 FHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLY  397 (770)
T ss_dssp             EECSCCCSSSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEE
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEE
T ss_conf             96579988887444465432235772234303621799999999999859469999944876787999999986496699


Q ss_pred             EECCH
Q ss_conf             82898
Q gi|254780833|r  344 SVQNS  348 (371)
Q Consensus       344 ~~~~~  348 (371)
                      ..++.
T Consensus       398 ~~~~f  402 (770)
T 3efo_B          398 KYNNF  402 (770)
T ss_dssp             ECTTC
T ss_pred             EECCC
T ss_conf             96898


No 29 
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=94.70  E-value=0.17  Score=26.11  Aligned_cols=181  Identities=12%  Similarity=0.112  Sum_probs=98.9

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC-CCCEEEEEEEEEECCCCEE---------------
Q ss_conf             467406998527631156678721489899999875002335555-3110479878863674178---------------
Q gi|254780833|r  166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIP-DVNNVVRSGLVTFSSKIVQ---------------  229 (371)
Q Consensus       166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~---------------  229 (371)
                      ..+.-.+|++|.|......     .-+..+.+++...++...... ......++|+++|+.....               
T Consensus       171 ~~pp~~vfvID~S~~a~~~-----g~~~~~~~~i~~~l~~lp~~~~~~~~~~~vglitf~~~v~~~~~~~~~~~~~~~v~  245 (766)
T 3eh2_A          171 PSPPAFIFMIDVSYNAIRT-----GLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVV  245 (766)
T ss_dssp             CCCCEEEEEEECSHHHHHT-----THHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEE
T ss_pred             CCCCEEEEEEECCHHHHHH-----HHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEC
T ss_conf             9987899999887477665-----48999999999999846122224775248999973877998446786433347640


Q ss_pred             --------------ECCCCCCHHHHHHHHHCCCC------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf             --------------16665587899999740156------8874564237889999874211012346777666169999
Q gi|254780833|r  230 --------------TFPLAWGVQHIQEKINRLIF------GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIF  289 (371)
Q Consensus       230 --------------~~~lt~~~~~~~~~i~~l~~------~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl  289 (371)
                                    ..|+......+.+.++.+..      ...+....++..+...+...           ...-|++++
T Consensus       246 ~d~~d~~~p~~~~~l~~~~e~~~~i~~lL~~l~~~~~~~~~~~~~~g~Al~~a~~~l~~~-----------~~gG~ii~f  314 (766)
T 3eh2_A          246 SDVADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAA-----------ECAGKLFLF  314 (766)
T ss_dssp             CCTTTCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHT-----------TCCEEEEEE
T ss_pred             CCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-----------CCCCCEEEE
T ss_conf             573113555665502155888999999987364334688788754799999999997055-----------779848999


Q ss_pred             EECCCCCCCCCC----------------------HHHHHHHHHHHHHCCCEEEEEEECCCC-CHHHHHHHC--CCCEEEE
Q ss_conf             840458888889----------------------789999999999789879999941864-279899833--8980898
Q gi|254780833|r  290 LTDGENSSPNID----------------------NKESLFYCNEAKRRGAIVYAIGVQAEA-ADQFLKNCA--SPDRFYS  344 (371)
Q Consensus       290 ~TDG~~~~~~~~----------------------~~~~~~~c~~~k~~gi~i~tIg~~~~~-~~~~l~~cA--s~~~~y~  344 (371)
                      .+.|.++.+...                      ..--..++..+...||.|-.+.++.+. +-..|..++  |+|+.|.
T Consensus       315 ~~s~P~t~GpG~l~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~~dl~~l~~l~~~TGG~v~~  394 (766)
T 3eh2_A          315 HTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYK  394 (766)
T ss_dssp             ECSCCCSSSTTCCCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEE
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEE
T ss_conf             51688778997420443223457620133305625899999999998695799999548765879999998744955999


Q ss_pred             ECCH--H-HHHHHHHHHHHHH
Q ss_conf             2898--9-9999999999964
Q gi|254780833|r  345 VQNS--R-KLHDAFLRIGKEM  362 (371)
Q Consensus       345 ~~~~--~-~L~~af~~I~~~i  362 (371)
                      .++.  . +..+....+.+.+
T Consensus       395 ~~~f~~~~~~~~l~~~l~~~~  415 (766)
T 3eh2_A          395 YASFQVENDQERFLSDLRRDV  415 (766)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCHHHHHHHHHHHHH
T ss_conf             689764222789999999975


No 30 
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=94.55  E-value=0.18  Score=25.89  Aligned_cols=174  Identities=17%  Similarity=0.098  Sum_probs=102.4

Q ss_pred             CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEE----------------
Q ss_conf             6740699852763115667872148989999987500233555531104798788636741781----------------
Q gi|254780833|r  167 IGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQT----------------  230 (371)
Q Consensus       167 ~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~----------------  230 (371)
                      .+.-.+|++|.|......     ..+..+.+++...++.....    ...++|+++|+......                
T Consensus       159 ~pp~~vfvID~S~~a~~~-----g~l~~~~~ai~~~l~~l~~~----~~~~VglItf~~~V~~~~~~~~~~~~~~~v~~d  229 (751)
T 3eh1_A          159 QPAVYLFVLDVSHNAVEA-----GYLTILCQSLLENLDKLPGD----SRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSD  229 (751)
T ss_dssp             CCCEEEEEEECSHHHHHH-----THHHHHHHHHHHHTTTSSCC----TTCEEEEEEESSSEEEEECCTTCSSCEEEEESC
T ss_pred             CCCEEEEEEECCHHHHHH-----HHHHHHHHHHHHHHHHCCCC----CCEEEEEEEECCEEEEEECCCCCCCCEEEEECC
T ss_conf             986899999896578661-----49999999999999747788----760899999899789984689866532674148


