BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780833|ref|YP_003065246.1| hypothetical protein
CLIBASIA_03630 [Candidatus Liberibacter asiaticus str. psy62]
(371 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 371
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/371 (100%), Positives = 371/371 (100%)
Query: 1 MSFLNIRNFFYNCKGSISILTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSLLYTA 60
MSFLNIRNFFYNCKGSISILTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSLLYTA
Sbjct: 1 MSFLNIRNFFYNCKGSISILTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSLLYTA 60
Query: 61 TKILNQENGNNGKKQKNDFSYRIIKNIWQTDFRNELRENGFAQDINNIERSTSLSIIIDD 120
TKILNQENGNNGKKQKNDFSYRIIKNIWQTDFRNELRENGFAQDINNIERSTSLSIIIDD
Sbjct: 61 TKILNQENGNNGKKQKNDFSYRIIKNIWQTDFRNELRENGFAQDINNIERSTSLSIIIDD 120
Query: 121 QHKDYNLSAVSRYEMPFIFCTFPWCANSSHAPLLITSSVKISSKSDIGLDMMMVLDVSLS 180
QHKDYNLSAVSRYEMPFIFCTFPWCANSSHAPLLITSSVKISSKSDIGLDMMMVLDVSLS
Sbjct: 121 QHKDYNLSAVSRYEMPFIFCTFPWCANSSHAPLLITSSVKISSKSDIGLDMMMVLDVSLS 180
Query: 181 MNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHI 240
MNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHI
Sbjct: 181 MNDHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHI 240
Query: 241 QEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNI 300
QEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNI
Sbjct: 241 QEKINRLIFGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNI 300
Query: 301 DNKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCASPDRFYSVQNSRKLHDAFLRIGK 360
DNKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCASPDRFYSVQNSRKLHDAFLRIGK
Sbjct: 301 DNKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCASPDRFYSVQNSRKLHDAFLRIGK 360
Query: 361 EMVKQRILYNK 371
EMVKQRILYNK
Sbjct: 361 EMVKQRILYNK 371
>gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 374
Score = 408 bits (1048), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/370 (54%), Positives = 273/370 (73%), Gaps = 3/370 (0%)
Query: 4 LNIRNFFYNCKGSISILTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSLLYTATKI 63
LNIRNFFYN KG ++ILTAI LP+IF+V+G++IE SH FF+K LH ++D SL++ AT+I
Sbjct: 6 LNIRNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQI 65
Query: 64 LNQENGNNGKKQKNDFSYRIIKNIWQTDFRNELRENGFAQDINNIERSTSLSIIIDDQHK 123
+N+ NGNN KK K IKN W FRNELR+NGF DI++I RSTSL I++ Q++
Sbjct: 66 MNEGNGNNRKKLKGGDILCRIKNTWNMSFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNE 125
Query: 124 DYNLSAVSRYEMPFIFCTF-PWCANSSHAPLLITSSVKISSKSDIGLDMMMVLDVSLSMN 182
Y++SA+SRY++P FCTF PW NS H + ITSSVK++S++D LDMM+VLDVS SM
Sbjct: 126 GYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVLDVSRSME 185
Query: 183 DHFGPGMDKLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQE 242
F + K+ +A +SI ML+ +K IPDVNNVV+SGLVTFS+KI + F L WGV H+Q
Sbjct: 186 SFFDSSITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEEFFLLEWGVSHLQR 245
Query: 243 KINRLI-FGSTTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNID 301
KI L FG +T STPGL+YAYN+IFD + +H +YKK I+F+TDGEN S +
Sbjct: 246 KIKYLSKFGVSTNSTPGLKYAYNQIFDMQGMRQHCNTEDANYKKIIVFMTDGENLSTK-E 304
Query: 302 NKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCASPDRFYSVQNSRKLHDAFLRIGKE 361
+++SL+YCNEAK+RGAIVYAIG++ + +FL+ CASP+ FY V+N ++DAF IGK+
Sbjct: 305 DQQSLYYCNEAKKRGAIVYAIGIRVIRSHEFLRACASPNSFYLVENPHSMYDAFSHIGKD 364
Query: 362 MVKQRILYNK 371
+V +RI Y+K
Sbjct: 365 IVTKRIWYDK 374
>gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 398
Score = 94.7 bits (234), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/401 (22%), Positives = 185/401 (46%), Gaps = 62/401 (15%)
