HHsearch alignment of GI: 254780834 and MMDB domain: 2au3_A_225-349
>2au3_A (A:225-349) DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=99.79 E-value=1.1e-18 Score=190.74 Aligned_cols=124 Identities=45% Similarity=0.770 Sum_probs=117.3
Q ss_pred CCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEE
Q ss_conf 35210110817888864331000023567870899714388999874355421134321366267898851268189961
Q gi|254780834|r 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCF 321 (648)
Q Consensus 242 f~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~f 321 (648)
|+|++.|||++.++..+++. ++++||||++|+++++|+|++++|+++||+++..|+..+.+..++||||+
T Consensus 1 f~k~~~lygl~~~~~~~~~~----------~~v~i~EG~~dals~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~vvi~~ 70 (125)
T 2au3_A 1 FKKGENLFGLYEAKEYIKEE----------GFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQNQANLLSKFTKKVYILY 70 (125)
T ss_dssp CCGGGCEETHHHHHHHHHHH----------TCEEECSSHHHHHHHHHTTCCSEEEESSSSCCHHHHHHHHTTCSEEEEEC
T ss_pred ECCCCCCCCCHHHHHHHCCC----------CCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 03464444410122210134----------41033046235678876186553343123433688988761277236742
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHC
Q ss_conf 788662257778888887775369730675257888888997203668899886414
Q gi|254780834|r 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES 378 (648)
Q Consensus 322 DgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A 378 (648)
|+|.||++|+.+....+ ...+..++++.+|+++|++|+++++|.+++++++++|
T Consensus 71 D~D~aG~~~a~~~~~~l---~~~~~~~~~~~~p~~kD~nD~l~~~g~e~l~~~l~~a 124 (125)
T 2au3_A 71 DGDDAGRKAMKSAIPLL---LSAGVEVYPVYLPEGYDPDEFIKEFGKEELRRLINSS 124 (125)
T ss_dssp CSSHHHHHHHHHHHHHH---HHTTCEEEEECCCTTCCHHHHHHHHCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCHHHHHHHCCHHHHHHHHHCC
T ss_conf 78677775578877654---0236521366589998849999864999999999668