Q ss_pred             -------------CCCCCCHHHHHHHHHCCCC------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEE
Q ss_conf             -------------6665587899999740156------887456423788999987421101234677766616999984
Q gi|254780833|r  231 -------------FPLAWGVQHIQEKINRLIF------GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLT  291 (371)
Q Consensus       231 -------------~~lt~~~~~~~~~i~~l~~------~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~T  291 (371)
                                   .++......+...++.+..      ..++....|+..+...+..         .+     -.|++++
T Consensus       230 ~~~~~~p~~~~~l~~l~e~~~~i~~~L~~L~~~~~~~~~~~~~lg~Al~~a~~~l~~---------~g-----G~i~~f~  295 (751)
T 3eh1_A          230 IDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSP---------TG-----GRVSVFQ  295 (751)
T ss_dssp             TTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTT---------TC-----EEEEEEE
T ss_pred             CCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH---------CC-----CEEEEEE
T ss_conf             631246787646843799899999999854554148877641089999999998873---------29-----7599995


Q ss_pred             CCCCCCCCCC----------------------HHHHHHHHHHHHHCCCEEEEEEECCCC-CHHHHHHHC--CCCEEEEEC
Q ss_conf             0458888889----------------------789999999999789879999941864-279899833--898089828
Q gi|254780833|r  292 DGENSSPNID----------------------NKESLFYCNEAKRRGAIVYAIGVQAEA-ADQFLKNCA--SPDRFYSVQ  346 (371)
Q Consensus       292 DG~~~~~~~~----------------------~~~~~~~c~~~k~~gi~i~tIg~~~~~-~~~~l~~cA--s~~~~y~~~  346 (371)
                      +|.+|.|...                      ..--..++..+.+.||.|-.+.+..+. +-..|..++  |+|..|.-+
T Consensus       296 ~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdif~~s~~~~~l~~l~~l~~~TGG~v~~~~  375 (751)
T 3eh1_A          296 TQLPSLGAGLLQSREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYP  375 (751)
T ss_dssp             CSCCCSSTTCCCCCCCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECT
T ss_pred             CCCCCCCCCCEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf             67997889832126676667854567651405789999999999769479999945877787998889864786599936


Q ss_pred             C------HHHHHHHHHHHHHHHH
Q ss_conf             9------8999999999999640
Q gi|254780833|r  347 N------SRKLHDAFLRIGKEMV  363 (371)
Q Consensus       347 ~------~~~L~~af~~I~~~i~  363 (371)
                      +      ..++...+.++.+.++
T Consensus       376 ~f~~~~~~~~~~~l~~dl~~~l~  398 (751)
T 3eh1_A          376 SFHYTHNPSQAEKLQKDLKRYLT  398 (751)
T ss_dssp             TCBTTTBHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             86643365789999999998755


No 31 
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=94.18  E-value=0.22  Score=25.41  Aligned_cols=175  Identities=15%  Similarity=0.088  Sum_probs=98.6

Q ss_pred             CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEE----------------
Q ss_conf             6740699852763115667872148989999987500233555531104798788636741781----------------
Q gi|254780833|r  167 IGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQT----------------  230 (371)
Q Consensus       167 ~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~----------------  230 (371)
                      .+.-.+|++|.|..-...     .-+..+.+++...++.+..   .....++|+++|+......                
T Consensus       302 ~pp~~vFvIDvS~~av~s-----g~l~~~~~~i~~~L~~l~~---~~~~~~VglItfd~~V~~y~l~~~~~~~~~~~~~~  373 (926)
T 1m2v_B          302 PPATYCFLIDVSQSSIKS-----GLLATTINTLLQNLDSIPN---HDERTRISILCVDNAIHYFKIPLDSENNEESADQI  373 (926)
T ss_dssp             CCCBEEEEEECSHHHHHS-----CHHHHHHHHHHHTTTTSCC---TTSCCEECEEEESSSEEEEECCCC---------CC
T ss_pred             CCCEEEEEEECCHHHHHH-----HHHHHHHHHHHHHHHHCCC---CCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCC
T ss_conf             984899999898888777-----8999999999999974636---78773699999778489983577777643224675


Q ss_pred             --------------------CCCCCCHHHHHHHHHCCCC------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             --------------------6665587899999740156------88745642378899998742110123467776661
Q gi|254780833|r  231 --------------------FPLAWGVQHIQEKINRLIF------GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYK  284 (371)
Q Consensus       231 --------------------~~lt~~~~~~~~~i~~l~~------~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  284 (371)
                                          .++...+..+.+.++.|..      ...+....++..+...+..         .++    
T Consensus       374 ~~~~~~dl~~~f~p~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~lG~Al~~a~~ll~~---------~gG----  440 (926)
T 1m2v_B          374 NMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG---------VGG----  440 (926)
T ss_dssp             EEEEECCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTT---------TCE----
T ss_pred             CCCCCCCHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC---------CCC----
T ss_conf             2024101454056787543433688799999999842564068888732399999999998754---------798----


Q ss_pred             EEEEEEECCCCCCCCC-------------CHHH----------HHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC--C
Q ss_conf             6999984045888888-------------9789----------99999999978987999994186-4279899833--8
Q gi|254780833|r  285 KYIIFLTDGENSSPNI-------------DNKE----------SLFYCNEAKRRGAIVYAIGVQAE-AADQFLKNCA--S  338 (371)
Q Consensus       285 k~ivl~TDG~~~~~~~-------------~~~~----------~~~~c~~~k~~gi~i~tIg~~~~-~~~~~l~~cA--s  338 (371)
                       .|+++++|-+|.|..             ..+.          -..++..+.+.+|.|-.+.+..+ .+-..|..++  |
T Consensus       441 -kI~~f~sg~pt~G~G~l~~r~~~~~~~~~~e~~~~~~~~~~fY~~la~~~~~~~isvdlF~~~~~~~dla~l~~l~~~T  519 (926)
T 1m2v_B          441 -KIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFT  519 (926)
T ss_dssp             -EEEEEESSCCCSSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTT
T ss_pred             -EEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHC
T ss_conf             -6999947898778863422555333466034454246217999999999997790799998048767738877777634


Q ss_pred             CCEEEEEC-----CHHHHHHHHHHHHHHHH
Q ss_conf             98089828-----98999999999999640
Q gi|254780833|r  339 PDRFYSVQ-----NSRKLHDAFLRIGKEMV  363 (371)
Q Consensus       339 ~~~~y~~~-----~~~~L~~af~~I~~~i~  363 (371)
                      +|..|..+     ...+..+.+.++.+.++
T Consensus       520 GG~i~~y~~f~~~~~~d~~~l~~dl~~~~~  549 (926)
T 1m2v_B          520 AGQTHFYPGFSGKNPNDIVKFSTEFAKHIS  549 (926)
T ss_dssp             TCCEEEEESCCTTSHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             855998178764436778999999997533


