HHsearch alignment for GI: 254780834 and conserved domain: PRK04031
>PRK04031 DNA primase; Provisional.
Probab=98.43 E-value=1.8e-06 Score=79.13 Aligned_cols=102 Identities=27% Similarity=0.420 Sum_probs=78.4
Q ss_pred CCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHC-CCCE
Q ss_conf 787089971438899987435542113432136626789885126818996178866225777888888777536-9730
Q gi|254780834|r 270 SSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP-GNRV 348 (648)
Q Consensus 270 ~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~-g~~v 348 (648)
T Consensus 167 ~sd~iIvVEGRaDV~nLLk~GikN~ia~~G~~ip~~i~~L~~~--k~vtaF~DGDr--------GG~liLKELlqVadID 236 (420)
T PRK04031 167 DSDAIIVVEGRADVLNLLRYGIKNVIAVEGTSVPETIIELSKK--KTVTAFLDGDR--------GGELILKELLQVADID 236 (420)
T ss_pred CCCEEEEEECHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCC--CEEEEEECCCC--------CHHHHHHHHHHHCCEE
T ss_conf 8880899956588999987363327862688888899998638--65899953885--------4378999998546735
Q ss_pred EEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHH
Q ss_conf 6752578888889972036688998864149927999
Q gi|254780834|r 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDML 385 (648)
Q Consensus 349 ~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l~dFl 385 (648)
T Consensus 237 YVArAP~GKEVEeLT~K----EI~KALR~KVP~eq~~ 269 (420)
T PRK04031 237 YVARAPPGKEVEELTKK----EIAKALRNKVPVEQYL 269 (420)
T ss_pred EEEECCCCCCHHHCCHH----HHHHHHHCCCCHHHHH
T ss_conf 99979899635326887----9999987248889998