HHsearch alignment of GI: 254780834 and MMDB domain: 2au3_A_96-224
>2au3_A (A:96-224) DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=99.95 E-value=8.6e-28 Score=274.63 Aligned_cols=127 Identities=32% Similarity=0.573 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCC
Q ss_conf 77889999999999999999973267775789999850688535101244225677410345542059973452320121
Q gi|254780834|r 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL 189 (648)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~ 189 (648)
+...+..++++++.|++|||.+|++ +++|++||++|||++++|+.|+|||||++|. +..++.++||+.+++.++||+
T Consensus 3 k~~~~~~~~~i~~~a~~fy~~~L~~--~~~a~~YL~~Rgl~~e~i~~F~lGyap~~~~-~~~~~~~~~~~~~~l~~~Gl~ 79 (129)
T 2au3_A 3 KISKDEKVYVALDRVCDFYRESLLK--NREASEYVKSRGIDPKVARKFDLGYAPSSEA-LVKVLKENDLLEAYLETKNLL 79 (129)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHTTCCHHHHHHTTCEECCCHHH-HHHHHHHHTCHHHHHTTTCEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHCCCCHHHHHHHHHCCCCCCHH-HHHHHHHCCHHHHHHHHHCCC
T ss_conf 2210268999999999999875312--5679999886487477775432114776245-666664112037777752233
Q ss_pred EECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCC
Q ss_conf 0034654100001671688897077858885010014655300103876765
Q gi|254780834|r 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 (648)
Q Consensus 190 ~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~i 241 (648)
...+++ +||+|+|||||||+|..|+|||||||+|+++..|||||||||+|
T Consensus 80 ~~~~~~--~~d~F~~RiifPI~d~~G~vvgF~GR~l~~~~~pKYlNSpeT~i 129 (129)
T 2au3_A 80 SPTKGV--YRDLFLRRVVIPIKDPRGRVIGFGGRRIVEDKSPKYINSPDSRV 129 (129)
T ss_dssp CSSTTC--CEETTTTEEEEEEECTTSCEEEEEEEECSCCSSCSEEECCCCSS
T ss_pred CCCCCC--CCCCHHHCCCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCEE
T ss_conf 135787--65310001244304258956643100014566755345443300