No 32 
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=94.01  E-value=0.24  Score=25.20  Aligned_cols=170  Identities=13%  Similarity=0.097  Sum_probs=94.7

Q ss_pred             CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEEC----------------
Q ss_conf             7406998527631156678721489899999875002335555311047987886367417816----------------
Q gi|254780833|r  168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTF----------------  231 (371)
Q Consensus       168 ~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----------------  231 (371)
                      +.-.+||+|.|...        ..++.+++.+...++.+..      ..++|+++|.......-                
T Consensus       121 pp~~vFvID~s~~s--------~~l~~l~~sl~~~l~~lp~------~~~VglITf~~~v~~~~l~~~~~~~~~v~~g~~  186 (768)
T 1m2o_A          121 PPIFFFVVDLTSET--------ENLDSLKESIITSLSLLPP------NALIGLITYGNVVQLHDLSSETIDRCNVFRGDR  186 (768)
T ss_dssp             CCEEEEEEECCSCH--------HHHHHHHHHHHHHHHTSCT------TCEEEEEEESSEEEECCCSSSSSEEEEEEETTS
T ss_pred             CCEEEEEEECCCCH--------HHHHHHHHHHHHHHHHCCC------CCEEEEEEECCEEEEEECCCCCCCCEEEECCCC
T ss_conf             98899999898656--------7899999999999961999------766999994787999988787766303632765


Q ss_pred             -------------------------------------------CCCCCHHHHHHHHHCCCCCC---------CCCCCCHH
Q ss_conf             -------------------------------------------66558789999974015688---------74564237
Q gi|254780833|r  232 -------------------------------------------PLAWGVQHIQEKINRLIFGS---------TTKSTPGL  259 (371)
Q Consensus       232 -------------------------------------------~lt~~~~~~~~~i~~l~~~g---------~T~~~~~~  259 (371)
                                                                 |+......+.+.++.+....         ......++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pl~e~~~~i~~lL~~L~~~~~~~~~~~~~~r~~g~Al  266 (768)
T 1m2o_A          187 EYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSAL  266 (768)
T ss_dssp             CCCHHHHHHHHHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHH
T ss_pred             CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf             53177776554035666654332346763222355541112466999999999999875303556743245766507899


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC------------HH---------------HHHHHHHHH
Q ss_conf             889999874211012346777666169999840458888889------------78---------------999999999
Q gi|254780833|r  260 EYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID------------NK---------------ESLFYCNEA  312 (371)
Q Consensus       260 ~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~------------~~---------------~~~~~c~~~  312 (371)
                      ..+...+.....     ..+     -.|++++.|.+|.|...            ..               --..+...+
T Consensus       267 ~~A~~ll~~~~~-----~~G-----grI~~f~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~  336 (768)
T 1m2o_A          267 NIASLLLQGCYK-----NIP-----ARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRV  336 (768)
T ss_dssp             HHHHHHHHHHCT-----TSC-----CEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-----CCC-----CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHH
T ss_conf             999999987506-----788-----7899992799987885341444344456644432101220451789999999999


Q ss_pred             HHCCCEEEEEEECCCC-CHHHHHHHC--CCCEEEEECCH--HHHHHHHHHHHHH
Q ss_conf             9789879999941864-279899833--89808982898--9999999999996
Q gi|254780833|r  313 KRRGAIVYAIGVQAEA-ADQFLKNCA--SPDRFYSVQNS--RKLHDAFLRIGKE  361 (371)
Q Consensus       313 k~~gi~i~tIg~~~~~-~~~~l~~cA--s~~~~y~~~~~--~~L~~af~~I~~~  361 (371)
                      .+.||.|-.+.+..+. +-..|+.|+  |+|..|..++.  ..+.+.|....+.
T Consensus       337 ~~~~isvDiF~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~~  390 (768)
T 1m2o_A          337 AANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAK  390 (768)
T ss_dssp             HHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHHHHTTCB
T ss_pred             HHCCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf             878979999981487667186653775388509970777520128999999865


No 33 
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=91.75  E-value=0.5  Score=23.22  Aligned_cols=177  Identities=15%  Similarity=0.070  Sum_probs=99.4

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEE---------------
Q ss_conf             46740699852763115667872148989999987500233555531104798788636741781---------------
Q gi|254780833|r  166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQT---------------  230 (371)
Q Consensus       166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~---------------  230 (371)
                      ..+.-.+|++|.|..-...     .-+..+.+++...++....   .....++|+++|+......               
T Consensus       185 p~pp~~vFvIDvS~~av~~-----g~l~~~~~~i~~~L~~lp~---~~~~~~Vg~Itfd~~v~~~~l~~~~~~~~~~~~~  256 (810)
T 1pcx_A          185 PPPATYCFLIDVSQSSIKS-----GLLATTINTLLQNLDSIPN---HDERTRISILCVDNAIHYFKIPLDSENNEESADQ  256 (810)
T ss_dssp             CCCCEEEEEEECSHHHHHH-----THHHHHHHHHHHHTTTSCC---TTSCCEEEEEEESSSEEEEECCCGGGC-------
T ss_pred             CCCCEEEEEEECCHHHHHH-----HHHHHHHHHHHHHHHHCCC---CCCCEEEEEEEECCCEEEEECCCCCCCCCCCCCC
T ss_conf             9985899999897788664-----7999999999998751436---7876059999958828999656777764333344


Q ss_pred             ---------------------CCCCCCHHHHHHHHHCCC---C---CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             ---------------------666558789999974015---6---8874564237889999874211012346777666
Q gi|254780833|r  231 ---------------------FPLAWGVQHIQEKINRLI---F---GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDY  283 (371)
Q Consensus       231 ---------------------~~lt~~~~~~~~~i~~l~---~---~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  283 (371)
                                           .++...+..+...++.+.   .   ...+....+++.+...+..         .++   
T Consensus       257 ~~~~~~~dl~~~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~alG~Al~~a~~ll~~---------~gG---  324 (810)
T 1pcx_A          257 INMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG---------VGG---  324 (810)
T ss_dssp             CEEECCCCTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTT---------TCE---
T ss_pred             CCCCCCCCHHHCCCCCCCCCEEEHHHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHC---------CCC---
T ss_conf             43244444233146787665120689799999999855453169888732299999999998745---------798---


