Query gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 371 No_of_seqs 156 out of 2153 Neff 10.1 Searched_HMMs 23785 Date Tue May 31 20:48:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780833.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2odp_A Complement C2; C3/C5 co 99.9 4.4E-23 1.8E-27 156.4 16.7 187 165-360 6-211 (509) 2 1rrk_A Complement factor B; BB 99.9 5.9E-22 2.5E-26 149.6 14.6 183 168-362 1-205 (497) 3 1q0p_A Complement factor B; VO 99.9 9.2E-22 3.9E-26 148.4 13.3 190 164-365 11-222 (223) 4 1shu_X Anthrax toxin receptor 99.9 6.5E-20 2.7E-24 137.2 17.7 175 165-363 3-182 (182) 5 3ibs_A Conserved hypothetical 99.8 1.6E-19 6.8E-24 134.9 17.6 177 165-365 8-215 (218) 6 3hrz_D Complement factor B; se 99.8 2.8E-19 1.2E-23 133.4 17.0 190 164-365 239-450 (741) 7 1v7p_C Integrin alpha-2; snake 99.8 2.9E-19 1.2E-23 133.3 16.0 180 165-365 3-198 (200) 8 1pt6_A Integrin alpha-1; X-RAY 99.8 2.5E-19 1E-23 133.8 15.6 180 164-364 3-198 (213) 9 3gxb_A VON willebrand factor; 99.8 1.5E-18 6.2E-23 129.1 15.9 170 168-363 2-175 (184) 10 2b2x_A Integrin alpha-1; compu 99.8 6E-19 2.5E-23 131.4 13.7 181 164-365 18-214 (223) 11 1atz_A VON willebrand factor; 99.8 3E-18 1.3E-22 127.2 16.5 177 165-362 2-187 (189) 12 1n3y_A Integrin alpha-X; alpha 99.8 1.3E-18 5.5E-23 129.4 12.2 180 165-364 6-195 (198) 13 1mf7_A Integrin alpha M; cell 99.8 2.2E-18 9.4E-23 128.0 11.8 178 166-363 3-190 (194) 14 1ijb_A VON willebrand factor; 99.8 7.4E-17 3.1E-21 118.8 18.6 182 165-365 10-198 (202) 15 2x5n_A SPRPN10, 26S proteasome 99.7 3.9E-16 1.6E-20 114.5 14.8 152 170-337 4-156 (192) 16 2xgg_A Microneme protein 2; A/ 99.6 2E-14 8.5E-19 104.1 14.7 155 164-337 13-172 (178) 17 1mjn_A Integrin alpha-L; rossm 99.6 1E-14 4.2E-19 105.9 10.3 169 167-362 1-179 (179) 18 2x31_A Magnesium-chelatase 60 99.5 1.2E-16 5.2E-21 117.5 -1.9 170 167-357 4-185 (189) 19 2iue_A Pactolus I-domain; memb 99.5 4.7E-12 2E-16 89.8 16.5 163 166-345 1-193 (212) 20 3k6s_A Integrin alpha-X; cell 99.4 5.1E-13 2.2E-17 95.6 7.7 180 166-365 128-317 (1095) 21 2vdr_B Integrin beta-3; cell a 99.1 2E-08 8.4E-13 67.9 18.1 193 158-365 101-354 (461) 22 3fcs_B Integrin beta-3; beta p 99.1 1.6E-08 6.7E-13 68.5 15.8 192 158-363 101-356 (690) 23 2nvo_A RO sixty-related protei 98.8 1.1E-07 4.6E-12 63.4 13.6 137 166-328 360-501 (535) 24 3k6s_B Integrin beta-2; cell r 98.7 1.7E-08 7E-13 68.4 5.9 191 158-363 94-346 (687) 25 1jey_B KU80; double-strand DNA 98.7 7.9E-07 3.3E-11 58.3 13.9 146 170-328 9-170 (565) 26 1yvr_A RO autoantigen, 60-kDa 98.5 8.4E-06 3.6E-10 52.1 14.8 137 166-328 366-505 (538) 27 1jey_A KU70; double-strand DNA 96.7 0.025 1E-06 31.1 12.4 145 170-327 37-208 (609) 28 3efo_B SEC24 related gene fami 96.3 0.044 1.8E-06 29.6 18.9 166 166-348 175-402 (770) 29 3eh2_A Protein transport prote 94.7 0.17 7E-06 26.1 19.6 181 166-362 171-415 (766) 30 3eh1_A Protein transport prote 94.5 0.18 7.7E-06 25.9 18.7 174 167-363 159-398 (751) 31 1m2v_B SEC24, protein transpor 94.2 0.22 9.2E-06 25.4 18.4 175 167-363 302-549 (926) 32 1m2o_A SEC23, protein transpor 94.0 0.24 9.9E-06 25.2 15.5 170 168-361 121-390 (768) 33 1pcx_A Protein transport prote 91.8 0.5 2.1E-05 23.2 18.8 177 166-364 185-434 (810) 34 2nut_A Protein transport prote 90.2 0.71 3E-05 22.3 16.3 171 166-360 130-395 (769) 35 1uls_A Putative 3-oxoacyl-acyl 43.6 12 0.00051 14.9 5.4 51 307-360 161-221 (245) 36 1zk4_A R-specific alcohol dehy 42.4 13 0.00053 14.8 6.4 54 312-369 175-244 (251) 37 2k21_A Potassium voltage-gated 40.8 13 0.00056 14.6 2.7 39 7-45 41-79 (138) 38 2bgk_A Rhizome secoisolaricire 35.0 16 0.00069 14.1 7.0 60 307-369 180-258 (278) 39 2hqb_A Transcriptional activat 33.1 18 0.00074 13.9 5.0 22 349-370 271-293 (296) 40 3grp_A 3-oxoacyl-(acyl carrier 30.8 19 0.00081 13.7 6.9 60 307-369 186-259 (266) 41 2w8t_A SPT, serine palmitoyltr 27.8 13 0.00055 14.7 0.5 60 302-363 356-416 (427) 42 1nff_A Putative oxidoreductase 25.9 24 0.00099 13.1 6.9 50 307-360 166-221 (260) 43 3o38_A Short chain dehydrogena 23.2 27 0.0011 12.8 6.4 59 307-369 187-261 (266) 44 2fqx_A Membrane lipoprotein TM 23.2 27 0.0011 12.8 6.3 22 348-369 288-309 (318) 45 2o23_A HADH2 protein; HSD17B10 22.7 27 0.0011 12.8 8.8 51 307-360 183-244 (265) 46 3op4_A 3-oxoacyl-[acyl-carrier 22.4 28 0.0012 12.7 6.8 60 307-369 168-241 (248) 47 2b4q_A Rhamnolipids biosynthes 22.3 28 0.0012 12.7 5.5 60 307-369 195-270 (276) 48 2qip_A Protein of unknown func 22.2 28 0.0012 12.7 5.8 52 283-347 109-161 (165) 49 1xg5_A ARPG836; short chain de 22.2 28 0.0012 12.7 6.8 54 307-361 200-263 (279) 50 3imf_A Short chain dehydrogena 21.9 28 0.0012 12.7 6.5 59 308-369 170-246 (257) 51 3gvc_A Oxidoreductase, probabl 21.7 28 0.0012 12.6 7.6 20 307-326 188-207 (277) 52 2a4k_A 3-oxoacyl-[acyl carrier 21.0 29 0.0012 12.5 6.9 53 306-361 161-223 (263) 53 1srv_A Protein (groel (HSP60 c 20.9 30 0.0012 12.5 1.4 50 304-353 66-120 (145) 54 1k2w_A Sorbitol dehydrogenase; 20.6 30 0.0013 12.5 7.1 20 307-326 165-184 (256) No 1 >2odp_A Complement C2; C3/C5 convertase, complement serine protease, human complement system, glycoprotein, SP, VWFA, hydrolase; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Probab=99.91 E-value=4.4e-23 Score=156.40 Aligned_cols=187 Identities=19% Similarity=0.229 Sum_probs=145.6 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC----CHHHH Q ss_conf 34674069985276311566787214898999998750023355553110479878863674178166655----87899 Q gi|254780833|r 165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW----GVQHI 240 (371) Q Consensus 165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~----~~~~~ 240 (371) ....+|++|++|.|+||.. ++++.+++++..+++.+...+ ..+|++++.|++.+....+|+. +...+ T Consensus 6 ~~g~~DivfvlD~SgSm~~------~~~~~~k~~~~~~i~~~~~~~---~~~rv~lv~fs~~~~~~~~l~~~~~~~~~~~ 76 (509) T 2odp_A 6 RSGHLNLYLLLDASQSVSE------NDFLIFKESASLMVDRIFSFE---INVSVAIITFASEPKVLMSVLNDNSRDMTEV 76 (509) T ss_dssp SSSEEEEEEEEECSTTSCH------HHHHHHHHHHHHHHHHHHTTC---CCEEEEEEEESSSEEEEECTTSGGGGCHHHH T ss_pred CCCCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHCCCC---CCCEEEEEEECCEEEEEEECCCCCCCCHHHH T ss_conf 7898659999978699998------999999999999999614489---9748999998883579971788875579999 Q ss_pred HHHHHCCC-----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH---- Q ss_conf 99974015-----688745642378899998742110123467776661699998404588888897899999999---- Q gi|254780833|r 241 QEKINRLI-----FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNE---- 311 (371) Q Consensus 241 ~~~i~~l~-----~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~---- 311 (371) ...|+.+. .+|+|++..|+..+++.+..............++.+|+|||||||.+|.+.........+.+. T Consensus 77 ~~~i~~i~~~~~~~~g~T~~~~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~iillTDG~~n~g~~~~~~~~~~~~~~~~~ 156 (509) T 2odp_A 77 ISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNIN 156 (509) T ss_dssp HHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCC T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 99997173456778997779999999999999876430235566678862999994887566998489999987666665 Q ss_pred -HHHCCCEEEEEEECC-CCCHHHHHHHCC-C---CEEEEECCHHHHHHHHHHHHH Q ss_conf -997898799999418-642798998338-9---808982898999999999999 Q gi|254780833|r 312 -AKRRGAIVYAIGVQA-EAADQFLKNCAS-P---DRFYSVQNSRKLHDAFLRIGK 360 (371) Q Consensus 312 -~k~~gi~i~tIg~~~-~~~~~~l~~cAs-~---~~~y~~~~~~~L~~af~~I~~ 360 (371) +++++|.||+||+|. +.+...|+.+|| + .|+|.+++.++|.++|++|-. T Consensus 157 ~~~~~~v~i~~igvG~~~~d~~~L~~ias~~~~~~h~f~~~~~~~L~~~~~~i~~ 211 (509) T 2odp_A 157 QKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLD 211 (509) T ss_dssp STTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHEE T ss_pred HHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCC T ss_conf 6630696599999588645899999986599997159994888899999974044 No 2 >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Probab=99.88 E-value=5.9e-22 Score=149.60 Aligned_cols=183 Identities=19% Similarity=0.226 Sum_probs=139.5 Q ss_pred CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCC----CCHHHHHHH Q ss_conf 7406998527631156678721489899999875002335555311047987886367417816665----587899999 Q gi|254780833|r 168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLA----WGVQHIQEK 243 (371) Q Consensus 168 ~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt----~~~~~~~~~ 243 (371) .+|++|++|.|+||+. ++++.+++++..+++.+... ...+|++++.|++.+....+++ .+...++.. T Consensus 1 ~lDivfvlD~S~Sm~~------~~~~~~k~~~~~~i~~~~~~---~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~ 71 (497) T 1rrk_A 1 SMNIYLVLDGSDSIGA------SNFTGAKKVLVNLIEKVASY---GVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQ 71 (497) T ss_dssp CEEEEEEEECSTTTCH------HHHHHHHHHHHHHHHHHHHT---TCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHH T ss_pred CCCEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCCCC---CCCEEEEEEEECCEEEEEECCCCCCCCCHHHHHHH T ss_conf 9458999957799986------99999999999999853658---99609999998781789973798775689999999 Q ss_pred HHCCC-----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH--------- Q ss_conf 74015-----6887456423788999987421101234677766616999984045888888978999999--------- Q gi|254780833|r 244 INRLI-----FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYC--------- 309 (371) Q Consensus 244 i~~l~-----~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c--------- 309 (371) |+.+. .+++|++..|+.++.+.+...... ......+.+|+|||||||.+|.+.........+- T Consensus 72 i~~i~~~~~~~~g~T~~~~al~~a~~~~~~~~~~---~~~~~~~~~~viillTDG~~n~~~~p~~~~~~i~~~~~~~~~~ 148 (497) T 1rrk_A 72 LNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDV---PPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDR 148 (497) T ss_dssp HHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC---------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC---CCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9608566886888757999999999998652014---7555567875999997976777898789999999878777777 Q ss_pred HHHHHCCCEEEEEEECCCCCHHHHHHHCC-C-C--EEEEECCHHHHHHHHHHHHHHH Q ss_conf 99997898799999418642798998338-9-8--0898289899999999999964 Q gi|254780833|r 310 NEAKRRGAIVYAIGVQAEAADQFLKNCAS-P-D--RFYSVQNSRKLHDAFLRIGKEM 362 (371) Q Consensus 310 ~~~k~~gi~i~tIg~~~~~~~~~l~~cAs-~-~--~~y~~~~~~~L~~af~~I~~~i 362 (371) ..++++||.||+||+|.+.+...|+.+|+ + + |||.+++.++|.++|..+.++- T Consensus 149 ~~~~~~gi~i~~vgiG~~~d~~~L~~iAs~~~~~~~~f~~~d~~~L~~~~~~~~~~~ 205 (497) T 1rrk_A 149 KNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFYQMIDES 205 (497) T ss_dssp -CCCGGGEEEEEEECSSSCCHHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHHSCGG T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCC T ss_conf 668767907999736886799999987517898504999499999999875302466 No 3 >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Probab=99.88 E-value=9.2e-22 Score=148.41 Aligned_cols=190 Identities=18% Similarity=0.227 Sum_probs=143.9 Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC----CHHH Q ss_conf 134674069985276311566787214898999998750023355553110479878863674178166655----8789 Q gi|254780833|r 164 KSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW----GVQH 239 (371) Q Consensus 164 ~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~----~~~~ 239 (371) +...++|++|++|.||||.. ++++.+++++..+++.+... ....|++++.|++.+....|++. +... T Consensus 11 ~~~~~~DivfvlD~SgSm~~------~~~~~~k~~~~~li~~~~~~---~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~~ 81 (223) T 1q0p_A 11 DPSGSMNIYLVLDGSDSIGA------SNFTGAKKSLVNLIEKVASY---GVKPRYGLVTYATYPKIWVKVSEADSSNADW 81 (223) T ss_dssp ----CEEEEEEEECSTTTCH------HHHHHHHHHHHHHHHHHHTT---TCCCEEEEEEESSSEEEEECTTSGGGGCHHH T ss_pred CCCCCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHCCC---CCCCEEEEEEECCCEEEEECCCCCCHHHHHH T ss_conf 89898618999948888882------88999999999999973368---8775899999759378997078630245678 Q ss_pred HHHHHHCCC-----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH---- Q ss_conf 999974015-----68874564237889999874211012346777666169999840458888889789999999---- Q gi|254780833|r 240 IQEKINRLI-----FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCN---- 310 (371) Q Consensus 240 ~~~~i~~l~-----~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~---- 310 (371) +...++.+. .+|+|++..++..+...+..... ..........|++||+|||.++.+.........+.+ T Consensus 82 ~~~~~~~i~~~~~~~~g~T~~~~Al~~a~~~~~~~~~---~~~~~~~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~~~~ 158 (223) T 1q0p_A 82 VTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDD---VPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYI 158 (223) T ss_dssp HHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTS---SCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 9999985454216688897599999999999864011---4666677774289997688767789828999999863346 Q ss_pred -----HHHHCCCEEEEEEECCCCCHHHHHHHCCC----CEEEEECCHHHHHHHHHHHHHHHHHE Q ss_conf -----99978987999994186427989983389----80898289899999999999964000 Q gi|254780833|r 311 -----EAKRRGAIVYAIGVQAEAADQFLKNCASP----DRFYSVQNSRKLHDAFLRIGKEMVKQ 365 (371) Q Consensus 311 -----~~k~~gi~i~tIg~~~~~~~~~l~~cAs~----~~~y~~~~~~~L~~af~~I~~~i~~~ 365 (371) .++..|+.+|+||++.+.+...|+.+|+. .+||.+++.++|.++|.+|..+...+ T Consensus 159 ~~~~~~~~~~g~~i~~igvg~~~~~~~L~~iAs~~~~~~~~~~~~d~~~L~~~~~~i~~e~~s~ 222 (223) T 1q0p_A 159 GKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSL 222 (223) T ss_dssp SCBTTBCCGGGEEEEEEECSSCCCHHHHHHHSCCCTTCCCEEETTC-----------------C T ss_pred HHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCC T ss_conf 7999998767965999736875699999999749899747999089999999999999861478 No 4 >1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Probab=99.85 E-value=6.5e-20 Score=137.25 Aligned_cols=175 Identities=21% Similarity=0.231 Sum_probs=133.9 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHH Q ss_conf 34674069985276311566787214898999998750023355553110479878863674178166655878999997 Q gi|254780833|r 165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKI 244 (371) Q Consensus 165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i 244 (371) +..++|++|++|.|+||...| ...++.+..++..+. ....|++++.|++.+....|++++...++..+ T Consensus 3 C~~~~DivfliD~S~Sm~~~~-------~~~k~~~~~~~~~~~-----~~~~rvglv~fs~~~~~~~~~~~~~~~~~~~l 70 (182) T 1shu_X 3 CRRAFDLYFVLDKSGSVANNW-------IEIYNFVQQLAERFV-----SPEMRLSFIVFSSQATIILPLTGDRGKISKGL 70 (182) T ss_dssp CBSCEEEEEEEECSGGGGGGH-------HHHHHHHHHHHHHCC-----CTTEEEEEEEESSSEEEEEEEECCHHHHHHHH T ss_pred CCCCEEEEEEEECCCCCCCCH-------HHHHHHHHHHHHHHC-----CCCCEEEEEEECCCCEEECCCCCCHHHHHHHH T ss_conf 799746999993897843279-------999999999999735-----89987999996045415246435578899988 Q ss_pred H---CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 4---0156887456423788999987421101234677766616999984045888888978999999999978987999 Q gi|254780833|r 245 N---RLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYA 321 (371) Q Consensus 245 ~---~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~t 321 (371) . .+.+.|+|++..++..+...+.... +....|++|+||||..+.+. +......++.+|+.||.||+ T Consensus 71 ~~~~~~~~~g~T~~~~al~~~~~~~~~~~---------~~~~~~~ivllTDG~~~~~~--~~~~~~~a~~l~~~gv~v~~ 139 (182) T 1shu_X 71 EDLKRVSPVGETYIHEGLKLANEQIQKAG---------GLKTSSIIIALTDGKLDGLV--PSYAEKEAKISRSLGASVYC 139 (182) T ss_dssp HHHHTCCCCSCCCHHHHHHHHHHHHHHHT---------GGGSCEEEEEEECCCCCTTH--HHHHHHHHHHHHHTTCEEEE T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHC---------CCCCCEEEEEEECCCCCCCC--CHHHHHHHHHHHHCCCEEEE T ss_conf 87740679998469999999999987503---------67885599999728878886--48999999999978999999 Q ss_pred EEECCCCCHHHHHHHCC-CCEEEEEC-CHHHHHHHHHHHHHHHH Q ss_conf 99418642798998338-98089828-98999999999999640 Q gi|254780833|r 322 IGVQAEAADQFLKNCAS-PDRFYSVQ-NSRKLHDAFLRIGKEMV 363 (371) Q Consensus 322 Ig~~~~~~~~~l~~cAs-~~~~y~~~-~~~~L~~af~~I~~~i~ 363 (371) ||++ +.