Query: 20 LTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSLLYTATKILNQENGNNGKKQKNDF 79
+TAI++ V F+ + I+ +H +++ ++ LD ++L I++ + +K+
Sbjct: 1 MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT 60
Query: 80 SYRIIKNIWQTDFRNELRENGF-AQDINNIERSTSLSIIIDDQHK-DYNLSAVSRYEMP- 136
S I++ + L++ + ++ +I + ++I D + Y + ++YE+P
Sbjct: 61 S-----TIFKKQIKKHLKQGSYIRENAGDIAQKAQINITKDKNNPLQYIAESKAQYEIPT 115
Query: 137 ---FIFCTFPWCANSSHAPLLITSSVKISSKSDIGLDMMMVLDVSLSMNDHF-------- 185
F+ P ++ L T ++ SS+ ++ + + MVLDVS SM D +
Sbjct: 116 ENLFLKGLIPSAL--TNLSLRSTGIIERSSE-NLAISICMVLDVSRSMEDLYLQKHNDNN 172
Query: 186 -------------------------------GPGMDKLGVATRSIREMLDII-KSIPDVN 213
P K+ V S +++ I K+I +
Sbjct: 173 NMTSNKYLLPPPPKKSFWSKNTTKSKYAPAPAPANRKIDVLIESAGNLVNSIQKAIQEKK 232
Query: 214 NV-VRSGLVTFSSKIV--QTFPLAWGVQHIQEKINRLIFGSTTKSTPGLEYAYNKIFDAK 270
N+ VR G + ++ IV Q PL+ + ++ ++N+L T + P + +AY ++++ K
Sbjct: 233 NLSVRIGTIAYNIGIVGNQCTPLSNNLNEVKSRLNKLNPYENTNTYPAMHHAYRELYNEK 292
Query: 271 EKLEHIAKGHDDYKKYIIFLTDGENSSPNI--DNKESLFYCNEAKRRGAIVYAIGVQAEA 328
E H G KK++IF+TDGENS + + +L C + G +Y++ V A
Sbjct: 293 ES-SHNTIGSTRLKKFVIFITDGENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPP 351
Query: 329 ADQ-FLKNCA-SPDRFYSVQNSRKLHDAFLRIGKEMVKQRI 367
Q L+ C S +F++V +SR+L ++F +I ++ +Q +
Sbjct: 352 EGQDLLRKCTDSSGQFFAVNDSRELLESFDKITDKIQEQSV 392
>gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 458
Score = 92.0 bits (227), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 16/178 (8%)
Query: 206 IKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINRLI------FGSTTKSTPGL 259
IK I +VN+ VR G F+ +++ +WGV + I + GST + +
Sbjct: 285 IKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAIND-AM 343
Query: 260 EYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIV 319
+ AY+ I + E H K + + KKYI+ LTDGEN+ DN+E + CN+AK +G +
Sbjct: 344 QTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQ---DNEEGIAICNKAKSQGIRI 400
Query: 320 YAIG-----VQAEAADQFLKNCASPDRFYSVQNSRKLHDAFL-RIGKEMVKQRILYNK 371
I Q E A FL NCASP+ F+ ++ +L+ F RIG E+ ++ I K
Sbjct: 401 MTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIGNEIFERVIRITK 458
Score = 40.4 bits (93), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 12 NCKGSISILTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSLLYTATKILNQENGNN 71
+C G I+TA+L+PV+ V G++++ + + L +++ TA+ L Q
Sbjct: 17 SCTGHFFIITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAII-TASVPLIQSLEEV 75
Query: 72 GKKQKNDFSY--RIIKNIWQTDFRNELRENGFAQDINNIERSTSLSIIIDDQHKDYNLSA 129
+ KN F++ + I+ +F N L++N +++ +I R T++ ++ + Y +
Sbjct: 76 SSRAKNSFTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAVE--MNPRKSAYQVVL 133
Query: 130 VSRYEMPFIFCTFPWCANSSHAPLLIT----SSVKISSKSDIGLDMMMVLDVSLSMNDH 184
SRY++ + + + L+ T +V S + G+ + V+D S SM D+
Sbjct: 134 SSRYDLLLNPLSLFLRSMGIKSWLIQTKAEAETVSRSYHKEHGVSIQWVIDFSRSMLDY 192
>gi|254781110|ref|YP_003065523.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 420
Score = 64.7 bits (156), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 15/189 (7%)
Query: 191 KLGVATRSIREMLDIIKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINR---- 246
K+ ++ LD I + V V GL+ +++++ + +WG + +++ + R
Sbjct: 227 KMAALKNALLLFLDSIDLLSHVKEDVYMGLIGYTTRVEKNIEPSWGTEKVRQYVTRDMDS 286
Query: 247 LIFGSTTKSTPGLEYAYNKIFDAKEK-------LEHIAKGHDDYKKYIIFLTDGENSSPN 299
LI T STP ++ AY + K++ + + ++K+IIFLTDGEN++
Sbjct: 287 LIL-KPTDSTPAMKQAYQILTSDKKRSFFTNFFRQGVKIPSLPFQKFIIFLTDGENNNFK 345
Query: 300 IDNKESLFYCNEAKRRGAIVYAIGVQAEAADQ-FLKNC-ASPDRFYSVQNSRKLHDAFLR 357
N ++ C++AK + I + A Q LK C +SP+ Y+V N+ L F
