HHsearch alignment for GI: 254780834 and conserved domain: PHA02031
>PHA02031 putative DnaG-like primase.
Probab=99.13 E-value=4.5e-10 Score=112.23 Aligned_cols=165 Identities=21% Similarity=0.287 Sum_probs=116.2
Q ss_pred CCHHHHHHHCCCCCHHHHHH-HCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEEC---CCCCCCC
Q ss_conf 41034554205997345232-0121003465410000167168889707785888501001465530010---3876765
Q gi|254780834|r 166 RYSLREHLRQKGFSEEKIIE-AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL---NSPETIL 241 (648)
Q Consensus 166 ~~~l~~~l~~~~~~~~~~~~-~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYl---NSpeT~i 241 (648)
T Consensus 93 ~~~iy~~ll~Kgi~~~~~~~~l~l---------y~S~r~~Rlilp~~~g------W~gRs~~-~~~PKW~gYg~p~~--- 153 (274)
T PHA02031 93 YQSLYGLLLSKGIDYNVMTPGLPL---------LYSERQHRLIFPTDAG------WIGRATA-DQNPKWVGYGYPAP--- 153 (274)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCC---------HHHHHCCEEEEECCCC------HHHHCCC-CCCCCCCCCCCCCC---
T ss_conf 777655421046555546775332---------0021068389753430------3121115-67873003799973---
Q ss_pred CCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCC----CCHHHHHCCCCHHHHHHHHH-CCCE
Q ss_conf 352101108178888643310000235678708997143889998743554----21134321366267898851-2681
Q gi|254780834|r 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ----NVVSSLGTALTEYQLRLLWK-LSPR 316 (648)
Q Consensus 242 f~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~----n~va~~Gtalt~~~~~~l~r-~~~~ 316 (648)
T Consensus 154 -----~~~~~~~~~-------------~~g~~~VLTE---D~lSA~KV~~a~~~~~A~alLGT~L~~~~AA~Llq~~~k~ 212 (274)
T PHA02031 154 -----DYHGWPQEL-------------SMGRPWVLTE---DYLSALKVRWACPEVFAVGLNGTRLRDRLAAIMLQQTCKR 212 (274)
T ss_pred -----CCCCCCCCC-------------CCCCCEEEEH---HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCC
T ss_conf -----313434223-------------7887279754---5554554431036412321105653368999999844995
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHH
Q ss_conf 8996178866225777888888777536973067525788888899720366889988641
Q gi|254780834|r 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377 (648)
Q Consensus 317 vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~ 377 (648)
T Consensus 213 V~~wLD~D~AG~~Ga~~i~k~LR~~---gl~~~~~~~~~~~DPKd~~----~~qI~~ii~g 266 (274)
T PHA02031 213 AFIFLDGDPAGVRGSAGVMRRLRSL---LIEGQVIHTPDGFDPKDLT----REQIRSLVIG 266 (274)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHH---HCCCEEEECCCCCCCCCCC----HHHHHHHHCC
T ss_conf 7999569831213589999998874---0512256247789922089----9999999746