+...|+.+|+ +++.|.+. +.++|.+.+++|.+++. T Consensus 140 Vgig-~~~~~~L~~ia~~~~~~~~~~~~~~~L~~~~~~i~~~~C 182 (182) T 1shu_X 140 VGVL-DFEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSC 182 (182) T ss_dssp EECS-SCCHHHHHHHSSSGGGEEESSSTTHHHHHHHHHHHHTBC T ss_pred EEEC-CCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHC T ss_conf 9847-548999999858999669934999999999999986239 No 5 >3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for structural genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Probab=99.85 E-value=1.6e-19 Score=134.89 Aligned_cols=177 Identities=20% Similarity=0.270 Sum_probs=136.4 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHH Q ss_conf 34674069985276311566787214898999998750023355553110479878863674178166655878999997 Q gi|254780833|r 165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKI 244 (371) Q Consensus 165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~~~~~~i 244 (371) .+.++|++|++|.||||...... ..|++.++..+..+++.... .|++++.|...+....|++.+.......+ T Consensus 8 ~r~g~divlvvD~SgSM~~~D~~-~~R~~~ak~~~~~~l~~~~~-------~rvglv~F~~~~~~~~~~t~~~~~~~~~~ 79 (218) T 3ibs_A 8 KRKGVEVIIALDISNSMLAQDVQ-PSRLEKAKRLISRLVDELDN-------DKVGMIVFAGDAFTQLPITSDYISAKMFL 79 (218) T ss_dssp --CCCEEEEEEECSGGGGCCSSS-SCHHHHHHHHHHHHHHTCSS-------CEEEEEEESSSEEEEEEEESCHHHHHHHH T ss_pred CCCCCEEEEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCC-------CEEEEEEECCCCCCCCCCCHHHHHHHHHH T ss_conf 43795899999798577887778-48999999999999950999-------76999997684420112430677888888 Q ss_pred HCCC----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEE Q ss_conf 4015----688745642378899998742110123467776661699998404588888897899999999997898799 Q gi|254780833|r 245 NRLI----FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVY 320 (371) Q Consensus 245 ~~l~----~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~ 320 (371) +.+. +.++|++..++.++...|. ..+...|+|||+|||.++.+. .......++..++.+| T Consensus 80 ~~~~~~~~~~~gT~~~~al~~a~~~l~-----------~~~~~~~~iillSDG~~~~~~-----~~~~~~~~~~~~~~~~ 143 (218) T 3ibs_A 80 ESISPSLISKQGTAIGEAINLATRSFT-----------PQEGVGRAIIVITDGENHEGG-----AVEAAKAAAEKGIQVS 143 (218) T ss_dssp HTCCGGGCCSCSCCHHHHHHHHHTTSC-----------SCSSCCEEEEEEECCTTCCSC-----HHHHHHHHHTTTEEEE T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHH-----------HHCCCCCEEEEECCCCCCCCC-----HHHHHHHHHHCCCEEE T ss_conf 752214566899637899999998741-----------202677679996589988761-----3899999987698799 Q ss_pred EEEECCCC-------------------------CHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHHHHHE Q ss_conf 99941864-------------------------279899833--8980898289899999999999964000 Q gi|254780833|r 321 AIGVQAEA-------------------------ADQFLKNCA--SPDRFYSVQNSRKLHDAFLRIGKEMVKQ 365 (371) Q Consensus 321 tIg~~~~~-------------------------~~~~l~~cA--s~~~~y~~~~~~~L~~af~~I~~~i~~~ 365 (371) +++++.+. +...|+.+| ++|.||++++.+++.++|.+.-+++.+. T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~iA~~tgG~y~~~~~~~~~~~~i~~~I~~l~~~ 215 (218) T 3ibs_A 144 VLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQEISKMAKS 215 (218) T ss_dssp EEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHHHHHHHHHC T ss_pred EEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCC T ss_conf 998626878621122677522146776243326999999999964918999528799999999999754243 No 6 >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A* Probab=99.84 E-value=2.8e-19 Score=133.39 Aligned_cols=190 Identities=18% Similarity=0.218 Sum_probs=144.2 Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC----CHHH Q ss_conf 134674069985276311566787214898999998750023355553110479878863674178166655----8789 Q gi|254780833|r 164 KSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW----GVQH 239 (371) Q Consensus 164 ~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~----~~~~ 239 (371) ....++|++|++|.|+||.. ++.+.+++++..+++.+...+ ...|++++.|++......+|+. ++.. T Consensus 239 ~~~~~~Dl~f~lD~S~s~~~------~~f~~~k~f~~~lv~~~~~~~---~~~rv~vi~ys~~~~~~~~l~~~~~~~~~~ 309 (741) T 3hrz_D 239 DPSGSMNIYLVLDGSGSIGA------SDFTGAKKCLVNLIEKVASYG---VKPRYGLVTYATYPKIWVKVSEADSSNADW 309 (741) T ss_dssp CTTCEEEEEEEEECSTTTCH------HHHHHHHHHHHHHHHHHHHTT---CCCEEEEEEESSSEEEEECTTSGGGGCHHH T ss_pred CCCCCCEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCCCCC---CCCEEEEEEECCCCEEEEECCCCCCCCHHH T ss_conf 56888138999965665487------789999999999998634688---874699999647715888516666789999 Q ss_pred HHHHHHCCC-----CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH---- Q ss_conf 999974015-----68874564237889999874211012346777666169999840458888889789999999---- Q gi|254780833|r 240 IQEKINRLI-----FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCN---- 310 (371) Q Consensus 240 ~~~~i~~l~-----~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~---- 310 (371) +...|+.+. .+++|++..|+.++.+.+..... .......+.+|++||+|||..+.+.........+.+ T Consensus 310 ~~~~i~~i~~~~~~~~ggT~t~~Al~~~~~~~~~~~~---~~~~~~~~~~~vlillTDG~s~~g~~p~~~~~~~~~~~~~ 386 (741) T 3hrz_D 310 VTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDD---VPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYI 386 (741) T ss_dssp HHHHHTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC-----CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTC T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 9999971776667788875899999999986421101---5755567898599998998655788832444432212223 Q ss_pred -----HHHHCCCEEEEEEECCCCCHHHHHHHCC-C---CEEEEECCHHHHHHHHHHHHHHHHHE Q ss_conf -----9997898799999418642798998338-9---80898289899999999999964000 Q gi|254780833|r 311 -----EAKRRGAIVYAIGVQAEAADQFLKNCAS-P---DRFYSVQNSRKLHDAFLRIGKEMVKQ 365 (371) Q Consensus 311 -----~~k~~gi~i~tIg~~~~~~~~~l~~cAs-~---~~~y~~~~~~~L~~af~~I~~~i~~~ 365 (371) .++++||.||+||+|.+.+...|+.+|+ + .|+|.+++.++|.+.+.+|....... T Consensus 387 ~~~~~~~~~~gi~i~~igvg~~~~~~~L~~iAs~~~~~~~v~~~~d~~~L~~~~~~~~~~~~~~ 450 (741) T 3hrz_D 387 GKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSL 450 (741) T ss_dssp SSCTTCCCGGGEEEEEEECSSSCCHHHHHHHSCCCTTCCCEECBSSHHHHHHHHHHHHHHHSCT T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCCCCC T ss_conf 4667778878939999986775899999999708888623999689999888874430023234 No 7 >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhesion, glycoprotein, toxin/cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Probab=99.83 E-value=2.9e-19 Score=133.31 Aligned_cols=180 Identities=17% Similarity=0.214 Sum_probs=137.4 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCC--CCHHHHHH Q ss_conf 3467406998527631156678721489899999875002335555311047987886367417816665--58789999 Q gi|254780833|r 165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLA--WGVQHIQE 242 (371) Q Consensus 165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt--~~~~~~~~ 242 (371) ++..+|++|++|.|+||.. .+..++.+..+++.+... ...+|++++.|++.+....+|. .+..++.. T Consensus 3 ~p~~~DivfvlD~S~S~~~--------~~~~k~f~~~~i~~~~i~---~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~ 71 (200) T 1v7p_C 3 SPSLIDVVVVCDESNSIYP--------WDAVKNFLEKFVQGLDIG---PTKTQVGLIQYANNPRVVFNLNTYKTKEEMIV 71 (200) T ss_dssp ---CEEEEEEEECCTTCCC--------HHHHHHHHHHHHHTSCBS---TTSEEEEEEEESSSEEEEECTTTCSSHHHHHH T ss_pred CCCCEEEEEEEECCCCCCC--------HHHHHHHHHHHHHHHCCC---CCCEEEEEEEECCCEEEEECCCCHHHHHHHHH T ss_conf 9871669999979898867--------999999999999971558---87608999997595467406642115899999 Q ss_pred HHHCCCC--CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEE Q ss_conf 9740156--88745642378899998742110123467776661699998404588888897899999999997898799 Q gi|254780833|r 243 KINRLIF--GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVY 320 (371) Q Consensus 243 ~i~~l~~--~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~ 320 (371) .|+.+.. +++|++..|+.++.+.++.... ...++.+|++||+|||.++++. ........+|+.||++| T Consensus 72 ~i~~i~~~~g~~t~~~~AL~~a~~~~f~~~~------~~r~~~~kvivllTDG~~~d~~----~~~~~~~~~~~~gi~i~ 141 (200) T 1v7p_C 72 ATSQTSQYGGDLTNTFGAIQYARKYAYSAAS------GGRRSATKVMVVVTDGESHDGS----MLKAVIDQCNHDNILRF 141 (200) T ss_dssp HHHHCCCCCCSCCCHHHHHHHHHHHTTSGGG------TCCTTSEEEEEEEESSCCSCGG----GHHHHHHHHHHTTEEEE T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC------CCCCCCCEEEEEEECCCCCCCC----CHHHHHHHHHCCCEEEE T ss_conf 9876306799964289999999997337355------8888885559998279888861----13999998764890999 Q ss_pred EEEECCCCC---------HHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHHE Q ss_conf 999418642---------7989983389---80898289899999999999964000 Q gi|254780833|r 321 AIGVQAEAA---------DQFLKNCASP---DRFYSVQNSRKLHDAFLRIGKEMVKQ 365 (371) Q Consensus 321 tIg~~~~~~---------~~~l~~cAs~---~~~y~~~~~~~L~~af~~I~~~i~~~ 365 (371) +||++...+ ...|+.+||. .|+|.+++..+|.+.+++|.++|.+. T Consensus 142 ~Igvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~d~~~L~~~~~~l~~~ic~i 198 (200) T 1v7p_C 142 GIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIFSI 198 (200) T ss_dssp EEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHHTC T ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCC T ss_conf 999777445565443125999999866998613999389999999999999772056 No 8 >1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Probab=99.83 E-value=2.5e-19 Score=133.75 Aligned_cols=180 Identities=17% Similarity=0.282 Sum_probs=135.3 Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHH Q ss_conf 134674069985276311566787214898999998750023355553110479878863674178166655--878999 Q gi|254780833|r 164 KSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQ 241 (371) Q Consensus 164 ~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~ 241 (371) ++..++|++|++|.|+||.. .+..++++..+++.+... ....|++++.|++.+....+|+. +...+. T Consensus 3 eC~~~~DivfvlD~S~S~~~--------f~~~k~f~~~~i~~~~~~---~~~~rv~vv~y~~~~~~~~~l~~~~~~~~~~ 71 (213) T 1pt6_A 3 ECSTQLDIVIVLDGSNSIYP--------WDSVTAFLNDLLKRMDIG---PKQTQVGIVQYGENVTHEFNLNKYSSTEEVL 71 (213) T ss_dssp ----CEEEEEEEECCTTCCC--------HHHHHHHHHHHHTTSCBS---TTSBEEEEEEESSSEEEEECTTTCSSHHHHH T ss_pred CCCCCEEEEEEEECCCCCCC--------HHHHHHHHHHHHHHHCCC---CCCCEEEEEEEEEEEEEEECCCCCCCHHHHH T ss_conf 79984489999979888878--------899999999999972448---8773788999742368997765567799999 Q ss_pred HHHHCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEE Q ss_conf 99740156887--4564237889999874211012346777666169999840458888889789999999999789879 Q gi|254780833|r 242 EKINRLIFGST--TKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIV 319 (371) Q Consensus 242 ~~i~~l~~~g~--T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i 319 (371) ..++.+...++ |+...++.++...+..... ...++.+|++||+|||..++. .......+.+|+.||+| T Consensus 72 ~~i~~~~~~~g~~t~~~~al~~a~~~~~~~~~------g~R~~~~k~villTDG~~~d~----~~~~~~~~~lk~~gi~v 141 (213) T 1pt6_A 72 VAAKKIVQRGGRQTMTALGTDTARKEAFTEAR------GARRGVKKVMVIVTDGESHDN----HRLKKVIQDCEDENIQR 141 (213) T ss_dssp HHHHTCCCCCCSSCCHHHHHHHHHHTTTSGGG------TCCTTCEEEEEEEESSCCSCS----HHHHHHHHHHHHTTEEE T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC------CCCCCCEEEEEEEECCCCCCC----HHHHHHHHHHHHCCCEE T ss_conf 99877775078410021234344432013224------787786689999846987884----15999999999889999 Q ss_pred EEEEECCCCCH---------HHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHH Q ss_conf 99994186427---------989983389---8089828989999999999996400 Q gi|254780833|r 320 YAIGVQAEAAD---------QFLKNCASP---DRFYSVQNSRKLHDAFLRIGKEMVK 364 (371) Q Consensus 320 ~tIg~~~~~~~---------~~l~~cAs~---~~~y~~~~~~~L~~af~~I~~~i~~ 364 (371) |+||++...+. +.|+.+||. .|+|.+++..+|.+.++.|.++|.. T Consensus 142 ~~Vgvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~~~~~L~~i~~~l~~~ic~ 198 (213) T 1pt6_A 142 FSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFA 198 (213) T ss_dssp EEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHC T ss_conf 999974765545433324699999986699854089808999999999999999724 No 9 >3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens} Probab=99.81 E-value=1.5e-18 Score=129.07 Aligned_cols=170 Identities=15% Similarity=0.193 Sum_probs=134.5 Q ss_pred CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHHHHH Q ss_conf 74069985276311566787214898999998750023355553110479878863674178166655--8789999974 Q gi|254780833|r 168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQEKIN 245 (371) Q Consensus 168 ~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~~i~ 245 (371) .+|++|++|.|+||+. ...+..++.+..+++.+... ...+|++++.|++.+....+|.. +...+...|+ T Consensus 2 vlDivfllD~S~Sv~~------~~f~~~k~fi~~~i~~l~i~---~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~~~~i~ 72 (184) T 3gxb_A 2 VLDVAFVLEGSDKIGE------ADFNRSKEFMEEVIQRMDVG---QDSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRVR 72 (184) T ss_dssp CEEEEEEEECSTTTCH------HHHHHHHHHHHHHHHTSCBC---TTSEEEEEEEESSSEEEEECTTSCCCHHHHHHHHH T ss_pred CEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCCCC---CCCEEEEEEEECCCEEEEEECCCCCCHHHHHHHHH T ss_conf 1689999979899897------99999999999999963659---87349999885471789984687677799999863 Q ss_pred CCCCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 01568--8745642378899998742110123467776661699998404588888897899999999997898799999 Q gi|254780833|r 246 RLIFG--STTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIG 323 (371) Q Consensus 246 ~l~~~--g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg 323 (371) .+... +.|++..|++++.+.++... ....++.+|++|++|||.+++.-.. +.+||+||+|| T Consensus 73 ~i~~~~g~~t~~~~AL~~~~~~~f~~~------~~~R~~~~kvivllTdG~s~d~~~~-----------~~~gi~i~~vg 135 (184) T 3gxb_A 73 EIRYQGGNRTNTGLALRYLSDHSFLVS------QGDREQAPNLVYMVTGNPASDEIKR-----------LPGDIQVVPIG 135 (184) T ss_dssp TCCCCCCSCCCHHHHHHHHHHTGGGSC------CGGGGGSCEEEEEEECSCCSSCCCC-----------CCTTEEEEEEE T ss_pred HHHCCCCCCCCHHHHHHHHHHHHCCCC------CCCCCCCCEEEEEECCCCCCHHHHH-----------HHCCCEEEEEE T ss_conf 001137765417999999999852634------4899999669999659997068999-----------84899899998 Q ss_pred ECCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH Q ss_conf 4186427989983389808982898999999999999640 Q gi|254780833|r 324 VQAEAADQFLKNCASPDRFYSVQNSRKLHDAFLRIGKEMV 363 (371) Q Consensus 324 ~~~~~~~~~l~~cAs~~~~y~~~~~~~L~~af~~I~~~i~ 363 (371) +|.+.+...|+.+|+++++|.+++.++|.+.+.+|..++. T Consensus 136 vG~~~~~~~L~~ia~~~~~~~~~~~~~L~~~~~~l~~~~c 175 (184) T 3gxb_A 136 VGPNANVQELERIGWPNAPILIQDFETLPREAPDLVLQRC 175 (184) T ss_dssp ESTTSCHHHHHHHHTTSCCEEESCTTTHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHC T ss_conf 4674799999987399977994899999999999997546 No 10 >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Probab=99.81 E-value=6e-19 Score=131.41 Aligned_cols=181 Identities=17% Similarity=0.281 Sum_probs=136.6 Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHH Q ss_conf 134674069985276311566787214898999998750023355553110479878863674178166655--878999 Q gi|254780833|r 164 KSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQ 241 (371) Q Consensus 164 ~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~ 241 (371) .+..++|++|++|.|+||.. .+..++.+..+++.+... ...+|++++.|++.+....+|+. +...