HHsearch alignment of GI: 254780834 and MMDB domain: 1dd9_A_1-145
>1dd9_A (A:1-145) DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein; HET: DNA; 1.60A {Escherichia coli}
Probab=99.96 E-value=3.5e-30 Score=296.65 Aligned_cols=145 Identities=34% Similarity=0.638 Sum_probs=133.9
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 81885877682036777889999999999999999973267775789999850688535101244225677410345542
Q gi|254780834|r 95 IAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 (648)
Q Consensus 95 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~ 174 (648)
.|||++|... ..++..+++.++++++.|++|||.+|+++.+++|++||.+|||++++|+.|+|||||.+|+.|..++.
T Consensus 1 ~~gi~l~~~~--~~~~~~~~~~l~~~~~~a~~~y~~~L~~~~~~~a~~YL~~Rgl~~~~i~~F~lGyap~~~~~l~~~~~ 78 (145)
T 1dd9_A 1 MRGSHHHHHH--GSGSMHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFG 78 (145)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHTSGGGHHHHHHHHHTTCCHHHHHHHTCEEECSSSCHHHHHHC
T ss_pred CCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 9875445667--88767799999999999999999996897408999999977989999986512547655799999987
Q ss_pred CCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCCCC
Q ss_conf 059973452320121003465410000167168889707785888501001465530010387676535
Q gi|254780834|r 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 (648)
Q Consensus 175 ~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~if~ 243 (648)
++|++.++|.++||+..+++|. +||+|+|||||||+|..|+|||||||+|+++ .|||||||||++|+
T Consensus 79 ~~~~~~~~l~~~GL~~~~~~g~-~~d~F~~RiifPI~d~~G~vvgF~gR~l~~~-~pKYlNspet~iF~ 145 (145)
T 1dd9_A 79 GNPENRQSLIDAGMLVTNDQGR-SYDRFRERVMFPIRDKRGRVIGFGGRVLGND-TPKYLNSPETDIFH 145 (145)
T ss_dssp SSHHHHHHHHHTTSEEEC---C-EEESCCSEEEEEEECTTSCEEEEEEEESSSC-SCSEEECCCCSSCC
T ss_pred HCCCCHHHHHHCCCEEECCCCC-CHHHHCCEEEEEEECCCCEEEEEEEEECCCC-CCCCCCCCCCCCCC
T ss_conf 5798767787547734346533-0122223268888516621899931231666-43245788754544