Query         gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 648
No_of_seqs    198 out of 1905
Neff          7.9 
Searched_HMMs 33803
Date          Wed Jun  1 19:09:36 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780834.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1dd9_A DNA primase, DNAG; top 100.0 3.5E-30   1E-34  296.6   9.0  145   95-243     1-145 (145)
  2 >2au3_A DNA primase; zinc ribb  99.9 8.6E-28 2.5E-32  274.6   9.2  127  110-241     3-129 (129)
  3 >1dd9_A DNA primase, DNAG; top  99.8 8.7E-20 2.6E-24  201.0  11.2  139  244-392     1-139 (140)
  4 >2au3_A DNA primase; zinc ribb  99.8 1.1E-18 3.4E-23  190.7  11.1  124  242-378     1-124 (125)
  5 >2fcj_A Small toprim domain pr  99.8 7.2E-19 2.1E-23  192.6   5.2  104  270-380     3-118 (119)
  6 >1t6t_1 Putative protein; stru  99.7 6.6E-18   2E-22  183.7   3.6  114  245-381     2-115 (118)
  7 >1q57_A DNA primase/helicase;   99.6 3.1E-15 9.1E-20  159.2   7.2  117  245-381     1-123 (129)
  8 >1nui_A DNA primase/helicase;   99.6 8.5E-15 2.5E-19  155.1   8.0  111  245-375     1-117 (118)
  9 >1d0q_A DNA primase; zinc-bind  99.6 2.6E-15 7.8E-20  159.8   4.6   47   21-72      1-47  (47)
 10 >2au3_A DNA primase; zinc ribb  99.5 3.5E-15   1E-19  158.6   4.7   47   21-72      1-47  (47)
 11 >1d0q_A DNA primase; zinc-bind  97.9 4.4E-05 1.3E-09   65.8   6.6   49    2-102     4-52  (56)
 12 >2r5u_A Replicative DNA helica  97.6   0.005 1.5E-07   46.9  14.1   68  479-546    29-96  (200)
 13 >2r6a_A DNAB helicase, replica  97.4  0.0089 2.6E-07   44.6  12.9   66  480-545    13-78  (155)
 14 >2r6a_C DNAG primase, helicase  97.1  0.0072 2.1E-07   45.4   9.9   90  478-576     4-93  (100)
 15 >1b79_A DNAB helicase; hexamer  96.9    0.03   9E-07   39.7  11.3   69  480-548    20-88  (119)
 16 >3gxv_A Replicative DNA helica  96.8   0.036 1.1E-06   39.0  11.4   70  481-550    11-80  (123)
 17 >2q6t_A DNAB replication FORK   96.7   0.088 2.6E-06   35.4  17.6   66  480-545     9-75  (152)
 18 >3bgw_A DNAB-like replicative   96.0    0.19 5.6E-06   32.3  11.6   63  481-545    15-77  (154)
 19 >1t3w_A DNA primase; DNAG, DNA  91.4     1.2 3.6E-05   24.9   8.1   73  484-557    18-90  (109)
 20 >2au3_A DNA primase; zinc ribb  90.9     0.3 8.9E-06   30.5   3.9   28   73-100    20-47  (48)
 21 >1xmx_A Hypothetical protein V  82.5     3.4   1E-04   20.9   6.8   73  289-366     1-75  (141)
 22 >2gai_A DNA topoisomerase I; z  78.9     2.9 8.5E-05   21.5   4.1   84  272-363     6-93  (100)
 23 >1ffy_A Isoleucyl-tRNA synthet  78.7     1.5 4.5E-05   24.1   2.6   79  271-387    47-125 (272)
 24 >3k9f_C DNA topoisomerase 4 su  78.4     4.4 0.00013   19.8   5.7   67  291-363    97-170 (187)
 25 >1nui_A DNA primase/helicase;   76.6       3 8.7E-05   21.4   3.6   50  170-226    13-62  (72)
 26 >1q57_A DNA primase/helicase;   75.6     3.5  0.0001   20.7   3.8   50  170-226    15-64  (74)
 27 >2kao_A Methionine-R-sulfoxide  72.9     2.6 7.6E-05   21.9   2.5   25   42-69      3-28  (69)
 28 >1xri_A AT1G05000; structural   70.2       3 8.9E-05   21.3   2.4   57   40-96     60-132 (151)
 29 >3gjx_A Exportin-1; transport,  66.7     7.6 0.00022   17.6   7.2   80  357-436    19-110 (211)