+. T Consensus 18 ~c~~~~DivfvlD~S~sv~~--------~~~~k~fv~~li~~~~i~---~~~~rv~lv~fs~~~~~~~~l~~~~~~~~~~ 86 (223) T 2b2x_A 18 ECSTQLDIVIVLDGSNSIYP--------WESVIAFLNDLLKRMDIG---PKQTQVGIVQYGENVTHEFNLNKYSSTEEVL 86 (223) T ss_dssp ----CEEEEEEEECSTTCCC--------HHHHHHHHHHHHTTSCCS---TTSCCEEEEEESSSEEEEECTTTCCSHHHHH T ss_pred CCCCCEEEEEEEECCCCCCC--------HHHHHHHHHHHHHHCCCC---CCCCEEEEEEEECCEEEECCCCCCCCHHHHH T ss_conf 89986569999979887436--------999999999999971558---8860898998604267860545557689999 Q ss_pred HHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEE Q ss_conf 9974015688--74564237889999874211012346777666169999840458888889789999999999789879 Q gi|254780833|r 242 EKINRLIFGS--TTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIV 319 (371) Q Consensus 242 ~~i~~l~~~g--~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i 319 (371) ..++.+...+ +|++..++.++.+.+..... ...++..|++||+|||..++. .........+|+.||+| T Consensus 87 ~~i~~i~~~~~~~t~~~~aL~~~~~~~~~~~~------g~R~~~~kvlillTDG~~~d~----~~~~~~a~~lk~~gi~v 156 (223) T 2b2x_A 87 VAANKIVQRGGRQTMTALGIDTARKEAFTEAR------GARRGVKKVMVIVTDGESHDN----YRLKQVIQDCEDENIQR 156 (223) T ss_dssp HHHTTCCCCCCSSCCHHHHHHHHHHTTSSGGG------TCCTTSEEEEEEEESSCCTTG----GGHHHHHHHHHTTTEEE T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC------CCCCCCCEEEEEEECCCCCCC----HHHHHHHHHHHHCCCEE T ss_conf 99874312477332217778888887503335------888787257999826987883----12999999998759989 Q ss_pred EEEEECCCCCH---------HHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHHE Q ss_conf 99994186427---------989983389---80898289899999999999964000 Q gi|254780833|r 320 YAIGVQAEAAD---------QFLKNCASP---DRFYSVQNSRKLHDAFLRIGKEMVKQ 365 (371) Q Consensus 320 ~tIg~~~~~~~---------~~l~~cAs~---~~~y~~~~~~~L~~af~~I~~~i~~~ 365 (371) |+||++.+.+. ..|+.+||. .|+|.+++..+|.+.+++|.++|... T Consensus 157 ~~Igvg~~~~~~~~~~~~~~~eL~~IAs~p~~~~~f~~~d~~~L~~i~~~l~~~ic~~ 214 (223) T 2b2x_A 157 FSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERIFAL 214 (223) T ss_dssp EEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHHHHTTTC-- T ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHCCC T ss_conf 9999846666443244236999999866998551898189999999999999886431 No 11 >1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 2adf_A 1fe8_A 1ao3_A Probab=99.80 E-value=3e-18 Score=127.18 Aligned_cols=177 Identities=12% Similarity=0.131 Sum_probs=134.4 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCC--CCHHHHHH Q ss_conf 3467406998527631156678721489899999875002335555311047987886367417816665--58789999 Q gi|254780833|r 165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLA--WGVQHIQE 242 (371) Q Consensus 165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt--~~~~~~~~ 242 (371) +..++|++|++|.|+||.. ..++..+.++..+++.+... ....|++++.|++......++. .+.+++.. T Consensus 2 C~~~~DivfllD~S~s~~~------~~~~~~k~fv~~~i~~~~i~---~~~~rv~vv~y~~~~~~~~~l~~~~~~~~~~~ 72 (189) T 1atz_A 2 CSQPLDVILLLDGSSSFPA------SYFDEMKSFAKAFISKANIG---PRLTQVSVLQYGSITTIDVPWNVVPEKAHLLS 72 (189) T ss_dssp --CCEEEEEEEECSSSSCH------HHHHHHHHHHHHHHHHSCBS---TTSEEEEEEEESSSEEEEECTTCCCCHHHHHH T ss_pred CCCCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCCCC---CCCCEEEEEEEEEEEEEEEEEECCCCHHHHHH T ss_conf 7985789999948799886------89999999999999970758---88748999997501389998523675899999 Q ss_pred HHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 974015-6887456423788999987421101234677766616999984045888888978999999999978987999 Q gi|254780833|r 243 KINRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYA 321 (371) Q Consensus 243 ~i~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~t 321 (371) .|+.+. .+|+|++..++.++.+.+..... ...++..|++|++|||..++. .....+.+|+.||+||+ T Consensus 73 ~i~~l~~~gg~t~~~~al~~a~~~~~~~~~------g~R~~a~k~vvlltdg~~~~~------~~~~~~~lk~~~i~v~~ 140 (189) T 1atz_A 73 LVDVMQREGGPSQIGDALGFAVRYLTSEMH------GARPGASKAVVILVTDVSVDS------VDAAADAARSNRVTVFP 140 (189) T ss_dssp HHHTCCCCCCCCCHHHHHHHHHHHHHSCCT------TCCTTSEEEEEEEECSCCSSC------CHHHHHHHHHTTEEEEE T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHC------CCCCCCEEEEEEEECCCCCCC------HHHHHHHHHHCCCEEEE T ss_conf 999887437787632578999999740102------799988058999925998651------89999999988999999 Q ss_pred EEECCCCCHHHHHHHCC---CCEEEEECCHHHHH---HHHHHHHHHH Q ss_conf 99418642798998338---98089828989999---9999999964 Q gi|254780833|r 322 IGVQAEAADQFLKNCAS---PDRFYSVQNSRKLH---DAFLRIGKEM 362 (371) Q Consensus 322 Ig~~~~~~~~~l~~cAs---~~~~y~~~~~~~L~---~af~~I~~~i 362 (371) ||+|...+...|+.+|+ ..+.|.+.+.++|. +..+.|.++| T Consensus 141 igig~~~~~~~l~~ia~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~i 187 (189) T 1atz_A 141 IGIGDRYDAAQLRILAGPAGDSNVVKLQRIEDLPTMVTLGNSFLHKL 187 (189) T ss_dssp EEESSSSCHHHHHHHTGGGGGGGCEEESSTTHHHHHHHSCSHHHHHC T ss_pred EEECCCCCHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHH T ss_conf 99588699999999857888775899468766888999999998844 No 12 >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Probab=99.79 E-value=1.3e-18 Score=129.40 Aligned_cols=180 Identities=19% Similarity=0.276 Sum_probs=135.7 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHH Q ss_conf 34674069985276311566787214898999998750023355553110479878863674178166655--8789999 Q gi|254780833|r 165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQE 242 (371) Q Consensus 165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~ 242 (371) .+.+.|++|++|.|+||.. +.....++++..+++.+.. ...|++++.|...+....+|+. +..++.. T Consensus 6 ~~~~~DivfvlD~S~Sm~~------~~~~~~k~~i~~li~~l~~-----~~~rv~vv~f~~~~~~~~~l~~~~~~~~~~~ 74 (198) T 1n3y_A 6 SRQEQDIVFLIDGSGSISS------RNFATMMNFVRAVISQFQR-----PSTQFSLMQFSNKFQTHFTFEEFRRSSNPLS 74 (198) T ss_dssp --CCEEEEEEEECCTTSCH------HHHHHHHHHHHHHHTTSCT-----TTEEEEEEEESSSEEEEECHHHHHHCSSGGG T ss_pred CCCCCCEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHCC-----CCCEEEEEEEECCEEEECCCCCCCCHHHHHH T ss_conf 6888648999968799887------9999999999999997089-----9858999998343234126666433899999 Q ss_pred HHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 974015-6887456423788999987421101234677766616999984045888888978999999999978987999 Q gi|254780833|r 243 KINRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYA 321 (371) Q Consensus 243 ~i~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~t 321 (371) .++.+. .+++|++..++.++.+.+.... ....+..+|++||+|||.+++..... ...++.+|+.||+||+ T Consensus 75 ~i~~~~~~~~~t~~~~al~~a~~~~~~~~------~~~r~~~~kvivlltDG~~~~~~~~~---~~~~~~~~~~gv~i~~ 145 (198) T 1n3y_A 75 LLASVHQLQGFTYTATAIQNVVHRLFHAS------YGARRDAAKILIVITDGKKEGDSLDY---KDVIPMADAAGIIRYA 145 (198) T ss_dssp GGTTCCCCCSCBCHHHHHHHHHTTTTSGG------GTCCTTSEEEEEEEESSCCBSCSSCH---HHHHHHHHHTTCEEEE T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHH------CCCCCCCCCEEEEEECCCCCCCCCCH---HHHHHHHHHCCCEEEE T ss_conf 88765403698738899999999984232------05778764259999358988872059---9999999978988999 Q ss_pred EEECCC----CCHHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHHH Q ss_conf 994186----427989983389---8089828989999999999996400 Q gi|254780833|r 322 IGVQAE----AADQFLKNCASP---DRFYSVQNSRKLHDAFLRIGKEMVK 364 (371) Q Consensus 322 Ig~~~~----~~~~~l~~cAs~---~~~y~~~~~~~L~~af~~I~~~i~~ 364 (371) ||++.. .+...|+.+|+. .++|.+++.++|.+.++.|.++|.. T Consensus 146 Ig~g~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~i~~~l~~~ic~ 195 (198) T 1n3y_A 146 IGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA 195 (198) T ss_dssp EEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGGGGGGHHHHHHHHHT T ss_pred EEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCC T ss_conf 99787667753499999986699865199929999999999999987316 No 13 >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1 Probab=99.78 E-value=2.2e-18 Score=127.98 Aligned_cols=178 Identities=19% Similarity=0.275 Sum_probs=134.3 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHHH Q ss_conf 4674069985276311566787214898999998750023355553110479878863674178166655--87899999 Q gi|254780833|r 166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQEK 243 (371) Q Consensus 166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~~ 243 (371) ..+.|++|++|.|+||... ....+++.+..+++.+.. ..+|++++.|++.+....+|+. +..++.+. T Consensus 3 ~~~~DivfvlD~S~s~~~~------~f~~~k~~i~~~i~~l~~-----~~~rvgvv~f~~~~~~~~~l~~~~~~~~~~~~ 71 (194) T 1mf7_A 3 QEDSDIAFLIDGSGSIIPH------DFRRMKEFVSTVMEQLKK-----SKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSL 71 (194) T ss_dssp CCCEEEEEEEECCTTSCHH------HHHHHHHHHHHHHHHHCC-----TTEEEEEEEESSSEEEEECHHHHHHSCCHHHH T ss_pred CCCEEEEEEEECCCCCCHH------HHHHHHHHHHHHHHHCCC-----CCCEEEEEEEEEEEEEEECCCCCCCHHHHHHH T ss_conf 9871799999598998879------999999999999997198-----88089999965403775114663668999987 Q ss_pred HHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 74015-68874564237889999874211012346777666169999840458888889789999999999789879999 Q gi|254780833|r 244 INRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAI 322 (371) Q Consensus 244 i~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tI 322 (371) |+.+. .+|+|++..++.++.+.+.... ....++.+|++|++|||..+....... .....+|..||+||+| T Consensus 72 i~~l~~~~g~t~~~~al~~a~~~~~~~~------~~~~~~~~kvvvl~tDG~~~~~~~~~~---~~~~~l~~~gv~v~~V 142 (194) T 1mf7_A 72 VKPITQLLGRTHTATGIRKVVRELFNIT------NGARKNAFKILVVITDGEKFGDPLGYE---DVIPEADREGVIRYVI 142 (194) T ss_dssp HTTCCCCCSCBCHHHHHHHHHHTTTSGG------GTCCTTSEEEEEEEESSCCBSCSSCGG---GTHHHHHHTTEEEEEE T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHH------CCCCCCCCEEEEEEECCCCCCCHHHHH---HHHHHHHHCCCEEEEE T ss_conf 6413423698669999999999874143------267677664999994788789804499---9999999779999999 Q ss_pred EECCCC----CHHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHHH Q ss_conf 941864----27989983389---808982898999999999999640 Q gi|254780833|r 323 GVQAEA----ADQFLKNCASP---DRFYSVQNSRKLHDAFLRIGKEMV 363 (371) Q Consensus 323 g~~~~~----~~~~l~~cAs~---~~~y~~~~~~~L~~af~~I~~~i~ 363 (371) |++... +...|+.+|+. .|+|.+++.++|.+.++.|.++|. T Consensus 143 gi~~~~~~~~~~~~L~~iAs~~~~~~~~~v~~~~~L~~~~~~l~~~i~ 190 (194) T 1mf7_A 143 GVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIF 190 (194) T ss_dssp EESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHH T ss_pred EECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHC T ss_conf 978876663469999998669986608994999999999999987641 No 14 >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Probab=99.77 E-value=7.4e-17 Score=118.79 Aligned_cols=182 Identities=13% Similarity=0.215 Sum_probs=138.6 Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHH Q ss_conf 34674069985276311566787214898999998750023355553110479878863674178166655--8789999 Q gi|254780833|r 165 SDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQE 242 (371) Q Consensus 165 ~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~ 242 (371) +..++|++||+|.||||+. ++++.+++++..+++.+...+ ...+++++.|........++.. +...+.. T Consensus 10 C~~~~DlvfvlD~SgSm~~------~~~~~~k~~~~~li~~l~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (202) T 1ijb_A 10 CSRLLDLVFLLDGSSRLSE------AEFEVLKAFVVDMMERLRVSQ---KWVRVAVVEYHDGSHAYIGLKDRKRPSELRR 80 (202) T ss_dssp BCSCEEEEEEEECBTTSCH------HHHHHHHHHHHHHHHTBCBST---TSEEEEEEEESSSEEEEECTTCCCCHHHHHH T ss_pred CCCCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHCCCCC---CCCEEEEEEECCCEEEEEECCCCCCHHHHHH T ss_conf 8987348999968899885------899999999999998666788---8736888774263268860675314999999 Q ss_pred HHHCCCCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEE Q ss_conf 97401568--8745642378899998742110123467776661699998404588888897899999999997898799 Q gi|254780833|r 243 KINRLIFG--STTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVY 320 (371) Q Consensus 243 ~i~~l~~~--g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~ 320 (371) .++.+... ++++...++.+....+.. ....+...|.+|+++||..+..... .....+..+|+.||+|| T Consensus 81 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~a~~l~~~gi~i~ 150 (202) T 1ijb_A 81 IASQVKYAGSQVASTSEVLKYTLFQIFS--------KIDRPEASRIALLLMASQEPQRMSR--NFVRYVQGLKKKKVIVI 150 (202) T ss_dssp HHHTCCCCCBSCCCHHHHHHHHHHHTSS--------SCSCTTSEEEEEEEECCCCCGGGCT--THHHHHHHHHHTTEEEE T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHH--------HCCCCCCCEEEEEEEECCCCCCCCH--HHHHHHHHHHHCCCEEE T ss_conf 9975540477520499999999975544--------2057765213589995368986324--49999999986798899 Q ss_pred EEEECCCCCHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHHHHE Q ss_conf 99941864279899833---8980898289899999999999964000 Q gi|254780833|r 321 AIGVQAEAADQFLKNCA---SPDRFYSVQNSRKLHDAFLRIGKEMVKQ 365 (371) Q Consensus 321 tIg~~~~~~~~~l~~cA---s~~~~y~~~~~~~L~~af~~I~~~i~~~ 365 (371) +||+|.+.+...|+.+| ++.++|.+++.++|.+.+++|.+.|... T Consensus 151 ~igiG~~~~~~~l~~ia~~~~~~~~~~~~~~~~l~~~~~~i~~~iC~~ 198 (202) T 1ijb_A 151 PVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDL 198 (202) T ss_dssp EEEESTTSCHHHHHHHHHHCTTCCCEEESSGGGHHHHHHHHHHHHHHH T ss_pred EEEECCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHCCC T ss_conf 999678469999999973799761899489999999999999986288 No 15 >2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Probab=99.71 E-value=3.9e-16 Score=114.48 Aligned_cols=152 Identities=12% Similarity=0.080 Sum_probs=119.1 Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCC-EEECCCCCCHHHHHHHHHCCC Q ss_conf 0699852763115667872148989999987500233555531104798788636741-781666558789999974015 Q gi|254780833|r 170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKI-VQTFPLAWGVQHIQEKINRLI 248 (371) Q Consensus 170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~lt~~~~~~~~~i~~l~ 248 (371) .+++++|.|+||..... ..+|++.+++++..+++.+..... ..+++++.|.... ....+++.+...+...++.+. T Consensus 4 a~viviD~S~SM~~~D~-~p~Rl~~ak~a~~~li~~~~~~~~---~~~vg~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 79 (192) T 2x5n_A 4 ATMILIDNSEWMINGDY-IPTRFEAQKDTVHMIFNQKINDNP---ENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLP 79 (192) T ss_dssp EEEEEECCSGGGGCTTS-SSCHHHHHHHHHHHHHHHHHHHCT---TCEEEEEECCTTSCCEEEEEESCHHHHHHHHTTCC T ss_pred EEEEEEECCHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHCCC---CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC T ss_conf 99999989855437898-978999999999999998764597---77499986057643014788408999998740234 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 68874564237889999874211012346777666169999840458888889789999999999789879999941864 Q gi|254780833|r 249 FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEA 328 (371) Q Consensus 249 ~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg~~~~~ 328 (371) ++|+|++..|+..++..+... ......+.|+++|||..+. +......+++.+++.||+||+||||.+. T Consensus 80 ~~G~T~l~~al~~A~~~l~~~---------~~~~~~~~iil~tdg~~~~---~~~~~~~~a~~~~~~~i~i~~Ig~G~~~ 147 (192) T 2x5n_A 80 VRGNAKFGDGIQIAQLALKHR---------ENKIQRQRIVAFVGSPIVE---DEKNLIRLAKRMKKNNVAIDIIHIGELQ 147 (192) T ss_dssp CCSCCCHHHHHHHHHHHHHTC---------SCTTSEEEEEEEECSCCSS---CHHHHHHHHHHHHHTTEEEEEEEESCC- T ss_pred CCCCCCCCHHHHHHHHHHHHH---------HHCCCCEEEEEEECCCCCC---CHHHHHHHHHHHCCCCCEEEEEEEECCC T ss_conf 468765227999999999862---------1104650699996889753---0678999999851357507999971767 Q ss_pred CHHHHHHHC Q ss_conf 279899833 Q gi|254780833|r 329 ADQFLKNCA 337 (371) Q Consensus 329 ~~~~l~~cA 337 (371) +...|+.++ T Consensus 148 ~~~~l~~~~ 156 (192) T 2x5n_A 148 NESALQHFI 156 (192) T ss_dssp --CHHHHHH T ss_pred CHHHHHHHH T ss_conf 879999999 No 16 >2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Probab=99.62 E-value=2e-14 Score=104.10 Aligned_cols=155 Identities=20% Similarity=0.276 Sum_probs=112.2 Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC----CHHH Q ss_conf 134674069985276311566787214898999998750023355553110479878863674178166655----8789 Q gi|254780833|r 164 KSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW----GVQH 239 (371) Q Consensus 164 ~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~----~~~~ 239 (371) ....