HHsearch alignment of GI: 254780834 and MMDB domain: 1t6t_1_
>1t6t_1 (1:) Putative protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.80A {Aquifex aeolicus VF5}
Probab=99.70 E-value=6.6e-18 Score=183.71 Aligned_cols=114 Identities=29% Similarity=0.227 Sum_probs=105.0
Q ss_pred CHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 10110817888864331000023567870899714388999874355421134321366267898851268189961788
Q gi|254780834|r 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGD 324 (648)
Q Consensus 245 ~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD 324 (648)
+++|||++++++.++.. ..+++|||||++||++|+++|++||||++|+++++.|+..|+++ .+||+|||+|
T Consensus 2 ~e~lygl~~~~~~~~~~--------~~~~viIvEG~~Dalsl~~~G~~~~va~~g~~~~~~~~~~l~~~-~~vii~~D~D 72 (118)
T 1t6t_1 2 TKEPRNLSEWIKELKKA--------SREAVILVEGKNDKKALSKFSIKNVIDLSGKRYADVVDXLEGKW-EKVILLFDLD 72 (118)
T ss_dssp ---CCSHHHHHHHHHHH--------TTTSEEEESSHHHHHHHHTTTCCCEEECTTSCHHHHHHHHTTTC-SEEEECCCSS
T ss_pred CCCHHHHHHHHHHHHHC--------CCCCEEEEECHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHCC-CCEEEEECCC
T ss_conf 71034089999999981--------79968998145999999983412324128875458999998348-9269984898
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCH
Q ss_conf 662257778888887775369730675257888888997203668899886414992
Q gi|254780834|r 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 (648)
Q Consensus 325 ~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l 381 (648)
.||++++.+.++. ++|+|+|||++++++|++++..+++++.+.
T Consensus 73 ~~G~~~~~~~~~~--------------l~~~g~D~~~~~~~~g~~~~~~~i~~a~~~ 115 (118)
T 1t6t_1 73 THGERINQKXKEL--------------LSSQGFLVDENFRNFLKKWNIIHIEEINGG 115 (118)
T ss_dssp HHHHHHHHHHHHH--------------HHHTTCEEECHHHHHHHHTTCCCGGGC---
T ss_pred HHHHHHHHHHHHH--------------HHHCCCEEEHHHHHHHHHHCHHHHHHHHCC
T ss_conf 8899999999999--------------998699442459999988486999865476