Q ss_pred             CEEEEEEECCCCCCCCCCH-----------------------HHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC--
Q ss_conf             1699998404588888897-----------------------8999999999978987999994186-4279899833--
Q gi|254780833|r  284 KKYIIFLTDGENSSPNIDN-----------------------KESLFYCNEAKRRGAIVYAIGVQAE-AADQFLKNCA--  337 (371)
Q Consensus       284 ~k~ivl~TDG~~~~~~~~~-----------------------~~~~~~c~~~k~~gi~i~tIg~~~~-~~~~~l~~cA--  337 (371)
                        .|++++.|-+|.|...-                       .--..++..+.+.||.|-.+.+..+ .+-..|..++  
T Consensus       325 --kI~~f~s~~pt~GpG~l~~r~~~~~~~~~~~~~~l~~~~~~fY~~la~~~~~~~isvDlF~~s~~~~dlatl~~l~~~  402 (810)
T 1pcx_A          325 --KIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRF  402 (810)
T ss_dssp             --EEEEEESSCCCSSTTCCCC--------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHT
T ss_pred             --EEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf             --699995779867886321045544457734556532537899999999999879359998604777772888888874


Q ss_pred             CCCEEEEE-----CCHHHHHHHHHHHHHHHHH
Q ss_conf             89808982-----8989999999999996400
Q gi|254780833|r  338 SPDRFYSV-----QNSRKLHDAFLRIGKEMVK  364 (371)
Q Consensus       338 s~~~~y~~-----~~~~~L~~af~~I~~~i~~  364 (371)
                      |+|..|.-     ....+..+.+.++.+.++.
T Consensus       403 TGG~v~~y~~F~~~~~~d~~~l~~dl~~~l~~  434 (810)
T 1pcx_A          403 TAGQTHFYPGFSGKNPNDIVKFSTEFAKHISM  434 (810)
T ss_dssp             TTCCEEEEETCCTTSHHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             58469980686644345789999999986566


No 34 
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=90.18  E-value=0.71  Score=22.32  Aligned_cols=171  Identities=15%  Similarity=0.166  Sum_probs=93.9

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEEC--------------
Q ss_conf             467406998527631156678721489899999875002335555311047987886367417816--------------
Q gi|254780833|r  166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTF--------------  231 (371)
Q Consensus       166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--------------  231 (371)
                      ..|.-.+||+|.|...        ..++.+++.+...++.+..      ..++|+++|.......-              
T Consensus       130 ~~pp~~vFvID~s~~~--------~~l~~l~~sl~~~l~~lp~------~~~VglITf~~~V~~y~l~~~~~~~~~vf~g  195 (769)
T 2nut_A          130 QMPLIFLYVVDTCMED--------EDLQALKESMQMSLSLLPP------TALVGLITFGRMVQVHELGCEGISKSYVFRG  195 (769)
T ss_dssp             CCCCEEEEEEECCSCH--------HHHHHHHHHHHHHHTTSCT------TCEEEEEEESSEEEEEESSCCSSCEEEEEET
T ss_pred             CCCCEEEEEEECCCCH--------HHHHHHHHHHHHHHHHCCC------CCEEEEEEECCEEEEEECCCCCCCCCEECCC
T ss_conf             9997899999887665--------7899999999999972898------6559999957769999668877663202168


Q ss_pred             ----------------------------------------CCCCCHHHHHHHHHCCCCCCC---------CCCCCHHHHH
Q ss_conf             ----------------------------------------665587899999740156887---------4564237889
Q gi|254780833|r  232 ----------------------------------------PLAWGVQHIQEKINRLIFGST---------TKSTPGLEYA  262 (371)
Q Consensus       232 ----------------------------------------~lt~~~~~~~~~i~~l~~~g~---------T~~~~~~~~~  262 (371)
                                                              |+......+.+.++.|.....         .....++..+
T Consensus       196 ~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~fl~~~~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A  275 (769)
T 2nut_A          196 TKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIA  275 (769)
T ss_dssp             TSCCCSHHHHHHHC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             75446787765337655665444566534578863310576899999999999985405666643347754407899999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC---------------------------HHHHHHHHHHHHHC
Q ss_conf             999874211012346777666169999840458888889---------------------------78999999999978
Q gi|254780833|r  263 YNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID---------------------------NKESLFYCNEAKRR  315 (371)
Q Consensus       263 ~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~---------------------------~~~~~~~c~~~k~~  315 (371)
                      ...+.....     ..+     -.|++++.|.+|.|...                           ..--..++..+...
T Consensus       276 ~~ll~~~~~-----~~G-----grI~~F~sg~pt~GpG~l~~~~~~~~~rs~~di~k~~~~~~~~a~~fY~~la~~~~~~  345 (769)
T 2nut_A          276 VGLLECTFP-----NTG-----ARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATT  345 (769)
T ss_dssp             HHHHHHHSC-----SSC-----CEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCC-----CCC-----CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHC
T ss_conf             999986436-----898-----7899994799976885331434343346644543220111460789999999999977


Q ss_pred             CCEEEEEEECCC-CCHHHHHHHC--CCCEEEEECC--HHHHHHHHHHHHH
Q ss_conf             987999994186-4279899833--8980898289--8999999999999
Q gi|254780833|r  316 GAIVYAIGVQAE-AADQFLKNCA--SPDRFYSVQN--SRKLHDAFLRIGK  360 (371)
Q Consensus       316 gi~i~tIg~~~~-~~~~~l~~cA--s~~~~y~~~~--~~~L~~af~~I~~  360 (371)
                      ||.|-.+.+..+ .+-..|+.|+  |+|..|..++  .....+.|..+.+
T Consensus       346 ~isvDiF~~~~~~~~l~~m~~l~~~TGG~v~~~~~F~~~~~~~~l~~~~~  395 (769)
T 2nut_A          346 GHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFT  395 (769)
T ss_dssp             TCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTTC
T ss_pred             CEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             95899997157555707576577616846998379860443999999987


No 35 
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=43.57  E-value=12  Score=14.90  Aligned_cols=51  Identities=16%  Similarity=0.108  Sum_probs=27.1