++|++|++|.|+||.. +.++.+++++..+++.+...+ ...+++.+.|........++.. +... T Consensus 13 ~~~~~lDivfvlD~S~Sm~~------~~~~~~k~~v~~~i~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (178) T 2xgg_A 13 MGTNQLDICFLIDSSGSIGI------QNFRLVKQFLHTFLMVLPIGP---EEVNNAVVTYSTDVHLQWDLQSPNAVDKQL 83 (178) T ss_dssp -CTTCEEEEEEEECCTTTCH------HHHHHHHHHHHHHHHHSCBST---TSEEEEEEEESSSEEEEECTTSGGGSCHHH T ss_pred CCCCCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHHCCC---CCEEEEEEECCCCEEEEEECCCCCCHHHHH T ss_conf 89998769999958899884------899999999999999850357---613999874044303664024431042999 Q ss_pred HHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCE Q ss_conf 999974015-6887456423788999987421101234677766616999984045888888978999999999978987 Q gi|254780833|r 240 IQEKINRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAI 318 (371) Q Consensus 240 ~~~~i~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~ 318 (371) +...+..+. ..+.++...++.+..+.+.... ....++.+|++|+||||.++++ ......++.+|+.||+ T Consensus 84 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~------~~~~~~~~~vviliTDG~~~~~----~~~~~~a~~lk~~gi~ 153 (178) T 2xgg_A 84 AAHAVLDMPYKKGSTNTSDGLKACKQILFTGS------RPGREHVPKLVIGMTDGESDSD----FRTVRAAKEIRELGGI 153 (178) T ss_dssp HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC------CTTCTTSCEEEEEEESSCCCHH----HHHSHHHHHHHHTTCE T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC------CCCCCCCCEEEEEEECCCCCCC----CCHHHHHHHHHHCCCE T ss_conf 99999862302365507899999999875330------3786523013699843887887----3799999999978998 Q ss_pred EEEEEECCCCCHHHHHHHC Q ss_conf 9999941864279899833 Q gi|254780833|r 319 VYAIGVQAEAADQFLKNCA 337 (371) Q Consensus 319 i~tIg~~~~~~~~~l~~cA 337 (371) ||+||+|.....++|..-+ T Consensus 154 I~~iGiG~~~~~ell~~~~ 172 (178) T 2xgg_A 154 VTVLAVGHYVAAALVPRGS 172 (178) T ss_dssp EEEEECC------------ T ss_pred EEEEEECCCCHHHCCCCCC T ss_conf 9999978752442566664 No 17 >1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Probab=99.58 E-value=1e-14 Score=105.93 Aligned_cols=169 Identities=18% Similarity=0.264 Sum_probs=124.6 Q ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCC--CHHHHHHHH Q ss_conf 674069985276311566787214898999998750023355553110479878863674178166655--878999997 Q gi|254780833|r 167 IGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAW--GVQHIQEKI 244 (371) Q Consensus 167 ~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~--~~~~~~~~i 244 (371) .|+|++|++|.|+||.. ++++.+++++..+++.+.. ...++++..|........++.. +...+...+ T Consensus 1 g~~DivfllD~S~Sm~~------~~f~~~k~~~~~~i~~l~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i 69 (179) T 1mjn_A 1 GNVDLVFLFDGSMSLQP------DEFQKILDFMKDVMKKCSN-----TSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALL 69 (179) T ss_dssp CCEEEEEEEECBTTCCH------HHHHHHHHHHHHHHHHTTT-----SSEEEEEEEESSSEEEEECHHHHHHHCCHHHHH T ss_pred CCEEEEEEEECCCCCCH------HHHHHHHHHHHHHHHHHCC-----CCCEEEEEEEEECCEECCCCCCCCCHHHHHHHH T ss_conf 97699999968899987------9999999999999997375-----776699999860211113521204699999987 Q ss_pred HCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 4015-688745642378899998742110123467776661699998404588888897899999999997898799999 Q gi|254780833|r 245 NRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIG 323 (371) Q Consensus 245 ~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tIg 323 (371) +.+. .+|+++...++.++...+..... ...+..+|++||+|||+++.+... ++..++.+++++ T Consensus 70 ~~~~~~~g~~~~~~al~~a~~~~~~~~~------~~r~~~~k~ivllTDG~~~~~~~~----------~~~~~~~~~~~~ 133 (179) T 1mjn_A 70 KHVKHMLLLTNTFGAINYVATEVFREEL------GARPDATKVLIIITDGEATDSGNI----------DAAKDIIRYIIG 133 (179) T ss_dssp TTCCCCCBCCCHHHHHHHHHHHTSSGGG------TCCTTSEEEEEEEESSCCSSCSCC----------GGGTTSEEEEEE T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHH------CCCCCCCEEEEEECCCCCCCCHHH----------HHHHCCEEEEEE T ss_conf 5125578983278899999999854530------689987148999807998860689----------998298688999 Q ss_pred ECCCC----CHHHHHHHCCC---CEEEEECCHHHHHHHHHHHHHHH Q ss_conf 41864----27989983389---80898289899999999999964 Q gi|254780833|r 324 VQAEA----ADQFLKNCASP---DRFYSVQNSRKLHDAFLRIGKEM 362 (371) Q Consensus 324 ~~~~~----~~~~l~~cAs~---~~~y~~~~~~~L~~af~~I~~~i 362 (371) ++... +...|+.+|+. .|+|.+++.++|.+.+++|.++| T Consensus 134 i~~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~~~~~l~~~I 179 (179) T 1mjn_A 134 IGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLCTELQKKI 179 (179) T ss_dssp ESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGGSCCHHHHHHHHC T ss_pred EEECCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHC T ss_conf 9946886017999999857998633998799999999999997249 No 18 >2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Probab=99.55 E-value=1.2e-16 Score=117.47 Aligned_cols=170 Identities=16% Similarity=0.174 Sum_probs=116.9 Q ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEE-ECCCCCCHHHHHHHHH Q ss_conf 674069985276311566787214898999998750023355553110479878863674178-1666558789999974 Q gi|254780833|r 167 IGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQ-TFPLAWGVQHIQEKIN 245 (371) Q Consensus 167 ~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~lt~~~~~~~~~i~ 245 (371) .+-+++||+|.||||.. ++++.+++++..++....... .+.+++.|...... ..+++.+....+..++ T Consensus 4 ~~~~iv~vlD~SGSM~~------~~~~~~k~~~~~~l~~~~~~~-----d~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 72 (189) T 2x31_A 4 SDRVLIFAVDASGSAAV------ARLSEAKGAVELLLGRAYAAR-----DHVSLITFRGTAAQVLLQPSRSLTQTKRQLQ 72 (189) T ss_dssp SCCEEEEEEECCTTSCC--------CHHHHHHHHHHHHHSCTTT-----SCCCEEEESBSCCCBCTTTCSCHHHHHHHHH T ss_pred CCCEEEEEEEECCCCCC------HHHHHHHHHHHHHHHHHCCCC-----CEEEEEEEEECCCCCCCCCCCCHHHHHHHHH T ss_conf 77469999981757892------699999999999999725689-----6799999993243135887468999999985 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHH-------HHHHHHHCCCE Q ss_conf 01568874564237889999874211012346777666169999840458888889789999-------99999978987 Q gi|254780833|r 246 RLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLF-------YCNEAKRRGAI 318 (371) Q Consensus 246 ~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~-------~c~~~k~~gi~ 318 (371) .+.++|+|+...++..++..+... ..+...++|||+|||.++.+......... .+...+..||. T Consensus 73 ~~~~~GgT~~~~al~~a~~~~~~~---------~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 143 (189) T 2x31_A 73 GLPGGGGTPLASGMEMAMVTAKQA---------RSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMP 143 (189) T ss_dssp HCCCCBCCCCHHHHHHHHHHHHTC---------TTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSC T ss_pred HCCCCCCCCHHHHHHHHHHHHHHH---------CCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 344579861789999999999972---------24588777999647987768786045899999999999998726983 Q ss_pred EEEEEECCCCCHHHHHHHC--CCCEEEEECCH--HHHHHHHHH Q ss_conf 9999941864279899833--89808982898--999999999 Q gi|254780833|r 319 VYAIGVQAEAADQFLKNCA--SPDRFYSVQNS--RKLHDAFLR 357 (371) Q Consensus 319 i~tIg~~~~~~~~~l~~cA--s~~~~y~~~~~--~~L~~af~~ 357 (371) +++|+++... ...|+++| ++|.||.+++. ++|.+++.. T Consensus 144 ~~~i~~g~~~-~~~l~~iA~~~gG~y~~~~~~~~~~l~~~~~~ 185 (189) T 2x31_A 144 AVIIDTAMRP-NPALVDLARTMDAHYIALPRATAHKMADVLGA 185 (189) T ss_dssp CTHHHHHHSS-CSSSCSTTTEEEESSTTTHHHHHHHHHHHHHH T ss_pred EEEEECCCCC-HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH T ss_conf 7998479787-69999999761999997599999999999999 No 19 >2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} Probab=99.47 E-value=4.7e-12 Score=89.82 Aligned_cols=163 Identities=11% Similarity=0.126 Sum_probs=107.6 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEE-ECCCCCCHHHHHHHH Q ss_conf 4674069985276311566787214898999998750023355553110479878863674178-166655878999997 Q gi|254780833|r 166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQ-TFPLAWGVQHIQEKI 244 (371) Q Consensus 166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~lt~~~~~~~~~i 244 (371) +.|+|++|++|.||||.. +++.+++.+..+++.+... ....|++++.|.+.... ..+++.+...++.++ T Consensus 1 ~~pvDl~fviD~SgSM~~-------~i~~~k~~~~~l~~~l~~~---~~~~r~g~v~f~d~~~~~~~~~t~~~~~~~~~i 70 (212) T 2iue_A 1 DNSVDLYFLMGLSGSAQG-------HLSNVQTLGSDLLKALNEI---SRSGRIGFGSIVNMTFQHILKLTADSSQFQREL 70 (212) T ss_dssp CCCEEEEEEEECCGGGTT-------THHHHHHHHHHHHHHHHHH---CSCEEEEEEEESSSCEEEEEEEESCHHHHHHHH T ss_pred CCCEEEEEEEECCCCHHH-------HHHHHHHHHHHHHHHHHHC---CCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHH T ss_conf 984689999988805267-------9999999999999999726---987089999705643433465576399999998 Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC----------------------- Q ss_conf 401568874564237889999874211012346777666169999840458888889----------------------- Q gi|254780833|r 245 NRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID----------------------- 301 (371) Q Consensus 245 ~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~----------------------- 301 (371) +.+.+.|++...+++..|.......... ...+...|+|||+|||.++..... T Consensus 71 ~~~~~~gg~d~~e~~~~al~~a~~~~~~-----~~~~~~~~~ivl~tD~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 145 (212) T 2iue_A 71 RKQLVSGKLATPKGQLDAVVQVAICLGE-----IGWRNGTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSR 145 (212) T ss_dssp HTCCCCCCSSSSBCHHHHHHHHHHCHHH-----HTCCSSEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSSBBGGG T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHH-----CCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCC T ss_conf 6302148988850699999999987664-----37777735999996898655663024445311587157525653567 Q ss_pred ----HHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHC--CCCEEEEE Q ss_conf ----789999999999789879999941864279899833--89808982 Q gi|254780833|r 302 ----NKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCA--SPDRFYSV 345 (371) Q Consensus 302 ----~~~~~~~c~~~k~~gi~i~tIg~~~~~~~~~l~~cA--s~~~~y~~ 345 (371) .......+..+++++|.++.... ....+.++..+ .+|.++.. T Consensus 146 ~~~d~~~~~~~~~~~~~~~i~~i~~~~--~~~~~~~~~l~~~~~g~~v~~ 193 (212) T 2iue_A 146 GEPDYQSVVQLASKLAENNIQPIFVVP--SRMVKTYEKLTTFIPKLTIGE 193 (212) T ss_dssp GSSCCCCHHHHHHHHHHHTCEEEEEEE--HHHHHHHHHHHHHSTTCEEEE T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEEC--CCHHHHHHHHHHHCCCCCHHH T ss_conf 776777799999999863975899974--532789999999738741266 No 20 >3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Probab=99.41 E-value=5.1e-13 Score=95.61 Aligned_cols=180 Identities=20% Similarity=0.299 Sum_probs=126.6 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCC--HHHHHHH Q ss_conf 46740699852763115667872148989999987500233555531104798788636741781666558--7899999 Q gi|254780833|r 166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWG--VQHIQEK 243 (371) Q Consensus 166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~--~~~~~~~ 243 (371) +..+|++|++|.|+|+... ....+++.+...+..++.. ..+++++.|+........|... ....... T Consensus 128 ~~~~DivfvlDgS~Si~~~------df~~~k~f~~~v~~~f~~~-----~~qvg~vqys~~~~~~f~l~d~~~~~~~~~~ 196 (1095) T 3k6s_A 128 RQEQDIVFLIDGSGSISSR------NFATMMNFVRAVISQFQRP-----STQFSLMQFSNKFQTHFTFEEFRRSSNPLSL 196 (1095) T ss_dssp CCCEEEEEEEECCTTSCSH------HHHHHHHHHHHHHHSSCSS-----SEEEEEEEESSSEEEEECSHHHHSCSCGGGG T ss_pred CCCCCEEEEEECCCCCCCC------CHHHHHHHHHHHHHHCCCC-----CEEEEEEEECCCEEEEEEHHHCCCCCCHHHH T ss_conf 6674379999089872743------0689999999998624667-----5499999613732588870343333026787 Q ss_pred HHCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 74015-68874564237889999874211012346777666169999840458888889789999999999789879999 Q gi|254780833|r 244 INRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAI 322 (371) Q Consensus 244 i~~l~-~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tI 322 (371) ++.+. .+|.|++..|+......++.. .....++..|+||++|||+-+............ ++..||.+|+| T Consensus 197 v~~i~~~~g~T~Ta~ai~~~~~~~f~~------~~g~r~~a~kv~IviTDG~s~~d~~~l~~~i~~---~~~~gI~~~aI 267 (1095) T 3k6s_A 197 LASVHQLQGFTYTATAIQNVVHRLFHA------SYGARRDAAKILIVITDGKKEGDSLDYKDVIPM---ADAAGIIRYAI 267 (1095) T ss_dssp TTTCCCCCSCBCHHHHHHHHHTTTTST------TTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHH---HHHHCEEECCE T ss_pred HHHEEECCCCCCHHHHHHHHHHHHHHH------HHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH---HHHCCCEEEEE T ss_conf 541461367430788899999976316------426888984179999268645673203444445---86489289999 Q ss_pred EECCC----CCHHHHHHHCC-C--CEEEEECCHHHHHHHHHHHHHHHHHE Q ss_conf 94186----42798998338-9--80898289899999999999964000 Q gi|254780833|r 323 GVQAE----AADQFLKNCAS-P--DRFYSVQNSRKLHDAFLRIGKEMVKQ 365 (371) Q Consensus 323 g~~~~----~~~~~l~~cAs-~--~~~y~~~~~~~L~~af~~I~~~i~~~ 365 (371) |++.. .....|+.+|+ | .|+|.+++...|.+....+.++|... T Consensus 268 Gvg~~~~~~~~~~eL~~iAs~p~~~~~f~v~~~~aL~~i~~~L~~~i~~i 317 (1095) T 3k6s_A 268 GVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFAI 317 (1095) T ss_dssp EBSSGGGSTTSSHHHHTTSCSSTTTSCCCBSCSGGGGSSTTTHHHHHHTC T ss_pred ECCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCEEE T ss_conf 72543256433535421205887403899355577667777641652564 No 21 >2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing, platelet integrin ALPHAIIBBETA3, polymorphism, glycoprotein, cell adhesion, calcium; HET: NAG MAN; 2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* Probab=99.11 E-value=2e-08 Score=67.90 Aligned_cols=193 Identities=13% Similarity=0.155 Sum_probs=113.8 Q ss_pred EEECCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCC---------- Q ss_conf 2210001346740699852763115667872148989999987500233555531104798788636741---------- Q gi|254780833|r 158 SVKISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKI---------- 227 (371) Q Consensus 158 ~~~~~~~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---------- 227 (371) ..........|+|++|++|.|+||.. .++.+++....+.+.+... ....|+|+..|.+.. T Consensus 101 ~~~v~~~~~yPvDL~fLmD~TgSM~d-------dI~~lk~~~~~l~~~l~~~---t~~~rlGfgsf~Dk~~~p~~~~~~~ 170 (461) T 2vdr_B 101 SIQVRQVEDYPVDIYYLMDLSYSMKD-------DLWSIQNLGTKLATQMRKL---TSNLRIGFGAFVDKPVSPYMYISPP 170 (461) T ss_dssp EEEEECCSCCCEEEEEEEECSGGGGG-------GHHHHHHHHHHHHHHHHHH---CTTEEEEEEEECCCSSTTTSCCCST T ss_pred EEEEECCCCCCCCEEEEEECCCCHHH-------HHHHHHHHHHHHHHHHHHH---CCCCEEEEEEEEEECCCCCCCCCCH T ss_conf 99875167787447999947746699-------9999999999999999852---8884799999897347764444666 Q ss_pred --------------------EEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH-HHHCCCCCCCCCCCCCEE Q ss_conf --------------------78166655878999997401568874564237889999874-211012346777666169 Q gi|254780833|r 228 --------------------VQTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFD-AKEKLEHIAKGHDDYKKY 286 (371) Q Consensus 228 --------------------~~~~~lt~~~~~~~~~i~~l~~~g~T~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~k~ 286 (371) ....|||.+...+...++.+.+.||-...++..-|..+..- .+.-.| +++.+|+ T Consensus 171 ~~l~~Pc~~~~~~c~~~f~~~~~l~lT~d~~~F~~~V~~~~~sGggD~PE~~~dAL~qa~vc~~~igW-----R~~a~ri 245 (461) T 2vdr_B 171 EALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGW-----RNDASHL 245 (461) T ss_dssp HHHHCTTGGGTSCCCCCCSEEEEEEEESCHHHHHHHHHTCCCCCCSBSSBCHHHHHHHHHHCHHHHTC-----CTTSEEE T ss_pred HHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCEECCCCCCCCCCHHHHHHHHHHHHHHCCC-----CCCCEEE T ss_conf 55048664678776787330452468878999999875036547986776689999999986310787-----8687599 Q ss_pred EEEEECCCCC--------------CC--------------CCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHC Q ss_conf 9998404588--------------88--------------88978999999999978987-9999941864279899833 Q gi|254780833|r 287 IIFLTDGENS--------------SP--------------NIDNKESLFYCNEAKRRGAI-VYAIGVQAEAADQFLKNCA 337 (371) Q Consensus 287 ivl~TDG~~~--------------~~--------------~~~~~~~~~~c~~~k~~gi~-i~tIg~~~~~~~~~l~~cA 337 (371) +||+||...