HHsearch alignment of GI: 254780834 and MMDB domain: 1dd9_A_146-285
>1dd9_A (A:146-285) DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein; HET: DNA; 1.60A {Escherichia coli}
Probab=99.82 E-value=8.7e-20 Score=200.98 Aligned_cols=139 Identities=35% Similarity=0.683 Sum_probs=132.0
Q ss_pred CCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECC
Q ss_conf 21011081788886433100002356787089971438899987435542113432136626789885126818996178
Q gi|254780834|r 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDG 323 (648)
Q Consensus 244 K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDg 323 (648)
||+.|||++.+.+.+++ .++++||||++|+++++++|+.++|+++|+++|..|+..|.+..++|++|||+
T Consensus 1 K~~~lyg~~~~~~~~~~----------~~~v~i~EG~~Dals~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~D~ 70 (140)
T 1dd9_A 1 KGRQLYGLYEAQQDNAE----------PNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDG 70 (140)
T ss_dssp TTTCCBTHHHHHHTCSS----------CSCEEEESSHHHHHHHHHTTCCCEEECCC-CCCHHHHHHHHHHCSEEEEEEES
T ss_pred CHHHCCCHHHHHHHCCC----------CCCEEEEECHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf 20211325554321155----------65259995579899998715234401331021178999987407745787536
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 866225777888888777536973067525788888899720366889988641499279999999853
Q gi|254780834|r 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETEN 392 (648)
Q Consensus 324 D~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l~dFl~~~l~~~ 392 (648)
|.||++++.++...+..+...+..+++..+|+|+||+|+++++|.++|.++++++.|+.+|+++.+.++
T Consensus 71 D~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kD~nd~~~~~g~e~~~~~i~~a~~~~~~~~~~~~~~ 139 (140)
T 1dd9_A 71 DRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQ 139 (140)
T ss_dssp SHHHHHHHHHHHHHHGGGCCTTCEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 620216788589987687359973899980589988999885177999999862888999999999855