Q ss_pred             HHHHHHHHCCCEEEEEEECCC-------CCHHHHHHHC--CC-CEEEEECCHHHHHHHHHHHHH
Q ss_conf             999999978987999994186-------4279899833--89-808982898999999999999
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQAE-------AADQFLKNCA--SP-DRFYSVQNSRKLHDAFLRIGK  360 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~~~-------~~~~~l~~cA--s~-~~~y~~~~~~~L~~af~~I~~  360 (371)
                      .++......||++.+|..|.=       ..++..+...  .| ++   .-.++|+.++..-++.
T Consensus       161 ~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R---~~~pedia~~v~fL~S  221 (245)
T 1uls_A          161 TLALELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATPLGR---AGKPLEVAYAALFLLS  221 (245)
T ss_dssp             HHHHHHGGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCTTCS---CBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHC
T ss_conf             999996042929999962879870100169999999985699889---9499999999999956


No 36 
>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A
Probab=42.38  E-value=13  Score=14.78  Aligned_cols=54  Identities=6%  Similarity=0.092  Sum_probs=27.5

Q ss_pred             HHHCCCEEEEEEECCCCCHHHHHHH---------C--CC-CEEEEECCHHHHHHHHHHHHHH----HHHEEEEE
Q ss_conf             9978987999994186427989983---------3--89-8089828989999999999996----40007874
Q gi|254780833|r  312 AKRRGAIVYAIGVQAEAADQFLKNC---------A--SP-DRFYSVQNSRKLHDAFLRIGKE----MVKQRILY  369 (371)
Q Consensus       312 ~k~~gi~i~tIg~~~~~~~~~l~~c---------A--s~-~~~y~~~~~~~L~~af~~I~~~----i~~~~i~~  369 (371)
                      ++..||+|.+|..|.- +.+.++.+         .  .| ++   .-.++|+.++..-+..+    |+-+.|.+
T Consensus       175 l~~~gIrVN~V~PG~i-~T~~~~~~~~~~~~~~~~~~~pl~R---~g~pediA~~v~fL~S~~s~~itG~~i~V  244 (251)
T 1zk4_A          175 LKDYDVRVNTVHPGYI-KTPLVDDLPGAEEAMSQRTKTPMGH---IGEPNDIAYICVYLASNESKFATGSEFVV  244 (251)
T ss_dssp             HTTCSEEEEEEEECCB-CCHHHHTSTTHHHHHTSTTTCTTSS---CBCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred             CCCCCEEEEEEEECCC-CCHHHHCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHCCHHCCCCCCEEEE
T ss_conf             0699979999961889-7833430577399999984799789---82999999999999573325966877887


No 37 
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=40.83  E-value=13  Score=14.64  Aligned_cols=39  Identities=21%  Similarity=0.069  Sum_probs=28.8

Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             875203687189999999999999999999999999999
Q gi|254780833|r    7 RNFFYNCKGSISILTAILLPVIFIVMGLVIETSHKFFVK   45 (371)
Q Consensus         7 ~~f~~d~~G~vai~~al~l~~li~~~g~aVD~~r~~~~k   45 (371)
                      +|-.+..+|..+++..|+++.++++.-++|-++.....|
T Consensus        41 ~~~p~~~d~~~~~lYIL~vmgffgff~~gImlsyiRSKk   79 (138)
T 2k21_A           41 RRSPRSGDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKK   79 (138)
T ss_dssp             GSCSCCTTCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             668999998522679999999999999999998778875


No 38 
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=35.03  E-value=16  Score=14.08  Aligned_cols=60  Identities=12%  Similarity=0.162  Sum_probs=31.9

Q ss_pred             HHHHHHHHCCCEEEEEEECCC----------CCHHHH----HHHCCC-CEEEEECCHHHHHHHHHHHHHH----HHHEEE
Q ss_conf             999999978987999994186----------427989----983389-8089828989999999999996----400078
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQAE----------AADQFL----KNCASP-DRFYSVQNSRKLHDAFLRIGKE----MVKQRI  367 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~~~----------~~~~~l----~~cAs~-~~~y~~~~~~~L~~af~~I~~~----i~~~~i  367 (371)
                      .++..+...||+|.+|..|.-          .+....    +....+ ++   .-.++|+.++.--++.+    |+-+.|
T Consensus       180 ~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~gR---~~~pediA~~v~fL~Sd~s~~itG~~i  256 (278)
T 2bgk_A          180 SLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGT---LLRAEDVADAVAYLAGDESKYVSGLNL  256 (278)
T ss_dssp             HHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSCSC---CCCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHHHHHCCEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCC---CCCHHHHHHHHHHHHCCHHCCCCCCEE
T ss_conf             99998625490999996198987466543027878999999743465789---819999999999996714359668668


Q ss_pred             EE
Q ss_conf             74
Q gi|254780833|r  368 LY  369 (371)
Q Consensus       368 ~~  369 (371)
                      .+
T Consensus       257 ~V  258 (278)
T 2bgk_A          257 VI  258 (278)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             86


No 39 
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=33.07  E-value=18  Score=13.89  Aligned_cols=22  Identities=5%  Similarity=0.048  Sum_probs=11.3

Q ss_pred             HHHHHHH-HHHHHHHHHEEEEEE
Q ss_conf             9999999-999996400078741
Q gi|254780833|r  349 RKLHDAF-LRIGKEMVKQRILYN  370 (371)
Q Consensus       349 ~~L~~af-~~I~~~i~~~~i~~~  370 (371)
                      .++.+-. +.|.++|..=.|.++
T Consensus       271 ~~~~~~i~d~i~~~I~~G~i~v~  293 (296)
T 2hqb_A          271 DEVREQITDAISTYIQTGQFPHE  293 (296)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCCC-
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99999999999868666986488


No 40 
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase; 2.09A {Bartonella henselae str} PDB: 3enn_A 3emk_A
Probab=30.79  E-value=19  Score=13.66  Aligned_cols=60  Identities=13%  Similarity=0.118  Sum_probs=32.3