+ ++ ..+.+...++.+.+++++|. ||+|.-..-.-.+.|...- T Consensus 246 lvliTDA~~H~agDgkl~giv~pnDg~Chl~~~~~y~~s~~~DYPSv~ql~~~l~e~~i~pIFAVt~~~~~~Y~~L~~~i 325 (461) T 2vdr_B 246 LVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELI 325 (461) T ss_dssp EEEEESSCBCCTTGGGGGTCCSCCCCCCCCCTTSBCTTTTTSCCCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHTTS T ss_pred EEEECCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHC T ss_conf 99989788433687544104438876315379887665555778999999999986496799996553222689999746 Q ss_pred CCCEEEE-ECCHHHHHHHHHHHHHHHHHE Q ss_conf 8980898-289899999999999964000 Q gi|254780833|r 338 SPDRFYS-VQNSRKLHDAFLRIGKEMVKQ 365 (371) Q Consensus 338 s~~~~y~-~~~~~~L~~af~~I~~~i~~~ 365 (371) .++..-. .++...+.+..++--++|.+. T Consensus 326 ~~s~vg~L~~dSsNiv~LI~~aY~~i~s~ 354 (461) T 2vdr_B 326 PGTTVGVLSMDSSNVLQLIVDAYGKIRSK 354 (461) T ss_dssp TTCEEEEESSCCHHHHHHHHHHHHTCCEE T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHCE T ss_conf 87536774477376999999999876307 No 22 >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, alternative splicing, cell adhesion, disease mutation, glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Probab=99.06 E-value=1.6e-08 Score=68.49 Aligned_cols=192 Identities=16% Similarity=0.191 Sum_probs=114.2 Q ss_pred EEECCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCC---------- Q ss_conf 2210001346740699852763115667872148989999987500233555531104798788636741---------- Q gi|254780833|r 158 SVKISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKI---------- 227 (371) Q Consensus 158 ~~~~~~~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---------- 227 (371) ........+.|+|+++++|.|+||.. .++.++.....+.+.+... ....|+|+-+|-+++ T Consensus 101 ~~~~~~~~~~pvdly~lmD~s~sm~d-------d~~~l~~l~~~l~~~~~~~---t~~~~~gfgsfvdk~~~p~~~~~~~ 170 (690) T 3fcs_B 101 SIQVRQVEDYPVDIYYLMDLSYSMKD-------DLWSIQNLGTKLATQMRKL---TSNLRIGFGAFVDKPVSPYMYISPP 170 (690) T ss_dssp EEEEECCBTCCEEEEEEEECSGGGHH-------HHHHTTTTTHHHHHHHHHH---CSCEEEEEEEECCCSSTTTSCCCST T ss_pred EEEEECCCCCCCCEEEEEECCCCHHH-------HHHHHHHHHHHHHHHHHHH---CCCCEEEEEEECCCCCCCCCCCCCH T ss_conf 89873378898437999836752788-------9999999999999999862---8673687777204656775667676 Q ss_pred --------------------EEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE Q ss_conf --------------------781666558789999974015688745642378899998742110123467776661699 Q gi|254780833|r 228 --------------------VQTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYI 287 (371) Q Consensus 228 --------------------~~~~~lt~~~~~~~~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~i 287 (371) .-..|||.+.......|+....+|+-...+|---|..+..- =.... ..+++.+|+| T Consensus 171 ~~~~~pc~~~~~~c~~~~~~~~~~~lt~~~~~f~~~v~~~~~s~n~d~pe~~~dal~q~~v---c~~~i-gwr~~~~~~~ 246 (690) T 3fcs_B 171 EALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATV---CDEKI-GWRNDASHLL 246 (690) T ss_dssp TTTTCTTSSSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHH---CHHHH-TCCSSSEEEE T ss_pred HHCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHH---CCCCC-CCCCCCEEEE T ss_conf 5404877577887678833046545666789999987525511687787504667877652---31223-5678976999 Q ss_pred EEEECCCCC--------------CC--------------CCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHCC Q ss_conf 998404588--------------88--------------88978999999999978987-99999418642798998338 Q gi|254780833|r 288 IFLTDGENS--------------SP--------------NIDNKESLFYCNEAKRRGAI-VYAIGVQAEAADQFLKNCAS 338 (371) Q Consensus 288 vl~TDG~~~--------------~~--------------~~~~~~~~~~c~~~k~~gi~-i~tIg~~~~~~~~~l~~cAs 338 (371) ||.||+..+ ++ ..+.+...++...+++++|. ||+|.-......+.|...-. T Consensus 247 v~~tD~~~H~agDg~l~gi~~pnd~~chl~~~~~y~~~~~~dyPs~~q~~~~l~~~~i~~ifavt~~~~~~y~~l~~~~~ 326 (690) T 3fcs_B 247 VFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIP 326 (690) T ss_dssp EEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHHHST T ss_pred EEEECCCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCC T ss_conf 99806731125665423563167761140798852556767789999999999872967999976654006899997548 Q ss_pred CCEEEEE-CCHH----HHHHHHHHHHHHHH Q ss_conf 9808982-8989----99999999999640 Q gi|254780833|r 339 PDRFYSV-QNSR----KLHDAFLRIGKEMV 363 (371) Q Consensus 339 ~~~~y~~-~~~~----~L~~af~~I~~~i~ 363 (371) ++..... .+.. =|.++|++|..++. T Consensus 327 ~~~~~~l~~dssnv~~li~~~y~~~~s~v~ 356 (690) T 3fcs_B 327 GTTVGVLSMDSSNVLQLIVDAYGKIRSKVE 356 (690) T ss_dssp TCEEEEECTTCTTHHHHHHHHHHHHTTCEE T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHCEEE T ss_conf 752687057861599999999987526467 No 23 >2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans} Probab=98.85 E-value=1.1e-07 Score=63.44 Aligned_cols=137 Identities=14% Similarity=0.116 Sum_probs=84.7 Q ss_pred CCCCCEEEEECCCCCCCCCCCCC---HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCC--HHHH Q ss_conf 46740699852763115667872---148989999987500233555531104798788636741781666558--7899 Q gi|254780833|r 166 DIGLDMMMVLDVSLSMNDHFGPG---MDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWG--VQHI 240 (371) Q Consensus 166 ~~~idi~~viD~SgSm~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~--~~~~ 240 (371) ..+-.+++++|.||||......+ ....+.+.-. .+.- ... ..+.+++.|++.... +|++.+ ..+. T Consensus 360 ~~~~r~lv~iDvSGSM~~~~~~~~~~~~~~~~a~ll--a~~~-~r~------~~~~~vv~Fs~~~~~-v~l~~~~sl~~~ 429 (535) T 2nvo_A 360 PANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAM--SLIA-LRT------EPDALTMGFAEQFRP-LGITPRDTLESA 429 (535) T ss_dssp CCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHH--HHHH-HHH------SSEEEEEEEBSSEEE-CCCCTTCCHHHH T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH--HHHH-HCC------CCCEEEEEECCCEEE-ECCCCCCCHHHH T ss_conf 889737999976555666423787537799999999--9998-075------898079842796587-178888649999 Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEE Q ss_conf 99974015688745642378899998742110123467776661699998404588888897899999999997898799 Q gi|254780833|r 241 QEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVY 320 (371) Q Consensus 241 ~~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~ 320 (371) ...+..+ .+|+|++..++.|+.+. ....+.+|++|||+.+.+...+...........+.+.+++ T Consensus 430 ~~~~~~~-~~ggT~~~~~l~~a~~~---------------~~~~D~iIllTD~e~~~g~~~p~~al~~yr~~~~~~~klv 493 (535) T 2nvo_A 430 MQKAQSV-SFGGTDCAQPILWAAQE---------------RLDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLI 493 (535) T ss_dssp HHHTCCS-SBCCCCTTHHHHHHHHT---------------TCCCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCCEEE T ss_pred HHHHHHC-CCCCCHHHHHHHHHHHC---------------CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEE T ss_conf 9998615-78996699999999856---------------5458989998089977899999999999999718997189 Q ss_pred EEEECCCC Q ss_conf 99941864 Q gi|254780833|r 321 AIGVQAEA 328 (371) Q Consensus 321 tIg~~~~~ 328 (371) +|++.... T Consensus 494 ~v~l~~~~ 501 (535) T 2nvo_A 494 VVGLTATE 501 (535) T ss_dssp EEETTCSC T ss_pred EEEECCCC T ss_conf 99803788 No 24 >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Probab=98.71 E-value=1.7e-08 Score=68.37 Aligned_cols=191 Identities=15% Similarity=0.202 Sum_probs=108.7 Q ss_pred EEECCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC----------- Q ss_conf 221000134674069985276311566787214898999998750023355553110479878863674----------- Q gi|254780833|r 158 SVKISSKSDIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK----------- 226 (371) Q Consensus 158 ~~~~~~~~~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~----------- 226 (371) ........+.|+|+++++|.|+||.. .++.++.....+.+.+... ....|+|+-+|.++ T Consensus 94 ~~~~~~~~~~pvdly~lmd~s~sm~~-------d~~~~~~~~~~l~~~~~~~---t~~~~~g~g~fvdk~~~p~~~~~p~ 163 (687) T 3k6s_B 94 NVTFRRAKGYPIDLYYLMDLSYSMLD-------DLRNVKKLGGDLLRALNEI---TESGRIGFGSFVDKTVLPFVNTHPD 163 (687) T ss_dssp EEEECCCCCCCCEEEEEEECSSTTHH-------HHHTTTTCCTTHHHHHHSS---CCSCEEEEEEECCCSSTTSSCCSST T ss_pred EEEEECCCCCCCEEEEEEECCCCHHH-------HHHHHHHHHHHHHHHHHHH---CCCCEEECCCCCCCCCCCCCCCCHH T ss_conf 88875278898208999836741788-------9999999999999999863---8562760010123565875678877 Q ss_pred ------------------CEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE Q ss_conf ------------------17816665587899999740156887456423788999987421101234677766616999 Q gi|254780833|r 227 ------------------IVQTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYII 288 (371) Q Consensus 227 ------------------~~~~~~lt~~~~~~~~~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~iv 288 (371) ..-+++||.+.......++....+|+-...+|---|..+.. .=....++- +.+++|| T Consensus 164 ~~~~pc~~~~~~c~~~~~~~~~~~lt~~~~~f~~~~~~~~~~~n~d~pe~~~da~~q~~---~c~~~igwr--~~~~~~~ 238 (687) T 3k6s_B 164 KLRNPCPNKEKECQPPFAFRHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVA---ACPEEIGWR--NVTRLLV 238 (687) T ss_dssp TTTCCCCSCCCCCCCCCSCEEEEEEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHT---TCHHHHCCC--SSCCEEE T ss_pred HHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHEEEECCCCCCCCHHHHHHHHH---HCCCCCCCC--CCEEEEE T ss_conf 70288878887767883415422566778999998751670357768650166888877---502223645--7548999 Q ss_pred EEECCCCCC--------------C-------------CCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCHHHHHHHCCCC Q ss_conf 984045888--------------8-------------88978999999999978987-9999941864279899833898 Q gi|254780833|r 289 FLTDGENSS--------------P-------------NIDNKESLFYCNEAKRRGAI-VYAIGVQAEAADQFLKNCASPD 340 (371) Q Consensus 289 l~TDG~~~~--------------~-------------~~~~~~~~~~c~~~k~~gi~-i~tIg~~~~~~~~~l~~cAs~~ 340 (371) |.||...+. + ..+.+...++-.++++++|. ||+|.=..-.-...|...-.++ T Consensus 239 ~~td~~~h~agdg~l~gi~~pnd~~chl~~~~y~~~~~~dyps~~~~~~~~~~~~i~~ifavt~~~~~~y~~l~~~~~~~ 318 (687) T 3k6s_B 239 FATDDGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLTEIIPKS 318 (687) T ss_dssp EECSSCCCCTTGGGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEEECGGGHHHHHHHHHHSSSC T ss_pred EECCCCCCCCCCCCCCEECCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCC T ss_conf 98168744267642310404788731704883035666677898999999986492599997664443689999755775 Q ss_pred EEEEE----CCHH-HHHHHHHHHHHHHH Q ss_conf 08982----8989-99999999999640 Q gi|254780833|r 341 RFYSV----QNSR-KLHDAFLRIGKEMV 363 (371) Q Consensus 341 ~~y~~----~~~~-~L~~af~~I~~~i~ 363 (371) ..-.. .|.- =+.++|++|..++. T Consensus 319 ~~~~l~~ds~ni~~li~~~y~~i~s~v~ 346 (687) T 3k6s_B 319 AVGELSEDSSNVVQLIKNAYNKLSSRVF 346 (687) T ss_dssp CEEECCTTCCSCGGGTTTHHHHHSSCCC T ss_pred EEEEECCCCHHHHHHHHHHHHHHHCEEE T ss_conf 0476146647799999999986513799 No 25 >1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* Probab=98.69 E-value=7.9e-07 Score=58.26 Aligned_cols=146 Identities=14% Similarity=0.088 Sum_probs=97.7 Q ss_pred CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC--------------CEEECCCCC Q ss_conf 069985276311566787214898999998750023355553110479878863674--------------178166655 Q gi|254780833|r 170 DMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK--------------IVQTFPLAW 235 (371) Q Consensus 170 di~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~--------------~~~~~~lt~ 235 (371) .+++++|.|+||.....+..++++.+++++..++...-.. ....++|++.|+.. .....|+.. T Consensus 9 aiv~~iDvs~sM~~~~~~~~s~~~~a~~~~~~~~~~ki~~---~~~D~vglvlfgt~~t~N~l~~~~~~~~i~v~~~l~~ 85 (565) T 1jey_B 9 AVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFA---ENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLML 85 (565) T ss_dssp EEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHT---TCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEEC T ss_pred EEEEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC---CCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCC T ss_conf 1999998986776768899997999999999999987338---9998799999805788875554457775599745889 Q ss_pred -CHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH Q ss_conf -878999997401568-874564237889999874211012346777666169999840458888889789999999999 Q gi|254780833|r 236 -GVQHIQEKINRLIFG-STTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAK 313 (371) Q Consensus 236 -~~~~~~~~i~~l~~~-g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k 313 (371) +...++...+.+.++ +.++...++.++..+|.... ...+..++.|||+|||.+..+. .....+.+.++ T Consensus 86 ~~~~~l~~l~~~~~~~~~~~d~~~aL~va~~~l~~~~-------~~~k~~~~~Ivl~Td~~~p~~~---~~~~~i~~~l~ 155 (565) T 1jey_B 86 PDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHET-------IGKKFEKRHIEIFTDLSSRFSK---SQLDIIIHSLK 155 (565) T ss_dssp CCHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHS-------SSSCCSEEEEEEECCCCSCCCC---TTHHHHHHHHH T ss_pred CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH-------HCCCCCCEEEEEEECCCCCCCH---HHHHHHHHHHH T ss_conf 9999999998653688778787999999999999875-------0255562489999279988687---89999999998 Q ss_pred HCCCEEEEEEECCCC Q ss_conf 789879999941864 Q gi|254780833|r 314 RRGAIVYAIGVQAEA 328 (371) Q Consensus 314 ~~gi~i~tIg~~~~~ 328 (371) +.||.+..|++.... T Consensus 156 ~~~i~L~vi~~~~~~ 170 (565) T 1jey_B 156 KCDISLQFFLPFSLG 170 (565) T ss_dssp HTTEEEEEEESSCCC T ss_pred HCCCEEEEEECCCCC T ss_conf 659669997036665 No 26 >1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Probab=98.50 E-value=8.4e-06 Score=52.05 Aligned_cols=137 Identities=19% Similarity=0.229 Sum_probs=81.4 Q ss_pred CCCCCEEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCC--HHHHHH Q ss_conf 467406998527631156678-72148989999987500233555531104798788636741781666558--789999 Q gi|254780833|r 166 DIGLDMMMVLDVSLSMNDHFG-PGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWG--VQHIQE 242 (371) Q Consensus 166 ~~~idi~~viD~SgSm~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~--~~~~~~ 242 (371) ..+..+++.+|.||||..... ......+.+.-....+.. .... ..++.|++... .++++.. ...... T Consensus 366 ~~~~r~liavDvSGSM~~~~~g~~~~~~~~aa~la~~~~~-~~~~--------~~vv~Fs~~~~-~l~~~~~~~l~~~~~ 435 (538) T 1yvr_A 366 PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVAR-TEKD--------SHMVAFSDEML-PCPITVNMLLHEVVE 435 (538) T ss_dssp CCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHH-HCSS--------EEEEEESSSEE-CCSCCTTSCHHHHHH T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HCCC--------CEEEEECCCEE-ECCCCHHHHHHHHHH T ss_conf 7786389999764554374448975799999999999998-5799--------87999769358-727771014999999 Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 97401568874564237889999874211012346777666169999840458888889789999999999789879999 Q gi|254780833|r 243 KINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAI 322 (371) Q Consensus 243 ~i~~l~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~gi~i~tI 322 (371) .+.. ..+|+|++..++.|+... ....+++|++|||+.+.+...+...........+.+.++++| T Consensus 436 ~~~~-~~~ggT~~~~~i~~a~~~---------------~~~~D~~IvlTD~e~~~g~~~p~~al~~Yr~k~~~~ak~v~v 499 (538) T 1yvr_A 436 KMSD-ITMGSTDCALPMLWAQKT---------------NTAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVC 499 (538) T ss_dssp HHTT-CCCSCCCTTHHHHHHHHT---------------TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEE T ss_pred HHHC-CCCCCCCHHHHHHHHHHC---------------CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE T ss_conf 9843-678986189999999961---------------556898999817997789889999999999984899759999 Q ss_pred EECCCC Q ss_conf 941864 Q gi|254780833|r 323 GVQAEA 328 (371) Q Consensus 323 g~~~~~ 328 (371) ++.... T Consensus 500 ~l~~~~ 505 (538) T 1yvr_A 500 AMTSNG 505 (538) T ss_dssp ECSSSS T ss_pred ECCCCC T ss_conf 856898 No 27 >1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* Probab=96.69 E-value=0.025 Score=31.12 Aligned_cols=145 Identities=14% Similarity=0.152 Sum_probs=76.2 Q ss_pred CEEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC----------CEEECCCCC-CH Q ss_conf 06998527631156678-7214898999998750023355553110479878863674----------178166655-87 Q gi|254780833|r 170 DMMMVLDVSLSMNDHFG-PGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSK----------IVQTFPLAW-GV 237 (371) Q Consensus 170 di~~viD~SgSm~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~----------~~~~~~lt~-~~ 237 (371) .