HHsearch alignment for GI: 254780834 and conserved domain: pfam01807
>pfam01807 zf-CHC2 CHC2 zinc finger. This domain is principally involved in DNA binding in DNA primases.
Probab=99.96 E-value=2.5e-28 Score=280.14 Aligned_cols=96 Identities=46% Similarity=0.823 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHCC
Q ss_conf 78889999987488888754122210158877777557534588885878798178974671368888789899898859
Q gi|254780834|r 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLG 82 (648)
Q Consensus 3 i~~~~i~~i~~~~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd~~~f~~~~~~ 82 (648)
T Consensus 1 I~~~~I~~ik~~~~i~~vv~~~v~L~~~G~~-----~~~~CPFH~ek~PS~~V~~~k~~f~CF~Cg~~Gd~i~fv~~~e~ 75 (98)
T pfam01807 1 IPEESIDDLKNRIDIVDIIGQYVKLKKKGRD-----YKGLCPFHDEKTPSFSVSPDKQFYHCFGCGAGGDAISFLMKIDK 75 (98)
T ss_pred CCHHHHHHHHHHCCHHHHHHHCCEEEECCCC-----EEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHHC
T ss_conf 9889999999859999998622516888986-----58879988999982799769996997789999767878998859
Q ss_pred CCHHHHHHHHHHHHCCCCCCC
Q ss_conf 997999999999818858776
Q gi|254780834|r 83 CSFIESVQRLAAIAGVPLPVV 103 (648)
Q Consensus 83 ~~f~ea~~~la~~~gi~~~~~ 103 (648)
T Consensus 76 ~~f~eAv~~LA~~~gi~l~~~ 96 (98)
T pfam01807 76 LSFVEAVKKLADRAGIDLPYE 96 (98)
T ss_pred CCHHHHHHHHHHHHCCCCCCC
T ss_conf 799999999999969988876