HHsearch alignment for GI: 254780834 and conserved domain: pfam08278
>pfam08278 DnaG_DnaB_bind DNA primase DnaG DnaB-binding. Eubacterial DnaG primases interact with several factors to from the replisome. One of these factors in DnaB, a helicase. This domain has been demonstrated to be responsible for the interaction between DnaG and DnaB.
Probab=96.36 E-value=0.16 Score=33.69 Aligned_cols=109 Identities=19% Similarity=0.165 Sum_probs=75.5
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999847788999984430023799889999999999975388999899998851112899999999986543332
Q gi|254780834|r 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563 (648)
Q Consensus 484 E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~elL~~L~~~~~~~~~~ 563 (648)
T Consensus 2 ~r~ai~LLLq~P~LA~~v~~~~~l~~~~~~~~~-lL~~L~~~~~~~P~~~t~~Lle~~r~t~~~~~L~~La~~~------ 74 (126)
T pfam08278 2 MRRAIALLLQNPALAALVPDLLALEDLKDPGLA-LLLELVELCRGNPNINTGQLLEHWRGTPYGELLAKLATWE------ 74 (126)
T ss_pred HHHHHHHHHHCHHHHHHCCCHHHHHHCCCHHHH-HHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCC------
T ss_conf 899999998694987568774544115670289-9999999998589985999999970991799999998642------
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0256899889999999999999858999999999999998
Q gi|254780834|r 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 (648)
Q Consensus 564 ~~~~e~~~~d~~e~~~~~l~l~~r~~~L~r~l~ele~~l~ 603 (648)
T Consensus 75 ---~~~~~~~~~~ef~d~l~~L~~~-~~~~r~~~L~~k~~ 110 (126)
T pfam08278 75 ---HLIDEDNIEQEFDDTLARLQEQ-LLERRIEELIAKSR 110 (126)
T ss_pred ---CCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf ---2466067999999999999999-99999999998774