++|+||.|.||-...+ .....+..+.+.+..++...-. ......+|++-|+.. .+...+|.. +. T Consensus 37 ~iiflID~s~sM~~~~~~~~~s~~~~al~~i~~l~~~kIi---~~~kD~vgvvl~gt~~t~n~~~~~ni~v~~~l~~p~~ 113 (609) T 1jey_A 37 SLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKII---SSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGA 113 (609) T ss_dssp EEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHH---TTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCH T ss_pred EEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC---CCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCH T ss_conf 8999998988886878888878599999999999984476---7999849999975789888789885699604888898 Q ss_pred HHHHHHHHCC-------------CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC--H Q ss_conf 8999997401-------------568874564237889999874211012346777666169999840458888889--7 Q gi|254780833|r 238 QHIQEKINRL-------------IFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID--N 302 (371) Q Consensus 238 ~~~~~~i~~l-------------~~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~--~ 302 (371) ..++ .+..+ ..........++..+.+++.. .......|-|+|+||+++-..... . T Consensus 114 ~~ik-~L~~l~~~~~~~~~~~~~~~~~~~~l~~aL~~~~~~f~~---------~~~k~~~krI~lfTd~d~P~~~d~~~~ 183 (609) T 1jey_A 114 KRIL-ELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSD---------VQFKMSHKRIMLFTNEDNPHGNDSAKA 183 (609) T ss_dssp HHHH-HHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHT---------CSSCEEEEEEEEEESCSCTTTTCHHHH T ss_pred HHHH-HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---------HCCCCCCCEEEEECCCCCCCCCCHHHH T ss_conf 9999-999764123431000256766544699999999999986---------020236757999868998788851779 Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 8999999999978987999994186 Q gi|254780833|r 303 KESLFYCNEAKRRGAIVYAIGVQAE 327 (371) Q Consensus 303 ~~~~~~c~~~k~~gi~i~tIg~~~~ 327 (371) .........+++.||.|..+.++.+ T Consensus 184 ~~~~~~~~dl~~~gI~i~~~~i~~~ 208 (609) T 1jey_A 184 SRARTKAGDLRDTGIFLDLMHLKKP 208 (609) T ss_dssp HHHHHHHHHHHHHTEEEEEEEBCCT T ss_pred HHHHHHHHHHHHHCCEEEEECCCCC T ss_conf 9999999999970905777335788 No 28 >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Probab=96.30 E-value=0.044 Score=29.63 Aligned_cols=166 Identities=12% Similarity=0.116 Sum_probs=95.0 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC-CCCEEEEEEEEEECCCCEE--------------- Q ss_conf 467406998527631156678721489899999875002335555-3110479878863674178--------------- Q gi|254780833|r 166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIP-DVNNVVRSGLVTFSSKIVQ--------------- 229 (371) Q Consensus 166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~--------------- 229 (371) ..+.-.+|++|.|.+--.. .-++.+.+++...++...... ......++|+++|+..... T Consensus 175 ~~pp~~vfvIDvS~~av~~-----g~~~~~~~~l~~~l~~lp~~~~~~~~~~~VglItf~~~v~~~~~~~~~~~~~~~v~ 249 (770) T 3efo_B 175 PNPPAFIFMIDVSYSNIKN-----GLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVV 249 (770) T ss_dssp CCCCEEEEEEECSHHHHHT-----THHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEE T ss_pred CCCCEEEEEEECCHHHHHH-----HHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEEECCEEEEECCCCCCCCCEEEEC T ss_conf 9997899999897577664-----59999999999999856222303677537999981671899557888675403411 Q ss_pred --------------ECCCCCCHHHHHHHHHCCC------CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE Q ss_conf --------------1666558789999974015------68874564237889999874211012346777666169999 Q gi|254780833|r 230 --------------TFPLAWGVQHIQEKINRLI------FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIF 289 (371) Q Consensus 230 --------------~~~lt~~~~~~~~~i~~l~------~~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl 289 (371) ..++......+.+.++.+. ....+....++..+...+.... .+ -|+ ++ T Consensus 250 ~d~~~~~~p~~~~~l~~l~e~~~~i~~~L~~l~~~~~~~~~~~~~~g~Al~~a~~~l~~~~-------~g----Gki-i~ 317 (770) T 3efo_B 250 TDVGEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAAD-------CP----GKL-FI 317 (770) T ss_dssp CCTTSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHT-------CC----EEE-EE T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHCCC-------CC----CEE-EE T ss_conf 5854346556445212089989999999862312205788887438999999999971569-------99----639-99 Q ss_pred EECCCC-CCCCC----------------------CHHHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC--CCCEEE Q ss_conf 840458-88888----------------------978999999999978987999994186-4279899833--898089 Q gi|254780833|r 290 LTDGEN-SSPNI----------------------DNKESLFYCNEAKRRGAIVYAIGVQAE-AADQFLKNCA--SPDRFY 343 (371) Q Consensus 290 ~TDG~~-~~~~~----------------------~~~~~~~~c~~~k~~gi~i~tIg~~~~-~~~~~l~~cA--s~~~~y 343 (371) +++|-+ +.+.. ...--..++..+.+.||.|-.+.+..+ .+-..|..++ |+|+.| T Consensus 318 f~s~~P~~~gpg~l~~r~~~~~~~~~~e~~~~~~~~~fY~~La~~~~~~~isvDlf~~s~~~~~l~~l~~l~~~TGG~v~ 397 (770) T 3efo_B 318 FHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLY 397 (770) T ss_dssp EECSCCCSSSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEE T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEE T ss_conf 96579988887444465432235772234303621799999999999859469999944876787999999986496699 Q ss_pred EECCH Q ss_conf 82898 Q gi|254780833|r 344 SVQNS 348 (371) Q Consensus 344 ~~~~~ 348 (371) ..++. T Consensus 398 ~~~~f 402 (770) T 3efo_B 398 KYNNF 402 (770) T ss_dssp ECTTC T ss_pred EECCC T ss_conf 96898 No 29 >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Probab=94.70 E-value=0.17 Score=26.11 Aligned_cols=181 Identities=12% Similarity=0.112 Sum_probs=98.9 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC-CCCEEEEEEEEEECCCCEE--------------- Q ss_conf 467406998527631156678721489899999875002335555-3110479878863674178--------------- Q gi|254780833|r 166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIP-DVNNVVRSGLVTFSSKIVQ--------------- 229 (371) Q Consensus 166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~--------------- 229 (371) ..+.-.+|++|.|...... .-+..+.+++...++...... ......++|+++|+..... T Consensus 171 ~~pp~~vfvID~S~~a~~~-----g~~~~~~~~i~~~l~~lp~~~~~~~~~~~vglitf~~~v~~~~~~~~~~~~~~~v~ 245 (766) T 3eh2_A 171 PSPPAFIFMIDVSYNAIRT-----GLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVV 245 (766) T ss_dssp CCCCEEEEEEECSHHHHHT-----THHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEE T ss_pred CCCCEEEEEEECCHHHHHH-----HHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEC T ss_conf 9987899999887477665-----48999999999999846122224775248999973877998446786433347640 Q ss_pred --------------ECCCCCCHHHHHHHHHCCCC------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE Q ss_conf --------------16665587899999740156------8874564237889999874211012346777666169999 Q gi|254780833|r 230 --------------TFPLAWGVQHIQEKINRLIF------GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIF 289 (371) Q Consensus 230 --------------~~~lt~~~~~~~~~i~~l~~------~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl 289 (371) ..|+......+.+.++.+.. ...+....++..+...+... ...-|++++ T Consensus 246 ~d~~d~~~p~~~~~l~~~~e~~~~i~~lL~~l~~~~~~~~~~~~~~g~Al~~a~~~l~~~-----------~~gG~ii~f 314 (766) T 3eh2_A 246 SDVADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAA-----------ECAGKLFLF 314 (766) T ss_dssp CCTTTCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHT-----------TCCEEEEEE T ss_pred CCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-----------CCCCCEEEE T ss_conf 573113555665502155888999999987364334688788754799999999997055-----------779848999 Q ss_pred EECCCCCCCCCC----------------------HHHHHHHHHHHHHCCCEEEEEEECCCC-CHHHHHHHC--CCCEEEE Q ss_conf 840458888889----------------------789999999999789879999941864-279899833--8980898 Q gi|254780833|r 290 LTDGENSSPNID----------------------NKESLFYCNEAKRRGAIVYAIGVQAEA-ADQFLKNCA--SPDRFYS 344 (371) Q Consensus 290 ~TDG~~~~~~~~----------------------~~~~~~~c~~~k~~gi~i~tIg~~~~~-~~~~l~~cA--s~~~~y~ 344 (371) .+.|.++.+... ..--..++..+...||.|-.+.++.+. +-..|..++ |+|+.|. T Consensus 315 ~~s~P~t~GpG~l~~~~~~~~~~~~~e~~~~~~~~~fY~~la~~~~~~~isvdlf~~s~~~~dl~~l~~l~~~TGG~v~~ 394 (766) T 3eh2_A 315 HTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYK 394 (766) T ss_dssp ECSCCCSSSTTCCCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEE T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEE T ss_conf 51688778997420443223457620133305625899999999998695799999548765879999998744955999 Q ss_pred ECCH--H-HHHHHHHHHHHHH Q ss_conf 2898--9-9999999999964 Q gi|254780833|r 345 VQNS--R-KLHDAFLRIGKEM 362 (371) Q Consensus 345 ~~~~--~-~L~~af~~I~~~i 362 (371) .++. . +..+....+.+.+ T Consensus 395 ~~~f~~~~~~~~l~~~l~~~~ 415 (766) T 3eh2_A 395 YASFQVENDQERFLSDLRRDV 415 (766) T ss_dssp CTTCCHHHHHHHHHHHHHHHH T ss_pred ECCCCCCCHHHHHHHHHHHHH T ss_conf 689764222789999999975 No 30 >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Probab=94.55 E-value=0.18 Score=25.89 Aligned_cols=174 Identities=17% Similarity=0.098 Sum_probs=102.4 Q ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEE---------------- Q ss_conf 6740699852763115667872148989999987500233555531104798788636741781---------------- Q gi|254780833|r 167 IGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQT---------------- 230 (371) Q Consensus 167 ~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~---------------- 230 (371) .+.-.+|++|.|...... ..+..+.+++...++..... ...++|+++|+...... T Consensus 159 ~pp~~vfvID~S~~a~~~-----g~l~~~~~ai~~~l~~l~~~----~~~~VglItf~~~V~~~~~~~~~~~~~~~v~~d 229 (751) T 3eh1_A 159 QPAVYLFVLDVSHNAVEA-----GYLTILCQSLLENLDKLPGD----SRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSD 229 (751) T ss_dssp CCCEEEEEEECSHHHHHH-----THHHHHHHHHHHHTTTSSCC----TTCEEEEEEESSSEEEEECCTTCSSCEEEEESC T ss_pred CCCEEEEEEECCHHHHHH-----HHHHHHHHHHHHHHHHCCCC----CCEEEEEEEECCEEEEEECCCCCCCCEEEEECC T ss_conf 986899999896578661-----49999999999999747788----760899999899789984689866532674148 Q ss_pred -------------CCCCCCHHHHHHHHHCCCC------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEE Q ss_conf -------------6665587899999740156------887456423788999987421101234677766616999984 Q gi|254780833|r 231 -------------FPLAWGVQHIQEKINRLIF------GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLT 291 (371) Q Consensus 231 -------------~~lt~~~~~~~~~i~~l~~------~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~T 291 (371) .++......+...++.+.. ..++....|+..+...+.. .+ -.|++++ T Consensus 230 ~~~~~~p~~~~~l~~l~e~~~~i~~~L~~L~~~~~~~~~~~~~lg~Al~~a~~~l~~---------~g-----G~i~~f~ 295 (751) T 3eh1_A 230 IDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSP---------TG-----GRVSVFQ 295 (751) T ss_dssp TTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTT---------TC-----EEEEEEE T ss_pred CCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH---------CC-----CEEEEEE T ss_conf 631246787646843799899999999854554148877641089999999998873---------29-----7599995 Q ss_pred CCCCCCCCCC----------------------HHHHHHHHHHHHHCCCEEEEEEECCCC-CHHHHHHHC--CCCEEEEEC Q ss_conf 0458888889----------------------789999999999789879999941864-279899833--898089828 Q gi|254780833|r 292 DGENSSPNID----------------------NKESLFYCNEAKRRGAIVYAIGVQAEA-ADQFLKNCA--SPDRFYSVQ 346 (371) Q Consensus 292 DG~~~~~~~~----------------------~~~~~~~c~~~k~~gi~i~tIg~~~~~-~~~~l~~cA--s~~~~y~~~ 346 (371) +|.+|.|... ..--..++..+.+.||.|-.+.+..+. +-..|..++ |+|..|.-+ T Consensus 296 ~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdif~~s~~~~~l~~l~~l~~~TGG~v~~~~ 375 (751) T 3eh1_A 296 TQLPSLGAGLLQSREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYP 375 (751) T ss_dssp CSCCCSSTTCCCCCCCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECT T ss_pred CCCCCCCCCCEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEC T ss_conf 67997889832126676667854567651405789999999999769479999945877787998889864786599936 Q ss_pred C------HHHHHHHHHHHHHHHH Q ss_conf 9------8999999999999640 Q gi|254780833|r 347 N------SRKLHDAFLRIGKEMV 363 (371) Q Consensus 347 ~------~~~L~~af~~I~~~i~ 363 (371) + ..++...+.++.+.++ T Consensus 376 ~f~~~~~~~~~~~l~~dl~~~l~ 398 (751) T 3eh1_A 376 SFHYTHNPSQAEKLQKDLKRYLT 398 (751) T ss_dssp TCBTTTBHHHHHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHHH T ss_conf 86643365789999999998755 No 31 >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Probab=94.18 E-value=0.22 Score=25.41 Aligned_cols=175 Identities=15% Similarity=0.088 Sum_probs=98.6 Q ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEE---------------- Q ss_conf 6740699852763115667872148989999987500233555531104798788636741781---------------- Q gi|254780833|r 167 IGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQT---------------- 230 (371) Q Consensus 167 ~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~---------------- 230 (371) .+.-.+|++|.|..-... .-+..+.+++...++.+.. .....++|+++|+...... T Consensus 302 ~pp~~vFvIDvS~~av~s-----g~l~~~~~~i~~~L~~l~~---~~~~~~VglItfd~~V~~y~l~~~~~~~~~~~~~~ 373 (926) T 1m2v_B 302 PPATYCFLIDVSQSSIKS-----GLLATTINTLLQNLDSIPN---HDERTRISILCVDNAIHYFKIPLDSENNEESADQI 373 (926) T ss_dssp CCCBEEEEEECSHHHHHS-----CHHHHHHHHHHHTTTTSCC---TTSCCEECEEEESSSEEEEECCCC---------CC T ss_pred CCCEEEEEEECCHHHHHH-----HHHHHHHHHHHHHHHHCCC---CCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCC T ss_conf 984899999898888777-----8999999999999974636---78773699999778489983577777643224675 Q ss_pred --------------------CCCCCCHHHHHHHHHCCCC------CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf --------------------6665587899999740156------88745642378899998742110123467776661 Q gi|254780833|r 231 --------------------FPLAWGVQHIQEKINRLIF------GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYK 284 (371) Q Consensus 231 --------------------~~lt~~~~~~~~~i~~l~~------~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 284 (371) .++...+..+.+.++.|.. ...+....++..+...+.. .++ T Consensus 374 ~~~~~~dl~~~f~p~~~~~l~~l~e~~~~i~~lL~~L~~~~~~~~~~~~~lG~Al~~a~~ll~~---------~gG---- 440 (926) T 1m2v_B 374 NMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG---------VGG---- 440 (926) T ss_dssp EEEEECCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTT---------TCE---- T ss_pred CCCCCCCHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC---------CCC---- T ss_conf 2024101454056787543433688799999999842564068888732399999999998754---------798---- Q ss_pred EEEEEEECCCCCCCCC-------------CHHH----------HHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC--C Q ss_conf 6999984045888888-------------9789----------99999999978987999994186-4279899833--8 Q gi|254780833|r 285 KYIIFLTDGENSSPNI-------------DNKE----------SLFYCNEAKRRGAIVYAIGVQAE-AADQFLKNCA--S 338 (371) Q Consensus 285 k~ivl~TDG~~~~~~~-------------~~~~----------~~~~c~~~k~~gi~i~tIg~~~~-~~~~~l~~cA--s 338 (371) .|+++++|-+|.|.. ..+. -..++..+.+.+|.|-.+.+..+ .+-..|..