Q ss_pred             HHHHHHHHCCCEEEEEEECCCC-------CHHHHHHHC--CC-CEEEEECCHHHHHHHHHHHHHH----HHHEEEEE
Q ss_conf             9999999789879999941864-------279899833--89-8089828989999999999996----40007874
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQAEA-------ADQFLKNCA--SP-DRFYSVQNSRKLHDAFLRIGKE----MVKQRILY  369 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~~~~-------~~~~l~~cA--s~-~~~y~~~~~~~L~~af~~I~~~----i~~~~i~~  369 (371)
                      .++......||++.+|..|.-.       .++..+...  .| ++   .-.++|+.++..-++.+    |+-+.|.+
T Consensus       186 ~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R---~~~pediA~~v~fL~Sd~s~~iTG~~i~V  259 (266)
T 3grp_A          186 ALAQEIASRNITVNCIAPGFIKSAMTDKLNEKQKEAIMAMIPMKR---MGIGEEIAFATVYLASDEAAYLTGQTLHI  259 (266)
T ss_dssp             HHHHHHGGGTEEEEEEEECSBCSHHHHTCCHHHHHHHHTTCTTCS---CBCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred             HHHHHHCCCCEEEEEEEECCCCCCCHHCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHCCHHCCCCCCEEEE
T ss_conf             999996624928999960888872001039999999985699889---96999999999999571225976865997


No 41 
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=27.82  E-value=13  Score=14.70  Aligned_cols=60  Identities=12%  Similarity=0.142  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEECC-CCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             7899999999997898799999418-6427989983389808982898999999999999640
Q gi|254780833|r  302 NKESLFYCNEAKRRGAIVYAIGVQA-EAADQFLKNCASPDRFYSVQNSRKLHDAFLRIGKEMV  363 (371)
Q Consensus       302 ~~~~~~~c~~~k~~gi~i~tIg~~~-~~~~~~l~~cAs~~~~y~~~~~~~L~~af~~I~~~i~  363 (371)
                      ......+++.++++||-+..|.+-. +.++..||-|.+..|  .-++-+.+.++|+++.+++.
T Consensus       356 ~~~~~~~~~~L~~~Gi~v~~i~~Ptvp~g~~rlR~~~~a~h--T~edId~~v~~l~~v~~~lg  416 (427)
T 2w8t_A          356 QEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEH--TPAQIQTVLGMFQAAGRAVG  416 (427)
T ss_dssp             HHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTC--CHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCC--CHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999848945976789988999725999847669--99999999999999999829


No 42 
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=25.94  E-value=24  Score=13.14  Aligned_cols=50  Identities=10%  Similarity=0.019  Sum_probs=25.8

Q ss_pred             HHHHHHHHCCCEEEEEEECCCCCHHHHHH----HC-CC-CEEEEECCHHHHHHHHHHHHH
Q ss_conf             99999997898799999418642798998----33-89-808982898999999999999
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQAEAADQFLKN----CA-SP-DRFYSVQNSRKLHDAFLRIGK  360 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~~~~~~~~l~~----cA-s~-~~~y~~~~~~~L~~af~~I~~  360 (371)
                      .++......||++.+|..|.- +.+..+.    .. .+ ++   .-.++|+.++..-++.
T Consensus       166 ~lA~el~~~gIrVN~I~PG~i-~T~~~~~~~~~~~~~pl~R---~~~pediA~~v~fL~S  221 (260)
T 1nff_A          166 STALELGPSGIRVNSIHPGLV-KTPMTDWVPEDIFQTALGR---AAEPVEVSNLVVYLAS  221 (260)
T ss_dssp             HHHHHHGGGTEEEEEEEECCB-CSGGGTTSCTTCSCCSSSS---CBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHCEEEEEEEECCC-CCCHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHC
T ss_conf             999985042949999960888-8733555168897334468---8799999999999967


No 43 
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=23.25  E-value=27  Score=12.83  Aligned_cols=59  Identities=17%  Similarity=0.203  Sum_probs=30.2

Q ss_pred             HHHHHHHHCCCEEEEEEECCCCCHHHHH---------HHCC--C-CEEEEECCHHHHHHHHHHHHHH----HHHEEEEE
Q ss_conf             9999999789879999941864279899---------8338--9-8089828989999999999996----40007874
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQAEAADQFLK---------NCAS--P-DRFYSVQNSRKLHDAFLRIGKE----MVKQRILY  369 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~~~~~~~~l~---------~cAs--~-~~~y~~~~~~~L~~af~~I~~~----i~~~~i~~  369 (371)
                      .+...+...||++.+|..|.- +.+.++         ....  | ++   .-.++|+.++..-++.+    |+-+.|.+
T Consensus       187 ~lA~el~~~gIrVN~I~PG~v-~T~~~~~~~~~~~~~~~~~~~pl~R---~~~pediA~~v~fL~S~~s~~itG~~i~V  261 (266)
T 3o38_A          187 CSAIEAVEFGVRINAVSPSIA-RHKFLEKTSSSELLDRLASDEAFGR---AAEPWEVAATIAFLASDYSSYMTGEVVSV  261 (266)
T ss_dssp             HHHHHHGGGTEEEEEEEECCC-CC-----------------CCTTSS---CCCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred             HHHHHHHHHCEEEEEEECCCC-CCCHHHCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHCCHHCCCCCCEEEE
T ss_conf             999986041938999978778-8700103489999999973799789---84999999999999570437976856886


No 44 
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=23.22  E-value=27  Score=12.82  Aligned_cols=22  Identities=14%  Similarity=0.277  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHEEEEE
Q ss_conf             8999999999999640007874
Q gi|254780833|r  348 SRKLHDAFLRIGKEMVKQRILY  369 (371)
Q Consensus       348 ~~~L~~af~~I~~~i~~~~i~~  369 (371)
                      +.++.+..+++.++|..=.|.+
T Consensus       288 ~~~~~~~v~~~~~~I~~G~i~V  309 (318)
T 2fqx_A          288 SSAVMEKIRSFEEKIVSKEIVV  309 (318)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSCC
T ss_pred             CHHHHHHHHHHHHHHHCCCCCC
T ss_conf             9999999999998887792078


No 45 
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3- hydroxybutyryl-COA dehydrogenase, MHBD; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=22.71  E-value=27  Score=12.76  Aligned_cols=51  Identities=16%  Similarity=0.107  Sum_probs=27.6

