HHsearch alignment for GI: 254780834 and conserved domain: PHA02415
>PHA02415 DNA primase domain-containing protein.
Probab=99.68 E-value=8.7e-14 Score=146.42 Aligned_cols=314 Identities=20% Similarity=0.305 Sum_probs=206.4
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEEC---CCC-EEEECCCCCCCCHHHHHHHHC
Q ss_conf 8999998748888875412221015887777755753458888587879817---897-467136888878989989885
Q gi|254780834|r 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND---SKG-FYYCFSCHVKGDHLSFLSALL 81 (648)
Q Consensus 6 ~~i~~i~~~~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~---~~~-~~~cf~c~~~gd~~~f~~~~~ 81 (648)
T Consensus 2 as~dqLK~~IDLhdLA~R-Lgl~R-~~~G~~~~Y--hsP~h~Dk~pSlSIf~nh~~~g~~WkDhs~~~gGSciDLV~~~r 77 (930)
T PHA02415 2 ATIDELKQRIDLHDLADR-LGLKR-GRGGDKALY--HSPQHEDKSPSLSIYVNHPKHGTGWRDHSADAGGSCIDLVIHAR 77 (930)
T ss_pred CCHHHHHHCCCHHHHHHH-HCCCC-CCCCCCCCC--CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 657888610669889998-47603-689985555--69988888985578734743576423356788974678888606
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHC----CC
Q ss_conf 99979999999998188587768203677788999999999999999997326777578999985068853510----12
Q gi|254780834|r 82 GCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIE----MF 157 (648)
Q Consensus 82 ~~~f~ea~~~la~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~----~f 157 (648)
T Consensus 78 ~~~~~dA~k~L~d~ygiP~~~pA~~~---~~~kSt~e----yIA---erc~a~~--~~a~aYLagRGI~~av~~~ai~~~ 145 (930)
T PHA02415 78 GGTVADAVRYLHDAYGIPLDRPAPAE---RREKSTVE----YIA---DRCLAER--ERVREYLGGRGISAAAIDAAFAAR 145 (930)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCC---CCCCCHHH----HHH---HHHHCCC--HHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 99889999998897579988876200---24313799----999---8873261--256777621796389999999846
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEEC-CCCEEEEECCCCCCCCC--CEEC
Q ss_conf 44225677410345542059973452320121003465410000167168889707-78588850100146553--0010
Q gi|254780834|r 158 KLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS-RGQVIAFGGRTLSKGES--VKYL 234 (648)
Q Consensus 158 ~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~-~g~~i~f~gR~l~~~~~--~KYl 234 (648)
T Consensus 146 ~lG~n--~WtS~kv~-------------aGe~G--hgG--P------AaaFivr~~~~~~VvaVDlRy~DPAlNG~vKTq 200 (930)
T PHA02415 146 SLGFN--TWTSSKVA-------------AGEVG--HAG--P------AAAFIVREPADGRVVAVDMRYVDPALNGGVKTQ 200 (930)
T ss_pred CCCCC--CCCCCCCC-------------CCCCC--CCC--C------CEEEEEECCCCCCEEEEEEEECCCCCCCCCCCC
T ss_conf 57635--45676778-------------98878--787--5------135577227887379987112270016885210
Q ss_pred CCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCC--HHHHHCCCCHHHHHHHHH
Q ss_conf 387676535210110817888864331000023567870899714388999874355421--134321366267898851
Q gi|254780834|r 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV--VSSLGTALTEYQLRLLWK 312 (648)
Q Consensus 235 NSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~--va~~Gtalt~~~~~~l~r 312 (648)
T Consensus 201 ~qG-----eK~G~gwt~D~~rL--~----------rA~~VyiVESpINAlSi~~c~~pg~aa~alRG~aNvd~-IDwsfl 262 (930)
T PHA02415 201 TQG-----DKAGYGWTADARRL--D----------KAKRVFIVESAINALSIDTCAMPGAAALALRGLANVDA-IDFSSL 262 (930)
T ss_pred CCC-----CCCCCCCCCCHHHH--H----------HCCEEEEEECCCHHHHHHHHCCCCCEEEEEECCCCCCC-CCHHHH
T ss_conf 145-----44577876798888--3----------27489998245014436663389830133104455553-110111
Q ss_pred CCCEEEEEECCCC------------CCHHHHHHHHHHHHHHHHCCCCEEEEEC-------CCC-------CCHHHHHHCC
Q ss_conf 2681899617886------------6225777888888777536973067525-------788-------8888997203
Q gi|254780834|r 313 LSPRIVLCFDGDD------------PGLRAAYKAIDLVLCHLIPGNRVNFVLL-------SRG-------EDPDSFIRCY 366 (648)
Q Consensus 313 ~~~~vvl~fDgD~------------AG~kAa~Ra~e~~l~~l~~g~~v~vv~L-------P~G-------~DPDe~ir~~ 366 (648)
T Consensus 263 rGKrvvi~lD~~dp~~e~~pr~g~RPG~eAAW~l~E~lta~---~I~~~LVD~~~W~~gl~~~e~~~~~i~DiND~Lq~~ 339 (930)
T PHA02415 263 RGKQVVICLDNDEPFEDGHPRAGHRPGPEAAWALYERLASL---NISAVLVDQAGWLADLADGETKQQPINDVNDYLQLR 339 (930)
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCCCEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 58769999368875445785447898778899999988763---853124516544324554422235510278999971
Q ss_pred CHHHHHHHHHHCCCH
Q ss_conf 668899886414992
Q gi|254780834|r 367 GKTAFEKLIVESLPL 381 (648)
Q Consensus 367 G~eaf~~ll~~A~~l 381 (648)
T Consensus 340 Ga~el~~~l~~lepW 354 (930)
T PHA02415 340 GPEELARALEQLEPW 354 (930)
T ss_pred CHHHHHHHHHHCCCC
T ss_conf 789999999724411