++ | T Consensus 441 -kI~~f~sg~pt~G~G~l~~r~~~~~~~~~~e~~~~~~~~~~fY~~la~~~~~~~isvdlF~~~~~~~dla~l~~l~~~T 519 (926) T 1m2v_B 441 -KIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFT 519 (926) T ss_dssp -EEEEEESSCCCSSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTT T ss_pred -EEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHC T ss_conf -6999947898778863422555333466034454246217999999999997790799998048767738877777634 Q ss_pred CCEEEEEC-----CHHHHHHHHHHHHHHHH Q ss_conf 98089828-----98999999999999640 Q gi|254780833|r 339 PDRFYSVQ-----NSRKLHDAFLRIGKEMV 363 (371) Q Consensus 339 ~~~~y~~~-----~~~~L~~af~~I~~~i~ 363 (371) +|..|..+ ...+..+.+.++.+.++ T Consensus 520 GG~i~~y~~f~~~~~~d~~~l~~dl~~~~~ 549 (926) T 1m2v_B 520 AGQTHFYPGFSGKNPNDIVKFSTEFAKHIS 549 (926) T ss_dssp TCCEEEEESCCTTSHHHHHHHHHHHHHHHH T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHH T ss_conf 855998178764436778999999997533 No 32 >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Probab=94.01 E-value=0.24 Score=25.20 Aligned_cols=170 Identities=13% Similarity=0.097 Sum_probs=94.7 Q ss_pred CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEEC---------------- Q ss_conf 7406998527631156678721489899999875002335555311047987886367417816---------------- Q gi|254780833|r 168 GLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTF---------------- 231 (371) Q Consensus 168 ~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---------------- 231 (371) +.-.+||+|.|... ..++.+++.+...++.+.. ..++|+++|.......- T Consensus 121 pp~~vFvID~s~~s--------~~l~~l~~sl~~~l~~lp~------~~~VglITf~~~v~~~~l~~~~~~~~~v~~g~~ 186 (768) T 1m2o_A 121 PPIFFFVVDLTSET--------ENLDSLKESIITSLSLLPP------NALIGLITYGNVVQLHDLSSETIDRCNVFRGDR 186 (768) T ss_dssp CCEEEEEEECCSCH--------HHHHHHHHHHHHHHHTSCT------TCEEEEEEESSEEEECCCSSSSSEEEEEEETTS T ss_pred CCEEEEEEECCCCH--------HHHHHHHHHHHHHHHHCCC------CCEEEEEEECCEEEEEECCCCCCCCEEEECCCC T ss_conf 98899999898656--------7899999999999961999------766999994787999988787766303632765 Q ss_pred -------------------------------------------CCCCCHHHHHHHHHCCCCCC---------CCCCCCHH Q ss_conf -------------------------------------------66558789999974015688---------74564237 Q gi|254780833|r 232 -------------------------------------------PLAWGVQHIQEKINRLIFGS---------TTKSTPGL 259 (371) Q Consensus 232 -------------------------------------------~lt~~~~~~~~~i~~l~~~g---------~T~~~~~~ 259 (371) |+......+.+.++.+.... ......++ T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pl~e~~~~i~~lL~~L~~~~~~~~~~~~~~r~~g~Al 266 (768) T 1m2o_A 187 EYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSAL 266 (768) T ss_dssp CCCHHHHHHHHHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHH T ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH T ss_conf 53177776554035666654332346763222355541112466999999999999875303556743245766507899 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC------------HH---------------HHHHHHHHH Q ss_conf 889999874211012346777666169999840458888889------------78---------------999999999 Q gi|254780833|r 260 EYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID------------NK---------------ESLFYCNEA 312 (371) Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~------------~~---------------~~~~~c~~~ 312 (371) ..+...+..... ..+ -.|++++.|.+|.|... .. --..+...+ T Consensus 267 ~~A~~ll~~~~~-----~~G-----grI~~f~sg~pt~GpG~l~~~~~~~~~rs~~d~~~~~~~~~~~a~~fY~~la~~~ 336 (768) T 1m2o_A 267 NIASLLLQGCYK-----NIP-----ARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRV 336 (768) T ss_dssp HHHHHHHHHHCT-----TSC-----CEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHC-----CCC-----CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHH T ss_conf 999999987506-----788-----7899992799987885341444344456644432101220451789999999999 Q ss_pred HHCCCEEEEEEECCCC-CHHHHHHHC--CCCEEEEECCH--HHHHHHHHHHHHH Q ss_conf 9789879999941864-279899833--89808982898--9999999999996 Q gi|254780833|r 313 KRRGAIVYAIGVQAEA-ADQFLKNCA--SPDRFYSVQNS--RKLHDAFLRIGKE 361 (371) Q Consensus 313 k~~gi~i~tIg~~~~~-~~~~l~~cA--s~~~~y~~~~~--~~L~~af~~I~~~ 361 (371) .+.||.|-.+.+..+. +-..|+.|+ |+|..|..++. ..+.+.|....+. T Consensus 337 ~~~~isvDiF~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~~ 390 (768) T 1m2o_A 337 AANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAK 390 (768) T ss_dssp HHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHHHHTTCB T ss_pred HHCCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH T ss_conf 878979999981487667186653775388509970777520128999999865 No 33 >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Probab=91.75 E-value=0.5 Score=23.22 Aligned_cols=177 Identities=15% Similarity=0.070 Sum_probs=99.4 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEE--------------- Q ss_conf 46740699852763115667872148989999987500233555531104798788636741781--------------- Q gi|254780833|r 166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQT--------------- 230 (371) Q Consensus 166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--------------- 230 (371) ..+.-.+|++|.|..-... .-+..+.+++...++.... .....++|+++|+...... T Consensus 185 p~pp~~vFvIDvS~~av~~-----g~l~~~~~~i~~~L~~lp~---~~~~~~Vg~Itfd~~v~~~~l~~~~~~~~~~~~~ 256 (810) T 1pcx_A 185 PPPATYCFLIDVSQSSIKS-----GLLATTINTLLQNLDSIPN---HDERTRISILCVDNAIHYFKIPLDSENNEESADQ 256 (810) T ss_dssp CCCCEEEEEEECSHHHHHH-----THHHHHHHHHHHHTTTSCC---TTSCCEEEEEEESSSEEEEECCCGGGC------- T ss_pred CCCCEEEEEEECCHHHHHH-----HHHHHHHHHHHHHHHHCCC---CCCCEEEEEEEECCCEEEEECCCCCCCCCCCCCC T ss_conf 9985899999897788664-----7999999999998751436---7876059999958828999656777764333344 Q ss_pred ---------------------CCCCCCHHHHHHHHHCCC---C---CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf ---------------------666558789999974015---6---8874564237889999874211012346777666 Q gi|254780833|r 231 ---------------------FPLAWGVQHIQEKINRLI---F---GSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDY 283 (371) Q Consensus 231 ---------------------~~lt~~~~~~~~~i~~l~---~---~g~T~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (371) .++...+..+...++.+. . ...+....+++.+...+.. .++ T Consensus 257 ~~~~~~~dl~~~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~alG~Al~~a~~ll~~---------~gG--- 324 (810) T 1pcx_A 257 INMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG---------VGG--- 324 (810) T ss_dssp CEEECCCCTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTT---------TCE--- T ss_pred CCCCCCCCHHHCCCCCCCCCEEEHHHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHC---------CCC--- T ss_conf 43244444233146787665120689799999999855453169888732299999999998745---------798--- Q ss_pred CEEEEEEECCCCCCCCCCH-----------------------HHHHHHHHHHHHCCCEEEEEEECCC-CCHHHHHHHC-- Q ss_conf 1699998404588888897-----------------------8999999999978987999994186-4279899833-- Q gi|254780833|r 284 KKYIIFLTDGENSSPNIDN-----------------------KESLFYCNEAKRRGAIVYAIGVQAE-AADQFLKNCA-- 337 (371) Q Consensus 284 ~k~ivl~TDG~~~~~~~~~-----------------------~~~~~~c~~~k~~gi~i~tIg~~~~-~~~~~l~~cA-- 337 (371) .|++++.|-+|.|...- .--..++..+.+.||.|-.+.+..+ .+-..|..++ T Consensus 325 --kI~~f~s~~pt~GpG~l~~r~~~~~~~~~~~~~~l~~~~~~fY~~la~~~~~~~isvDlF~~s~~~~dlatl~~l~~~ 402 (810) T 1pcx_A 325 --KIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRF 402 (810) T ss_dssp --EEEEEESSCCCSSTTCCCC--------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHT T ss_pred --EEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHH T ss_conf --699995779867886321045544457734556532537899999999999879359998604777772888888874 Q ss_pred CCCEEEEE-----CCHHHHHHHHHHHHHHHHH Q ss_conf 89808982-----8989999999999996400 Q gi|254780833|r 338 SPDRFYSV-----QNSRKLHDAFLRIGKEMVK 364 (371) Q Consensus 338 s~~~~y~~-----~~~~~L~~af~~I~~~i~~ 364 (371) |+|..|.- ....+..+.+.++.+.++. T Consensus 403 TGG~v~~y~~F~~~~~~d~~~l~~dl~~~l~~ 434 (810) T 1pcx_A 403 TAGQTHFYPGFSGKNPNDIVKFSTEFAKHISM 434 (810) T ss_dssp TTCCEEEEETCCTTSHHHHHHHHHHHHHHHHC T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 58469980686644345789999999986566 No 34 >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Probab=90.18 E-value=0.71 Score=22.32 Aligned_cols=171 Identities=15% Similarity=0.166 Sum_probs=93.9 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEEC-------------- Q ss_conf 467406998527631156678721489899999875002335555311047987886367417816-------------- Q gi|254780833|r 166 DIGLDMMMVLDVSLSMNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTF-------------- 231 (371) Q Consensus 166 ~~~idi~~viD~SgSm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-------------- 231 (371) ..|.-.+||+|.|... ..++.+++.+...++.+.. ..++|+++|.......- T Consensus 130 ~~pp~~vFvID~s~~~--------~~l~~l~~sl~~~l~~lp~------~~~VglITf~~~V~~y~l~~~~~~~~~vf~g 195 (769) T 2nut_A 130 QMPLIFLYVVDTCMED--------EDLQALKESMQMSLSLLPP------TALVGLITFGRMVQVHELGCEGISKSYVFRG 195 (769) T ss_dssp CCCCEEEEEEECCSCH--------HHHHHHHHHHHHHHTTSCT------TCEEEEEEESSEEEEEESSCCSSCEEEEEET T ss_pred CCCCEEEEEEECCCCH--------HHHHHHHHHHHHHHHHCCC------CCEEEEEEECCEEEEEECCCCCCCCCEECCC T ss_conf 9997899999887665--------7899999999999972898------6559999957769999668877663202168 Q ss_pred ----------------------------------------CCCCCHHHHHHHHHCCCCCCC---------CCCCCHHHHH Q ss_conf ----------------------------------------665587899999740156887---------4564237889 Q gi|254780833|r 232 ----------------------------------------PLAWGVQHIQEKINRLIFGST---------TKSTPGLEYA 262 (371) Q Consensus 232 ----------------------------------------~lt~~~~~~~~~i~~l~~~g~---------T~~~~~~~~~ 262 (371) |+......+.+.++.|..... .....++..+ T Consensus 196 ~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~fl~~~~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A 275 (769) T 2nut_A 196 TKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIA 275 (769) T ss_dssp TSCCCSHHHHHHHC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHH T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 75446787765337655665444566534578863310576899999999999985405666643347754407899999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC---------------------------HHHHHHHHHHHHHC Q ss_conf 999874211012346777666169999840458888889---------------------------78999999999978 Q gi|254780833|r 263 YNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID---------------------------NKESLFYCNEAKRR 315 (371) Q Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~k~ivl~TDG~~~~~~~~---------------------------~~~~~~~c~~~k~~ 315 (371) ...+..... ..+ -.|++++.|.+|.|... ..--..++..+... T Consensus 276 ~~ll~~~~~-----~~G-----grI~~F~sg~pt~GpG~l~~~~~~~~~rs~~di~k~~~~~~~~a~~fY~~la~~~~~~ 345 (769) T 2nut_A 276 VGLLECTFP-----NTG-----ARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATT 345 (769) T ss_dssp HHHHHHHSC-----SSC-----CEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCC-----CCC-----CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHC T ss_conf 999986436-----898-----7899994799976885331434343346644543220111460789999999999977 Q ss_pred CCEEEEEEECCC-CCHHHHHHHC--CCCEEEEECC--HHHHHHHHHHHHH Q ss_conf 987999994186-4279899833--8980898289--8999999999999 Q gi|254780833|r 316 GAIVYAIGVQAE-AADQFLKNCA--SPDRFYSVQN--SRKLHDAFLRIGK 360 (371) Q Consensus 316 gi~i~tIg~~~~-~~~~~l~~cA--s~~~~y~~~~--~~~L~~af~~I~~ 360 (371) ||.|-.+.+..+ .+-..|+.|+ |+|..|..++ .....+.|..+.+ T Consensus 346 ~isvDiF~~~~~~~~l~~m~~l~~~TGG~v~~~~~F~~~~~~~~l~~~~~ 395 (769) T 2nut_A 346 GHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFT 395 (769) T ss_dssp TCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTTC T ss_pred CEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHH T ss_conf 95899997157555707576577616846998379860443999999987 No 35 >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Probab=43.57 E-value=12 Score=14.90 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=27.1 Q ss_pred HHHHHHHHCCCEEEEEEECCC-------CCHHHHHHHC--CC-CEEEEECCHHHHHHHHHHHHH Q ss_conf 999999978987999994186-------4279899833--89-808982898999999999999 Q gi|254780833|r 307 FYCNEAKRRGAIVYAIGVQAE-------AADQFLKNCA--SP-DRFYSVQNSRKLHDAFLRIGK 360 (371) Q Consensus 307 ~~c~~~k~~gi~i~tIg~~~~-------~~~~~l~~cA--s~-~~~y~~~~~~~L~~af~~I~~ 360 (371) .++......||++.+|..|.= ..++..+... .| ++ .-.++|+.++..-++. T Consensus 161 ~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R---~~~pedia~~v~fL~S 221 (245) T 1uls_A 161 TLALELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATPLGR---AGKPLEVAYAALFLLS 221 (245) T ss_dssp HHHHHHGGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCTTCS---CBCHHHHHHHHHHHHS T ss_pred HHHHHHHHHCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHC T ss_conf 999996042929999962879870100169999999985699889---9499999999999956 No 36 >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Probab=42.38 E-value=13 Score=14.78 Aligned_cols=54 Identities=6% Similarity=0.092 Sum_probs=27.5 Q ss_pred HHHCCCEEEEEEECCCCCHHHHHHH---------C--CC-CEEEEECCHHHHHHHHHHHHHH----HHHEEEEE Q ss_conf 9978987999994186427989983---------3--89-8089828989999999999996----40007874 Q gi|254780833|r 312 AKRRGAIVYAIGVQAEAADQFLKNC---------A--SP-DRFYSVQNSRKLHDAFLRIGKE----MVKQRILY 369 (371) Q Consensus 312 ~k~~gi~i~tIg~~~~~~~~~l~~c---------A--s~-~~~y~~~~~~~L~~af~~I~~~----i~~~~i~~ 369 (371) ++..||+|.+|..|.- +.+.++.+ . .| ++ .-.++|+.++..-+..+ |+-+.|.+ T Consensus 175 l~~~gIrVN~V~PG~i-~T~~~~~~~~~~~~~~~~~~~pl~R---~g~pediA~~v~fL~S~~s~~itG~~i~V 244 (251) T 1zk4_A 175 LKDYDVRVNTVHPGYI-KTPLVDDLPGAEEAMSQRTKTPMGH---IGEPNDIAYICVYLASNESKFATGSEFVV 244 (251) T ss_dssp HTTCSEEEEEEEECCB-CCHHHHTSTTHHHHHTSTTTCTTSS---CBCHHHHHHHHHHHHSGGGTTCCSCEEEE T ss_pred CCCCCEEEEEEEECCC-CCHHHHCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHCCHHCCCCCCEEEE T ss_conf 0699979999961889-7833430577399999984799789---82999999999999573325966877887 No 37 >2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens} Probab=40.83 E-value=13 Score=14.64 Aligned_cols=39 Identities=21% Similarity=0.069 Sum_probs=28.8 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 875203687189999999999999999999999999999 Q gi|254780833|r 7 RNFFYNCKGSISILTAILLPVIFIVMGLVIETSHKFFVK 45 (371) Q Consensus 7 ~~f~~d~~G~vai~~al~l~~li~~~g~aVD~~r~~~~k 45 (371) +|-.+..+|..+++..|+++.++++.-++|-++.....| T Consensus 41 ~~~p~~~d~~~~~lYIL~vmgffgff~~gImlsyiRSKk 79 (138) T 2k21_A 41 RRSPRSGDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKK 79 (138) T ss_dssp GSCSCCTTCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 668999998522679999999999999999998778875 No 38 >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Probab=35.03 E-value=16 Score=14.08 Aligned_cols=60 Identities=12% Similarity=0.162 Sum_probs=31.9 Q ss_pred HHHHHHHHCCCEEEEEEECCC----------CCHHHH----HHHCCC-CEEEEECCHHHHHHHHHHHHHH----HHHEEE Q ss_conf 999999978987999994186----------427989----983389-8089828989999999999996----400078 Q gi|254780833|r 307 FYCNEAKRRGAIVYAIGVQAE----------AADQFL----KNCASP-DRFYSVQNSRKLHDAFLRIGKE----MVKQRI 367 (371) Q Consensus 307 ~~c~~~k~~gi~i~tIg~~~~----------~~~~~l----~~cAs~-~~~y~~~~~~~L~~af~~I~~~----i~~~~i 367 (371) .++..+...||+|.+|..|.- .+.... +....+ ++ .-.++|+.++.--++.+ |+-+.| T Consensus 180 ~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~gR---~~~pediA~~v~fL~Sd~s~~itG~~i 256 (278) T 2bgk_A 180 SLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGT---LLRAEDVADAVAYLAGDESKYVSGLNL 256 (278) T ss_dssp HHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSCSC---CCCHHHHHHHHHHHHSGGGTTCCSCEE T ss_pred HHHHHHHHHCCEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCC---CCCHHHHHHHHHHHHCCHHCCCCCCEE T ss_conf 99998625490999996198987466543027878999999743465789---819999999999996714359668668 Q ss_pred EE Q ss_conf 74 Q gi|254780833|r 368 LY 369 (371) Q Consensus 368 ~~ 369 (371) .