Sbjct: 346 -SNVNTIKICDKAKENFIKIVTISINASPNGQRLLKTCVSSPEYHYNVVNADSLIHVFQN 404
Query: 358 IGKEMVKQR 366
I + MV ++
Sbjct: 405 ISQLMVHRK 413
>gi|254780978|ref|YP_003065391.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Candidatus
Liberibacter asiaticus str. psy62]
Length = 493
Score = 27.3 bits (59), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 185 FGPGMDKLGVATRSIREMLDIIKSI 209
F P +D+ G+ TR++R+ ++K+I
Sbjct: 211 FAPSLDQAGIITRTVRDSAILLKAI 235
>gi|254780535|ref|YP_003064948.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 247
Score = 26.9 bits (58), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 269 AKEKLEHIAKGHDDYKKYIIF 289
++EKLE +AK DD ++++F
Sbjct: 39 SQEKLEKVAKNFDDVDRFLLF 59
>gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 442
Score = 25.4 bits (54), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 77 NDFSYRIIKNIWQTDFRNELRENG 100
N + +I+NIWQ+ +R ++ +G
Sbjct: 230 NRYELSLIENIWQSRYRRQMMISG 253
>gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 518
Score = 25.0 bits (53), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 101 FAQDINNIERSTSLSIIIDDQ 121
F QDINN+E +++ IIDD
Sbjct: 408 FHQDINNLENVSAILNIIDDS 428
>gi|255764469|ref|YP_003064807.2| putative permease protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 361
Score = 24.6 bits (52), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1 MSFLNIRNFFYNCKGSISILTAILLPVIFIVMGLV 35
MSF N N F+N + I++P++ + M L+
Sbjct: 256 MSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLI 290
>gi|254780263|ref|YP_003064676.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus
str. psy62]
Length = 392
Score = 24.6 bits (52), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 286 YIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQA 326
YI+ ++G ++ +DN F+ + A G I+ + G QA
Sbjct: 308 YILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQA 348
>gi|254780150|ref|YP_003064563.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus
str. psy62]
Length = 392
Score = 24.6 bits (52), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 286 YIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQA 326
YI+ ++G ++ +DN F+ + A G I+ + G QA
Sbjct: 308 YILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQA 348
>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1775
Score = 24.3 bits (51), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 99 NGFAQDINNIERSTSLSIIIDDQHKDYNLSAVSRYEMPF 137
N +AQ+IN I ++T LSI H+ +A R+ +P
Sbjct: 524 NQYAQEINQIWKNTELSI-----HQILMGAARYRHNLPL 557
>gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus
str. psy62]
Length = 509
Score = 23.5 bits (49), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 21/116 (18%)
Query: 232 PLAWGVQHIQEKI------NRLIFGS--TTKSTPGLEYAYNKIFDAKEKLEHIAKGHDDY 283
PL+ G++ I I LI G T K++ L+ N +K H KG +
Sbjct: 145 PLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFLN------QKSSH-DKGSEKD 197
Query: 284 KKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYAIGVQAEAADQFLKNCASP 339
K Y I++ G+ S + + RGA+ Y+I V A A+D +P
Sbjct: 198 KVYCIYVAIGQKRS------SVARFVKALEDRGALSYSIVVVASASDPAPMQLLAP 247
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 241,213
Number of Sequences: 1233
Number of extensions: 10238
Number of successful extensions: 54
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 22
length of query: 371
length of database: 328,796
effective HSP length: 75
effective length of query: 296
effective length of database: 236,321
effective search space: 69951016
effective search space used: 69951016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)