HHsearch alignment for GI: 254780834 and conserved domain: PRK04031

>PRK04031 DNA primase; Provisional.
Probab=98.43  E-value=1.8e-06  Score=79.13  Aligned_cols=102  Identities=27%  Similarity=0.420  Sum_probs=78.4

Q ss_pred             CCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHC-CCCE
Q ss_conf             787089971438899987435542113432136626789885126818996178866225777888888777536-9730
Q gi|254780834|r  270 SSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP-GNRV  348 (648)
Q Consensus       270 ~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~-g~~v  348 (648)
T Consensus       167 ~sd~iIvVEGRaDV~nLLk~GikN~ia~~G~~ip~~i~~L~~~--k~vtaF~DGDr--------GG~liLKELlqVadID  236 (420)
T PRK04031        167 DSDAIIVVEGRADVLNLLRYGIKNVIAVEGTSVPETIIELSKK--KTVTAFLDGDR--------GGELILKELLQVADID  236 (420)
T ss_pred             CCCEEEEEECHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCC--CEEEEEECCCC--------CHHHHHHHHHHHCCEE
T ss_conf             8880899956588999987363327862688888899998638--65899953885--------4378999998546735


Q ss_pred             EEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHH
Q ss_conf             6752578888889972036688998864149927999
Q gi|254780834|r  349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDML  385 (648)
Q Consensus       349 ~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l~dFl  385 (648)
T Consensus       237 YVArAP~GKEVEeLT~K----EI~KALR~KVP~eq~~  269 (420)
T PRK04031        237 YVARAPPGKEVEELTKK----EIAKALRNKVPVEQYL  269 (420)
T ss_pred             EEEECCCCCCHHHCCHH----HHHHHHHCCCCHHHHH
T ss_conf             99979899635326887----9999987248889998