Q ss_pred             HHHHHHHHCCCEEEEEEECCCC-------CHHHHHHHCC----CCEEEEECCHHHHHHHHHHHHH
Q ss_conf             9999999789879999941864-------2798998338----9808982898999999999999
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQAEA-------ADQFLKNCAS----PDRFYSVQNSRKLHDAFLRIGK  360 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~~~~-------~~~~l~~cAs----~~~~y~~~~~~~L~~af~~I~~  360 (371)
                      .++......||++.+|..|.-.       .++..+....    .++   .-+++|+.+++.-+..
T Consensus       183 ~lA~ela~~gIrVN~I~PG~i~T~~~~~~~e~~~~~~~~~~pl~~R---~g~peevA~~v~fL~s  244 (265)
T 2o23_A          183 PIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPFPSR---LGDPAEYAHLVQAIIE  244 (265)
T ss_dssp             HHHHHHGGGTEEEEEEEECCBCCC----------CHHHHTCSSSCS---CBCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCEEEEEEECCCCCCCHHHHCCHHHHHHHHHCCCCCCC---CCCHHHHHHHHHHHHH
T ss_conf             9999956409778897018715812230899999999955998889---8299999999999986


No 46 
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=22.37  E-value=28  Score=12.72  Aligned_cols=60  Identities=15%  Similarity=0.197  Sum_probs=31.4

Q ss_pred             HHHHHHHHCCCEEEEEEECCC-------CCHHHHHHHC--CC-CEEEEECCHHHHHHHHHHHHHH----HHHEEEEE
Q ss_conf             999999978987999994186-------4279899833--89-8089828989999999999996----40007874
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQAE-------AADQFLKNCA--SP-DRFYSVQNSRKLHDAFLRIGKE----MVKQRILY  369 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~~~-------~~~~~l~~cA--s~-~~~y~~~~~~~L~~af~~I~~~----i~~~~i~~  369 (371)
                      .+..+....||++.+|..|.-       ..++..+...  .| ++   .-.++|+.++..-+..+    |+-+.|.+
T Consensus       168 ~la~e~~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R---~~~pedvA~~v~fL~S~~s~~itG~~i~v  241 (248)
T 3op4_A          168 SMAREVASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQVPAGR---LGDPREIASAVAFLASPEAAYITGETLHV  241 (248)
T ss_dssp             HHHHHHGGGTEEEEEEEECSBSSTTTTTSCHHHHHHHHHTCTTCS---CBCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred             HHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHCCHHCCCCCCEEEE
T ss_conf             889986324908999951989773331049999999985699889---85999999999999582225976886997


No 47 
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=22.27  E-value=28  Score=12.71  Aligned_cols=60  Identities=15%  Similarity=0.085  Sum_probs=31.5

Q ss_pred             HHHHHHHHCCCEEEEEEECCCC---------CHHHHHHHC--CC-CEEEEECCHHHHHHHHHHHHHH----HHHEEEEE
Q ss_conf             9999999789879999941864---------279899833--89-8089828989999999999996----40007874
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQAEA---------ADQFLKNCA--SP-DRFYSVQNSRKLHDAFLRIGKE----MVKQRILY  369 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~~~~---------~~~~l~~cA--s~-~~~y~~~~~~~L~~af~~I~~~----i~~~~i~~  369 (371)
                      .++......||+|.+|..|.-.         +.+.++...  .| ++   .-.++|+.++..-++.+    |+-+.|.+
T Consensus       195 ~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R---~g~pedvA~~v~fL~S~~s~~iTG~~i~V  270 (276)
T 2b4q_A          195 MLAKELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASIPMGR---WGRPEEMAALAISLAGTAGAYMTGNVIPI  270 (276)
T ss_dssp             HHHHHHGGGTEEEEEEEECCCCSTTTHHHHHCHHHHHHHHHTSTTSS---CCCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred             HHHHHHCCCCEEEEEEECCCCCCHHHHHHCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHCCHHCCCCCCEEEE
T ss_conf             99999661581899996486987778641479999999985699889---80999999999999673226976874867


No 48 
>2qip_A Protein of unknown function VPA0982; APC85975, structural genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus rimd 2210633}
Probab=22.21  E-value=28  Score=12.70  Aligned_cols=52  Identities=23%  Similarity=0.437  Sum_probs=33.5

Q ss_pred             CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEEECCCCCHHHHHHHCCCCEEEEECC
Q ss_conf             616999984045888888978999999999978-98799999418642798998338980898289
Q gi|254780833|r  283 YKKYIIFLTDGENSSPNIDNKESLFYCNEAKRR-GAIVYAIGVQAEAADQFLKNCASPDRFYSVQN  347 (371)
Q Consensus       283 ~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~-gi~i~tIg~~~~~~~~~l~~cAs~~~~y~~~~  347 (371)
                      ...++++=.||+          -..+.+.++++ |.+|..+|+....+.. |+.+|  ++|+..++
T Consensus       109 ~d~~vLvSgDsD----------f~p~v~~lr~~~gk~V~v~~~~~~~s~~-L~~~a--d~fi~id~  161 (165)
T 2qip_A          109 VDRVILVSGDGD----------FSLLVERIQQRYNKKVTVYGVPRLTSQT-LIDCA--DNFVAIDD  161 (165)
T ss_dssp             CSEEEEECCCGG----------GHHHHHHHHHHHCCEEEEEECGGGSCHH-HHHHS--SEEEECSG
T ss_pred             CCEEEEEECCHH----------HHHHHHHHHHHCCCEEEEEECCCCCCHH-HHHHC--CEEEECCC
T ss_conf             898999957762----------8999999998589789999789988399-99869--98899173


No 49 
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=22.17  E-value=28  Score=12.70  Aligned_cols=54  Identities=11%  Similarity=0.039  Sum_probs=26.4

Q ss_pred             HHHHHHH--HCCCEEEEEEECCCCCHHHHHHHCCCC--------EEEEECCHHHHHHHHHHHHHH
Q ss_conf             9999999--789879999941864279899833898--------089828989999999999996
Q gi|254780833|r  307 FYCNEAK--RRGAIVYAIGVQAEAADQFLKNCASPD--------RFYSVQNSRKLHDAFLRIGKE  361 (371)
Q Consensus       307 ~~c~~~k--~~gi~i~tIg~~~~~~~~~l~~cAs~~--------~~y~~~~~~~L~~af~~I~~~  361 (371)
                      .++.+++  ..||++.+|..|.-. .+..+......        -.-..-.++|+.++.--++.+
T Consensus       200 ~la~El~~~~~gIrvn~I~PG~v~-T~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~fL~S~  263 (279)
T 1xg5_A          200 GLRQELREAQTHIRATCISPGVVE-TQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEAVIYVLST  263 (279)
T ss_dssp             HHHHHHHHTTCCCEEEEEEESCBC-SSHHHHHTTTCHHHHHHHHC---CBCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHCCCCEEEEEEEECCCC-CHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             999999858999899999718698-8655521602299998438788882999999999999687


