HHsearch alignment for GI: 254780834 and conserved domain: smart00493

>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=98.75  E-value=2.1e-08  Score=96.93  Aligned_cols=68  Identities=34%  Similarity=0.468  Sum_probs=63.0

Q ss_pred             EEEEECCHHHHHHHHHCCC--CCCHHHHHCCCCHHHHHHHHHCCCE--EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             0899714388999874355--4211343213662678988512681--899617886622577788888877
Q gi|254780834|r  273 FIILVEGYMDVLSLCQAGV--QNVVSSLGTALTEYQLRLLWKLSPR--IVLCFDGDDPGLRAAYKAIDLVLC  340 (648)
Q Consensus       273 ~~i~vEGy~Dvi~l~~~G~--~n~va~~Gtalt~~~~~~l~r~~~~--vvl~fDgD~AG~kAa~Ra~e~~l~  340 (648)
T Consensus         2 ~liIVEg~~d~~~i~~~~~~~~~~~~~~G~~~~~~~i~~l~~~~~~~eViiatD~D~eGe~~a~~i~~~l~~   73 (76)
T smart00493        2 VLIIVEGPADAIALEKAGGFGGNVVALGGHLLKKEIIKLLKRLAKKKEVILATDPDREGEAIAWKLAELLKP   73 (76)
T ss_pred             EEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             799987888999999856999799982152350448999998633897999769894469999999998776