HHsearch alignment for GI: 254780834 and conserved domain: TIGR00646
>TIGR00646 MG010 DNA primase homolog; InterPro: IPR004611 The DNA primase DnaG of Escherichia coli and its apparent orthologs in other bacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein found in this family, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown..
Probab=98.43 E-value=1e-06 Score=81.42 Aligned_cols=197 Identities=22% Similarity=0.299 Sum_probs=141.4
Q ss_pred HHHHHHHHHCCC---CCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCC
Q ss_conf 999999973267---77578999985068853510124422567741034554205997345232012100346541000
Q gi|254780834|r 124 ATDFFHHSLKNA---RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 (648)
Q Consensus 124 ~~~~~~~~l~~~---~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d 200 (648)
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~ggg~~---------~~--------------------------- 54 (218)
T TIGR00646 11 LFFVYHKNLKNQSKSKYRCPVNYLKKRGFNLQDLLKVGGGLG---------YL--------------------------- 54 (218)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCHH---------HC---------------------------
T ss_conf 666554210100012455567777632775356654044200---------00---------------------------
Q ss_pred CCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCH
Q ss_conf 01671688897077858885010014655300103876765352101108178888643310000235678708997143
Q gi|254780834|r 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGY 280 (648)
Q Consensus 201 ~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy 280 (648)
T Consensus 55 ~~~~w~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~p~~~pp~~~~~~~g~~~~~~-------------~~~~~~~~~gd 119 (218)
T TIGR00646 55 GEKEWLNLPLYNFDGNLVGFLNRKVGF--EKEFLYLPFNKPPSKSEAFLGLKELPT-------------EDNTIYLVEGD 119 (218)
T ss_pred CCCCCCCCEEECCCCCCHHHHHHHCCC--CCCEEECCCCCCCCCCHHHHHHHHHCC-------------CCCEEEEEECC
T ss_conf 342100000001366101122211011--100022146788541012310122000-------------25505886166
Q ss_pred HHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHC-CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CC
Q ss_conf 889998743554211343213662678988512-6818996178866225777888888777536973067525788-88
Q gi|254780834|r 281 MDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG-ED 358 (648)
Q Consensus 281 ~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~-~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G-~D 358 (648)
T Consensus 120 ~dw~~~~~~g~~~~~p~cg~~~~~~~~~~~~~~~~~~~~~c~d~d~~g~~~~~~~~~~---~~~~g~~~~~~~~~~~~~d 196 (218)
T TIGR00646 120 FDWLAFRKGGILNCLPLCGLTLSDKQVKWLKQKKIEKVFLCLDNDLAGKNGAKNLEEY---LKNAGFITKVVELKGKAKD 196 (218)
T ss_pred CHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH---HHHCCCEEEHHHHHHHHCC
T ss_conf 2011221033100000103100203566655411004566523530000235568888---7404731210002100012
Q ss_pred HHHHHHCCCHHHHHHHH
Q ss_conf 88997203668899886
Q gi|254780834|r 359 PDSFIRCYGKTAFEKLI 375 (648)
Q Consensus 359 PDe~ir~~G~eaf~~ll 375 (648)
T Consensus 197 w~~~~~~~-~~~w~~~~ 212 (218)
T TIGR00646 197 WNDLLLLY-PKNWAKAL 212 (218)
T ss_pred CCCEEEEC-CCCHHHHH
T ss_conf 00012421-64045666