HHsearch alignment for GI: 254780834 and conserved domain: smart00493
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=98.75 E-value=2.1e-08 Score=96.93 Aligned_cols=68 Identities=34% Similarity=0.468 Sum_probs=63.0
Q ss_pred EEEEECCHHHHHHHHHCCC--CCCHHHHHCCCCHHHHHHHHHCCCE--EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 0899714388999874355--4211343213662678988512681--899617886622577788888877
Q gi|254780834|r 273 FIILVEGYMDVLSLCQAGV--QNVVSSLGTALTEYQLRLLWKLSPR--IVLCFDGDDPGLRAAYKAIDLVLC 340 (648)
Q Consensus 273 ~~i~vEGy~Dvi~l~~~G~--~n~va~~Gtalt~~~~~~l~r~~~~--vvl~fDgD~AG~kAa~Ra~e~~l~ 340 (648)
T Consensus 2 ~liIVEg~~d~~~i~~~~~~~~~~~~~~G~~~~~~~i~~l~~~~~~~eViiatD~D~eGe~~a~~i~~~l~~ 73 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGFGGNVVALGGHLLKKEIIKLLKRLAKKKEVILATDPDREGEAIAWKLAELLKP 73 (76)
T ss_pred EEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 799987888999999856999799982152350448999998633897999769894469999999998776