HHsearch alignment for GI: 254780834 and conserved domain: PHA02031

>PHA02031 putative DnaG-like primase.
Probab=99.13  E-value=4.5e-10  Score=112.23  Aligned_cols=165  Identities=21%  Similarity=0.287  Sum_probs=116.2

Q ss_pred             CCHHHHHHHCCCCCHHHHHH-HCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEEC---CCCCCCC
Q ss_conf             41034554205997345232-0121003465410000167168889707785888501001465530010---3876765
Q gi|254780834|r  166 RYSLREHLRQKGFSEEKIIE-AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL---NSPETIL  241 (648)
Q Consensus       166 ~~~l~~~l~~~~~~~~~~~~-~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYl---NSpeT~i  241 (648)
T Consensus        93 ~~~iy~~ll~Kgi~~~~~~~~l~l---------y~S~r~~Rlilp~~~g------W~gRs~~-~~~PKW~gYg~p~~---  153 (274)
T PHA02031         93 YQSLYGLLLSKGIDYNVMTPGLPL---------LYSERQHRLIFPTDAG------WIGRATA-DQNPKWVGYGYPAP---  153 (274)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCC---------HHHHHCCEEEEECCCC------HHHHCCC-CCCCCCCCCCCCCC---
T ss_conf             777655421046555546775332---------0021068389753430------3121115-67873003799973---


Q ss_pred             CCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCC----CCHHHHHCCCCHHHHHHHHH-CCCE
Q ss_conf             352101108178888643310000235678708997143889998743554----21134321366267898851-2681
Q gi|254780834|r  242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ----NVVSSLGTALTEYQLRLLWK-LSPR  316 (648)
Q Consensus       242 f~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~----n~va~~Gtalt~~~~~~l~r-~~~~  316 (648)
T Consensus       154 -----~~~~~~~~~-------------~~g~~~VLTE---D~lSA~KV~~a~~~~~A~alLGT~L~~~~AA~Llq~~~k~  212 (274)
T PHA02031        154 -----DYHGWPQEL-------------SMGRPWVLTE---DYLSALKVRWACPEVFAVGLNGTRLRDRLAAIMLQQTCKR  212 (274)
T ss_pred             -----CCCCCCCCC-------------CCCCCEEEEH---HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCC
T ss_conf             -----313434223-------------7887279754---5554554431036412321105653368999999844995


Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHH
Q ss_conf             8996178866225777888888777536973067525788888899720366889988641
Q gi|254780834|r  317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE  377 (648)
Q Consensus       317 vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~  377 (648)
T Consensus       213 V~~wLD~D~AG~~Ga~~i~k~LR~~---gl~~~~~~~~~~~DPKd~~----~~qI~~ii~g  266 (274)
T PHA02031        213 AFIFLDGDPAGVRGSAGVMRRLRSL---LIEGQVIHTPDGFDPKDLT----REQIRSLVIG  266 (274)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHH---HCCCEEEECCCCCCCCCCC----HHHHHHHHCC
T ss_conf             7999569831213589999998874---0512256247789922089----9999999746