+ T Consensus 257 ~V 258 (278) T 2bgk_A 257 VI 258 (278) T ss_dssp EE T ss_pred EE T ss_conf 86 No 39 >2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans} Probab=33.07 E-value=18 Score=13.89 Aligned_cols=22 Identities=5% Similarity=0.048 Sum_probs=11.3 Q ss_pred HHHHHHH-HHHHHHHHHEEEEEE Q ss_conf 9999999-999996400078741 Q gi|254780833|r 349 RKLHDAF-LRIGKEMVKQRILYN 370 (371) Q Consensus 349 ~~L~~af-~~I~~~i~~~~i~~~ 370 (371) .++.+-. +.|.++|..=.|.++ T Consensus 271 ~~~~~~i~d~i~~~I~~G~i~v~ 293 (296) T 2hqb_A 271 DEVREQITDAISTYIQTGQFPHE 293 (296) T ss_dssp HHHHHHHHHHHHHHHHSCCCCC- T ss_pred HHHHHHHHHHHHHHHHCCCCCCC T ss_conf 99999999999868666986488 No 40 >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase; 2.09A {Bartonella henselae str} PDB: 3enn_A 3emk_A Probab=30.79 E-value=19 Score=13.66 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=32.3 Q ss_pred HHHHHHHHCCCEEEEEEECCCC-------CHHHHHHHC--CC-CEEEEECCHHHHHHHHHHHHHH----HHHEEEEE Q ss_conf 9999999789879999941864-------279899833--89-8089828989999999999996----40007874 Q gi|254780833|r 307 FYCNEAKRRGAIVYAIGVQAEA-------ADQFLKNCA--SP-DRFYSVQNSRKLHDAFLRIGKE----MVKQRILY 369 (371) Q Consensus 307 ~~c~~~k~~gi~i~tIg~~~~~-------~~~~l~~cA--s~-~~~y~~~~~~~L~~af~~I~~~----i~~~~i~~ 369 (371) .++......||++.+|..|.-. .++..+... .| ++ .-.++|+.++..-++.+ |+-+.|.+ T Consensus 186 ~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R---~~~pediA~~v~fL~Sd~s~~iTG~~i~V 259 (266) T 3grp_A 186 ALAQEIASRNITVNCIAPGFIKSAMTDKLNEKQKEAIMAMIPMKR---MGIGEEIAFATVYLASDEAAYLTGQTLHI 259 (266) T ss_dssp HHHHHHGGGTEEEEEEEECSBCSHHHHTCCHHHHHHHHTTCTTCS---CBCHHHHHHHHHHHHSGGGTTCCSCEEEE T ss_pred HHHHHHCCCCEEEEEEEECCCCCCCHHCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHCCHHCCCCCCEEEE T ss_conf 999996624928999960888872001039999999985699889---96999999999999571225976865997 No 41 >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* Probab=27.82 E-value=13 Score=14.70 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=35.5 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECC-CCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH Q ss_conf 7899999999997898799999418-6427989983389808982898999999999999640 Q gi|254780833|r 302 NKESLFYCNEAKRRGAIVYAIGVQA-EAADQFLKNCASPDRFYSVQNSRKLHDAFLRIGKEMV 363 (371) Q Consensus 302 ~~~~~~~c~~~k~~gi~i~tIg~~~-~~~~~~l~~cAs~~~~y~~~~~~~L~~af~~I~~~i~ 363 (371) ......+++.++++||-+..|.+-. +.++..||-|.+..| .-++-+.+.++|+++.+++. T Consensus 356 ~~~~~~~~~~L~~~Gi~v~~i~~Ptvp~g~~rlR~~~~a~h--T~edId~~v~~l~~v~~~lg 416 (427) T 2w8t_A 356 QEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEH--TPAQIQTVLGMFQAAGRAVG 416 (427) T ss_dssp HHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTC--CHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCC--CHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999848945976789988999725999847669--99999999999999999829 No 42 >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Probab=25.94 E-value=24 Score=13.14 Aligned_cols=50 Identities=10% Similarity=0.019 Sum_probs=25.8 Q ss_pred HHHHHHHHCCCEEEEEEECCCCCHHHHHH----HC-CC-CEEEEECCHHHHHHHHHHHHH Q ss_conf 99999997898799999418642798998----33-89-808982898999999999999 Q gi|254780833|r 307 FYCNEAKRRGAIVYAIGVQAEAADQFLKN----CA-SP-DRFYSVQNSRKLHDAFLRIGK 360 (371) Q Consensus 307 ~~c~~~k~~gi~i~tIg~~~~~~~~~l~~----cA-s~-~~~y~~~~~~~L~~af~~I~~ 360 (371) .++......||++.+|..|.- +.+..+. .. .+ ++ .-.++|+.++..-++. T Consensus 166 ~lA~el~~~gIrVN~I~PG~i-~T~~~~~~~~~~~~~pl~R---~~~pediA~~v~fL~S 221 (260) T 1nff_A 166 STALELGPSGIRVNSIHPGLV-KTPMTDWVPEDIFQTALGR---AAEPVEVSNLVVYLAS 221 (260) T ss_dssp HHHHHHGGGTEEEEEEEECCB-CSGGGTTSCTTCSCCSSSS---CBCHHHHHHHHHHHHS T ss_pred HHHHHHHHHCEEEEEEEECCC-CCCHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHC T ss_conf 999985042949999960888-8733555168897334468---8799999999999967 No 43 >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Probab=23.25 E-value=27 Score=12.83 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=30.2 Q ss_pred HHHHHHHHCCCEEEEEEECCCCCHHHHH---------HHCC--C-CEEEEECCHHHHHHHHHHHHHH----HHHEEEEE Q ss_conf 9999999789879999941864279899---------8338--9-8089828989999999999996----40007874 Q gi|254780833|r 307 FYCNEAKRRGAIVYAIGVQAEAADQFLK---------NCAS--P-DRFYSVQNSRKLHDAFLRIGKE----MVKQRILY 369 (371) Q Consensus 307 ~~c~~~k~~gi~i~tIg~~~~~~~~~l~---------~cAs--~-~~~y~~~~~~~L~~af~~I~~~----i~~~~i~~ 369 (371) .+...+...||++.+|..|.- +.+.++ .... | ++ .-.++|+.++..-++.+ |+-+.|.+ T Consensus 187 ~lA~el~~~gIrVN~I~PG~v-~T~~~~~~~~~~~~~~~~~~~pl~R---~~~pediA~~v~fL~S~~s~~itG~~i~V 261 (266) T 3o38_A 187 CSAIEAVEFGVRINAVSPSIA-RHKFLEKTSSSELLDRLASDEAFGR---AAEPWEVAATIAFLASDYSSYMTGEVVSV 261 (266) T ss_dssp HHHHHHGGGTEEEEEEEECCC-CC-----------------CCTTSS---CCCHHHHHHHHHHHHSGGGTTCCSCEEEE T ss_pred HHHHHHHHHCEEEEEEECCCC-CCCHHHCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHCCHHCCCCCCEEEE T ss_conf 999986041938999978778-8700103489999999973799789---84999999999999570437976856886 No 44 >2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* Probab=23.22 E-value=27 Score=12.82 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=14.0 Q ss_pred HHHHHHHHHHHHHHHHHEEEEE Q ss_conf 8999999999999640007874 Q gi|254780833|r 348 SRKLHDAFLRIGKEMVKQRILY 369 (371) Q Consensus 348 ~~~L~~af~~I~~~i~~~~i~~ 369 (371) +.++.+..+++.++|..=.|.+ T Consensus 288 ~~~~~~~v~~~~~~I~~G~i~V 309 (318) T 2fqx_A 288 SSAVMEKIRSFEEKIVSKEIVV 309 (318) T ss_dssp CHHHHHHHHHHHHHHHHTSSCC T ss_pred CHHHHHHHHHHHHHHHCCCCCC T ss_conf 9999999999998887792078 No 45 >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3- hydroxybutyryl-COA dehydrogenase, MHBD; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Probab=22.71 E-value=27 Score=12.76 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=27.6 Q ss_pred HHHHHHHHCCCEEEEEEECCCC-------CHHHHHHHCC----CCEEEEECCHHHHHHHHHHHHH Q ss_conf 9999999789879999941864-------2798998338----9808982898999999999999 Q gi|254780833|r 307 FYCNEAKRRGAIVYAIGVQAEA-------ADQFLKNCAS----PDRFYSVQNSRKLHDAFLRIGK 360 (371) Q Consensus 307 ~~c~~~k~~gi~i~tIg~~~~~-------~~~~l~~cAs----~~~~y~~~~~~~L~~af~~I~~ 360 (371) .++......||++.+|..|.-. .++..+.... .++ .-+++|+.+++.-+.. T Consensus 183 ~lA~ela~~gIrVN~I~PG~i~T~~~~~~~e~~~~~~~~~~pl~~R---~g~peevA~~v~fL~s 244 (265) T 2o23_A 183 PIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPFPSR---LGDPAEYAHLVQAIIE 244 (265) T ss_dssp HHHHHHGGGTEEEEEEEECCBCCC----------CHHHHTCSSSCS---CBCHHHHHHHHHHHHH T ss_pred HHHHHHCCCCEEEEEEECCCCCCCHHHHCCHHHHHHHHHCCCCCCC---CCCHHHHHHHHHHHHH T ss_conf 9999956409778897018715812230899999999955998889---8299999999999986 No 46 >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Probab=22.37 E-value=28 Score=12.72 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=31.4 Q ss_pred HHHHHHHHCCCEEEEEEECCC-------CCHHHHHHHC--CC-CEEEEECCHHHHHHHHHHHHHH----HHHEEEEE Q ss_conf 999999978987999994186-------4279899833--89-8089828989999999999996----40007874 Q gi|254780833|r 307 FYCNEAKRRGAIVYAIGVQAE-------AADQFLKNCA--SP-DRFYSVQNSRKLHDAFLRIGKE----MVKQRILY 369 (371) Q Consensus 307 ~~c~~~k~~gi~i~tIg~~~~-------~~~~~l~~cA--s~-~~~y~~~~~~~L~~af~~I~~~----i~~~~i~~ 369 (371) .+..+....||++.+|..|.- ..++..+... .| ++ .-.++|+.++..-+..+ |+-+.|.+ T Consensus 168 ~la~e~~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R---~~~pedvA~~v~fL~S~~s~~itG~~i~v 241 (248) T 3op4_A 168 SMAREVASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQVPAGR---LGDPREIASAVAFLASPEAAYITGETLHV 241 (248) T ss_dssp HHHHHHGGGTEEEEEEEECSBSSTTTTTSCHHHHHHHHHTCTTCS---CBCHHHHHHHHHHHHSGGGTTCCSCEEEE T ss_pred HHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHCCHHCCCCCCEEEE T ss_conf 889986324908999951989773331049999999985699889---85999999999999582225976886997 No 47 >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Probab=22.27 E-value=28 Score=12.71 Aligned_cols=60 Identities=15% Similarity=0.085 Sum_probs=31.5 Q ss_pred HHHHHHHHCCCEEEEEEECCCC---------CHHHHHHHC--CC-CEEEEECCHHHHHHHHHHHHHH----HHHEEEEE Q ss_conf 9999999789879999941864---------279899833--89-8089828989999999999996----40007874 Q gi|254780833|r 307 FYCNEAKRRGAIVYAIGVQAEA---------ADQFLKNCA--SP-DRFYSVQNSRKLHDAFLRIGKE----MVKQRILY 369 (371) Q Consensus 307 ~~c~~~k~~gi~i~tIg~~~~~---------~~~~l~~cA--s~-~~~y~~~~~~~L~~af~~I~~~----i~~~~i~~ 369 (371) .++......||+|.+|..|.-. +.+.++... .| ++ .-.++|+.++..-++.+ |+-+.|.+ T Consensus 195 ~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R---~g~pedvA~~v~fL~S~~s~~iTG~~i~V 270 (276) T 2b4q_A 195 MLAKELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASIPMGR---WGRPEEMAALAISLAGTAGAYMTGNVIPI 270 (276) T ss_dssp HHHHHHGGGTEEEEEEEECCCCSTTTHHHHHCHHHHHHHHHTSTTSS---CCCHHHHHHHHHHHHSGGGTTCCSCEEEE T ss_pred HHHHHHCCCCEEEEEEECCCCCCHHHHHHCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHCCHHCCCCCCEEEE T ss_conf 99999661581899996486987778641479999999985699889---80999999999999673226976874867 No 48 >2qip_A Protein of unknown function VPA0982; APC85975, structural genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus rimd 2210633} Probab=22.21 E-value=28 Score=12.70 Aligned_cols=52 Identities=23% Similarity=0.437 Sum_probs=33.5 Q ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEEECCCCCHHHHHHHCCCCEEEEECC Q ss_conf 616999984045888888978999999999978-98799999418642798998338980898289 Q gi|254780833|r 283 YKKYIIFLTDGENSSPNIDNKESLFYCNEAKRR-GAIVYAIGVQAEAADQFLKNCASPDRFYSVQN 347 (371) Q Consensus 283 ~~k~ivl~TDG~~~~~~~~~~~~~~~c~~~k~~-gi~i~tIg~~~~~~~~~l~~cAs~~~~y~~~~ 347 (371) ...++++=.||+ -..+.+.++++ |.+|..+|+....+.. |+.+| ++|+..++ T Consensus 109 ~d~~vLvSgDsD----------f~p~v~~lr~~~gk~V~v~~~~~~~s~~-L~~~a--d~fi~id~ 161 (165) T 2qip_A 109 VDRVILVSGDGD----------FSLLVERIQQRYNKKVTVYGVPRLTSQT-LIDCA--DNFVAIDD 161 (165) T ss_dssp CSEEEEECCCGG----------GHHHHHHHHHHHCCEEEEEECGGGSCHH-HHHHS--SEEEECSG T ss_pred CCEEEEEECCHH----------HHHHHHHHHHHCCCEEEEEECCCCCCHH-HHHHC--CEEEECCC T ss_conf 898999957762----------8999999998589789999789988399-99869--98899173 No 49 >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Probab=22.17 E-value=28 Score=12.70 Aligned_cols=54 Identities=11% Similarity=0.039 Sum_probs=26.4 Q ss_pred HHHHHHH--HCCCEEEEEEECCCCCHHHHHHHCCCC--------EEEEECCHHHHHHHHHHHHHH Q ss_conf 9999999--789879999941864279899833898--------089828989999999999996 Q gi|254780833|r 307 FYCNEAK--RRGAIVYAIGVQAEAADQFLKNCASPD--------RFYSVQNSRKLHDAFLRIGKE 361 (371) Q Consensus 307 ~~c~~~k--~~gi~i~tIg~~~~~~~~~l~~cAs~~--------~~y~~~~~~~L~~af~~I~~~ 361 (371) .++.+++ ..||++.+|..|.-. .+..+...... -.-..-.++|+.++.--++.+ T Consensus 200 ~la~El~~~~~gIrvn~I~PG~v~-T~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~fL~S~ 263 (279) T 1xg5_A 200 GLRQELREAQTHIRATCISPGVVE-TQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEAVIYVLST 263 (279) T ss_dssp HHHHHHHHTTCCCEEEEEEESCBC-SSHHHHHTTTCHHHHHHHHC---CBCHHHHHHHHHHHHHS T ss_pred HHHHHHHHCCCCEEEEEEEECCCC-CHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 999999858999899999718698-8655521602299998438788882999999999999687 No 50 >3imf_A Short chain dehydrogenase; structural genomics, infectious diseases, center for structural genomics of infectious diseases, oxidoreductase; HET: MSE; 1.99A {Bacillus anthracis str} Probab=21.91 E-value=28 Score=12.66 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=29.7 Q ss_pred HHHHH-HHCCCEEEEEEECCC---CC-------HHHHHHHC--CC-CEEEEECCHHHHHHHHHHHHHH----HHHEEEEE Q ss_conf 99999-978987999994186---42-------79899833--89-8089828989999999999996----40007874 Q gi|254780833|r 308 YCNEA-KRRGAIVYAIGVQAE---AA-------DQFLKNCA--SP-DRFYSVQNSRKLHDAFLRIGKE----MVKQRILY 369 (371) Q Consensus 308 ~c~~~-k~~gi~i~tIg~~~~---~~-------~~~l~~cA--s~-~~~y~~~~~~~L~~af~~I~~~----i~~~~i~~ 369 (371) ++... .+.||++.+|..|.- .. ++..+... .| ++ .-.++|+.++..-++.+ |+-+.|.+ T Consensus 170 lA~ela~~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~~pl~R---~g~pedia~~v~fL~S~~a~~itG~~i~V 246 (257) T 3imf_A 170 LAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSVPLGR---LGTPEEIAGLAYYLCSDEAAYINGTCMTM 246 (257) T ss_dssp HHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTTSTTCS---CBCHHHHHHHHHHHHSGGGTTCCSCEEEE T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHCCHHCCCCCCEEEE T ss_conf 999966755918999953878572033223599999999984699889---85999999999999683225976865887 No 51 >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Probab=21.71 E-value=28 Score=12.64 Aligned_cols=20 Identities=10% Similarity=-0.002 Sum_probs=14.3 Q ss_pred HHHHHHHHCCCEEEEEEECC Q ss_conf 99999997898799999418 Q gi|254780833|r 307 FYCNEAKRRGAIVYAIGVQA 326 (371) Q Consensus 307 ~~c~~~k~~gi~i~tIg~~~ 326 (371) .++..+...||+|.+|..|. T Consensus 188 ~lA~ela~~gIrVN~V~PG~ 207 (277) T 3gvc_A 188 ITAAELRSSGIRSNTLLPAF 207 (277) T ss_dssp HHHHHHGGGTEEEEEEEECS T ss_pred HHHHHHHHHCEEEEEEEECC T ss_conf 99998604191999996288 No 52 >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protein structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Probab=21.01 E-value=29 Score=12.55 Aligned_cols=53 Identities=19% Similarity=0.085 Sum_probs=29.2 Q ss_pred HHHHHHHHHCCCEEEEEEECCC-------CCHHHHHHHC--CC-CEEEEECCHHHHHHHHHHHHHH Q ss_conf 9999999978987999994186-------4279899833--89-8089828989999999999996 Q gi|254780833|r 306 LFYCNEAKRRGAIVYAIGVQAE-------AADQFLKNCA--SP-DRFYSVQNSRKLHDAFLRIGKE 361 (371) Q Consensus 306 ~~~c~~~k~~gi~i~tIg~~~~-------~~~~~l~~cA--s~-~~~y~~~~~~~L~~af~~I~~~ 361 (371) ..++..+...||+|.+|..|.- ..++..+... .| ++ .-.++|+.++.--++.+ T Consensus 161 k~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R---~g~p~eiA~~v~fL~S~ 223 (263) T 2a4k_A 161 RTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPLGR---AGRPEEVAQAALFLLSE 223 (263) T ss_dssp HHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTSTTCS---CBCHHHHHHHHHHHHSG T ss_pred HHHHHHHHHHCCEEEEEEECCCCCHHHCCCCHHHHHHHHHCCCCCC---CCCHHHHHHHHHHHHCC T ss_conf 9999986141909999962889871000499899999971799889---84999999999999573 No 53 >1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Probab=20.89 E-value=30 Score=12.53 Aligned_cols=50 Identities=22% Similarity=0.110 Sum_probs=27.6 Q ss_pred HHHHHHHHHHH-CCCEEEEEEECCCC--CHHHHHHHC--CCCEEEEECCHHHHHH Q ss_conf 99999999997-89879999941864--279899833--8980898289899999 Q gi|254780833|r 304 ESLFYCNEAKR-RGAIVYAIGVQAEA--ADQFLKNCA--SPDRFYSVQNSRKLHD 353 (371) Q Consensus 304 ~~~~~c~~~k~-~gi~i~tIg~~~~~--~~~~l~~cA--s~~~~y~~~~~~~L~~ 353 (371) +++..+-.-+. .++++-+|--..-+ -+..|+.+| +++.++.-+...+|.+ T Consensus 66 eaL~~Lv~N~~~g~l~v~aVkaP~fG~~r~~~L~DlAi~tGa~vi~~~~g~~l~~ 120 (145) T 1srv_A 66 EALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLEN 120 (145) T ss_dssp HHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGG T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCHHHHHCCCEEECCCCCCCCCC T ss_conf 9999999998608817999939998655555442535313988862546745354 No 54 >1k2w_A Sorbitol dehydrogenase; short-chain dehydrogenase, enzyme, oxidoreductase; 2.40A {Rhodobacter sphaeroides} SCOP: c.2.1.2 Probab=20.58 E-value=30 Score=12.50 Aligned_cols=20 Identities=25% Similarity=0.037 Sum_probs=14.5 Q ss_pred HHHHHHHHCCCEEEEEEECC Q ss_conf 99999997898799999418 Q gi|254780833|r 307 FYCNEAKRRGAIVYAIGVQA 326 (371) Q Consensus 307 ~~c~~~k~~gi~i~tIg~~~ 326 (371) .++......||+|.+|..|. T Consensus 165 ~lA~el~~~gIrVN~I~PG~ 184 (256) T 1k2w_A 165 SAGLNLIRHGINVNAIAPGV 184 (256) T ss_dssp HHHHHHGGGTEEEEEEEECC T ss_pred HHHHHHHHHCEEEEEEECCC T ss_conf 99999736591799984387 Done!