No 50 
>3imf_A Short chain dehydrogenase; structural genomics, infectious diseases, center for structural genomics of infectious diseases, oxidoreductase; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=21.91  E-value=28  Score=12.66  Aligned_cols=59  Identities=14%  Similarity=0.172  Sum_probs=29.7

Q ss_pred             HHHHH-HHCCCEEEEEEECCC---CC-------HHHHHHHC--CC-CEEEEECCHHHHHHHHHHHHHH----HHHEEEEE
Q ss_conf             99999-978987999994186---42-------79899833--89-8089828989999999999996----40007874
Q gi|254780833|r  308 YCNEA-KRRGAIVYAIGVQAE---AA-------DQFLKNCA--SP-DRFYSVQNSRKLHDAFLRIGKE----MVKQRILY  369 (371)
Q Consensus       308 ~c~~~-k~~gi~i~tIg~~~~---~~-------~~~l~~cA--s~-~~~y~~~~~~~L~~af~~I~~~----i~~~~i~~  369 (371)
                      ++... .+.||++.+|..|.-   ..       ++..+...  .| ++   .-.++|+.++..-++.+    |+-+.|.+
T Consensus       170 lA~ela~~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~~pl~R---~g~pedia~~v~fL~S~~a~~itG~~i~V  246 (257)
T 3imf_A          170 LAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSVPLGR---LGTPEEIAGLAYYLCSDEAAYINGTCMTM  246 (257)
T ss_dssp             HHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTTSTTCS---CBCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCCHHHHHCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHCCHHCCCCCCEEEE
T ss_conf             999966755918999953878572033223599999999984699889---85999999999999683225976865887


No 51 
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=21.71  E-value=28  Score=12.64  Aligned_cols=20  Identities=10%  Similarity=-0.002  Sum_probs=14.3

Q ss_pred             HHHHHHHHCCCEEEEEEECC
Q ss_conf             99999997898799999418
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQA  326 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~~  326 (371)
                      .++..+...||+|.+|..|.
T Consensus       188 ~lA~ela~~gIrVN~V~PG~  207 (277)
T 3gvc_A          188 ITAAELRSSGIRSNTLLPAF  207 (277)
T ss_dssp             HHHHHHGGGTEEEEEEEECS
T ss_pred             HHHHHHHHHCEEEEEEEECC
T ss_conf             99998604191999996288


No 52 
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protein structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2
Probab=21.01  E-value=29  Score=12.55  Aligned_cols=53  Identities=19%  Similarity=0.085  Sum_probs=29.2

Q ss_pred             HHHHHHHHHCCCEEEEEEECCC-------CCHHHHHHHC--CC-CEEEEECCHHHHHHHHHHHHHH
Q ss_conf             9999999978987999994186-------4279899833--89-8089828989999999999996
Q gi|254780833|r  306 LFYCNEAKRRGAIVYAIGVQAE-------AADQFLKNCA--SP-DRFYSVQNSRKLHDAFLRIGKE  361 (371)
Q Consensus       306 ~~~c~~~k~~gi~i~tIg~~~~-------~~~~~l~~cA--s~-~~~y~~~~~~~L~~af~~I~~~  361 (371)
                      ..++..+...||+|.+|..|.-       ..++..+...  .| ++   .-.++|+.++.--++.+
T Consensus       161 k~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R---~g~p~eiA~~v~fL~S~  223 (263)
T 2a4k_A          161 RTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPLGR---AGRPEEVAQAALFLLSE  223 (263)
T ss_dssp             HHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTSTTCS---CBCHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCHHHCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHCC
T ss_conf             9999986141909999962889871000499899999971799889---84999999999999573


No 53 
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=20.89  E-value=30  Score=12.53  Aligned_cols=50  Identities=22%  Similarity=0.110  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHH-CCCEEEEEEECCCC--CHHHHHHHC--CCCEEEEECCHHHHHH
Q ss_conf             99999999997-89879999941864--279899833--8980898289899999
Q gi|254780833|r  304 ESLFYCNEAKR-RGAIVYAIGVQAEA--ADQFLKNCA--SPDRFYSVQNSRKLHD  353 (371)
Q Consensus       304 ~~~~~c~~~k~-~gi~i~tIg~~~~~--~~~~l~~cA--s~~~~y~~~~~~~L~~  353 (371)
                      +++..+-.-+. .++++-+|--..-+  -+..|+.+|  +++.++.-+...+|.+
T Consensus        66 eaL~~Lv~N~~~g~l~v~aVkaP~fG~~r~~~L~DlAi~tGa~vi~~~~g~~l~~  120 (145)
T 1srv_A           66 EALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLEN  120 (145)
T ss_dssp             HHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGG
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCHHHHHCCCEEECCCCCCCCCC
T ss_conf             9999999998608817999939998655555442535313988862546745354


No 54 
>1k2w_A Sorbitol dehydrogenase; short-chain dehydrogenase, enzyme, oxidoreductase; 2.40A {Rhodobacter sphaeroides} SCOP: c.2.1.2
Probab=20.58  E-value=30  Score=12.50  Aligned_cols=20  Identities=25%  Similarity=0.037  Sum_probs=14.5

Q ss_pred             HHHHHHHHCCCEEEEEEECC
Q ss_conf             99999997898799999418
Q gi|254780833|r  307 FYCNEAKRRGAIVYAIGVQA  326 (371)
Q Consensus       307 ~~c~~~k~~gi~i~tIg~~~  326 (371)
                      .++......||+|.+|..|.
T Consensus       165 ~lA~el~~~gIrVN~I~PG~  184 (256)
T 1k2w_A          165 SAGLNLIRHGINVNAIAPGV  184 (256)
T ss_dssp             HHHHHHGGGTEEEEEEEECC
T ss_pred             HHHHHHHHHCEEEEEEECCC
T ss_conf             99999736591799984387


Done!