 30 >1d3y_A DNA topoisomerase VI A  64.7     6.3 0.00019   18.4   3.1   95  270-366    46-152 (226)
 31 >1vdd_A Recombination protein   64.6     8.2 0.00024   17.3   6.2   84  269-357    11-106 (109)
 32 >3f41_A Phytase; tandem repeat  63.2     8.6 0.00026   17.1   5.3   90    6-101    52-160 (212)
 33 >1yn9_A BVP, polynucleotide 5'  62.7     4.6 0.00014   19.6   2.1   24  314-337   112-135 (169)
 34 >3iac_A Glucuronate isomerase;  62.2       9 0.00027   17.0   4.3   24   77-100    73-96  (117)
 35 >2vbc_A Dengue 4 NS3 FULL-leng  61.8     5.3 0.00016   19.1   2.3   19  208-226    50-68  (88)
 36 >2img_A Dual specificity prote  60.6     5.9 0.00017   18.7   2.3   60   38-97     57-131 (151)
 37 >2wgp_A Dual specificity prote  60.4       6 0.00018   18.6   2.3   36   61-96    107-144 (147)
 38 >2hcm_A Dual specificity prote  60.1     7.6 0.00022   17.6   2.8   73   22-99     46-133 (164)
 39 >2zbk_A Type II DNA topoisomer  60.0     6.4 0.00019   18.3   2.4   98  271-368    49-155 (236)
 40 >2uzz_A N-methyl-L-tryptophan   58.8     5.9 0.00018   18.6   2.1   20  142-161    19-38  (154)
 41 >1dsq_A Nucleic acid binding p  58.5     2.6 7.8E-05   21.9   0.2   11   63-73      4-14  (26)
 42 >2e0t_A Dual specificity phosp  57.7     6.4 0.00019   18.3   2.1   36   61-96     89-126 (128)
 43 >1svp_A Sindbis virus capsid p  56.9     7.3 0.00022   17.8   2.3   23  206-228     9-35  (72)
 44 >1mw9_X DNA topoisomerase I; d  56.9      11 0.00032   16.3   5.1   85  272-364     3-93  (100)
 45 >2fp7_B Polyprotein; flaviviru  55.7     7.1 0.00021   17.9   2.1   17  209-225   123-139 (172)
 46 >2q01_A Uronate isomerase; str  55.1      11 0.00034   16.0   3.5   23   78-100    71-93  (114)
 47 >1b3u_A Protein (protein phosp  54.8      11 0.00034   16.0   5.8   80  355-434    11-92  (111)
 48 >1twf_J DNA-directed RNA polym  54.6      12 0.00034   16.0   3.2   30   63-92      6-39  (70)
 49 >2i6j_A Ssoptp, sulfolobus sol  52.8     7.2 0.00021   17.8   1.7   40   61-100    93-134 (161)
 50 >2g6z_A Dual specificity prote  51.6      13 0.00037   15.6   3.5   63   38-100    51-128 (211)
 51 >2r4f_A 3-hydroxy-3-methylglut  51.5      13 0.00037   15.6   3.2   47  314-360    53-103 (105)
 52 >2qx5_A Nucleoporin NIC96; mRN  51.2      13 0.00038   15.6   3.5   13  485-497    68-80  (207)
 53 >2wv9_A Flavivirin protease NS  51.1     9.9 0.00029   16.6   2.2   17  146-164    81-97  (231)
 54 >1s1i_9 L37A, YL35, 60S riboso  51.1     9.6 0.00029   16.7   2.1   26   41-69     36-61  (91)
 55 >1ile_A Ilers, isoleucyl-tRNA   50.6      13 0.00039   15.5   2.8   70  271-379    37-106 (305)
 56 >2ggv_B NS3, non-structural pr  50.5      10  0.0003   16.4   2.2   17  209-225   137-153 (185)
 57 >2pq5_A Dual specificity prote  50.5     8.2 0.00024   17.3   1.7   38   62-99    136-175 (205)
 58 >3cc2_Z 50S ribosomal protein   50.3     9.6 0.00029   16.7   2.0   25   41-69     61-86  (116)
 59 >2hxp_A Dual specificity prote  50.0      11 0.00033   16.1   2.3   40   61-100    89-131 (155)
 60 >3cxk_A Methionine-R-sulfoxide  49.5      12 0.00035   15.8   2.4   14  147-160    59-72  (164)
 61 >1b3u_A Protein (protein phosp  49.4      14  0.0004   15.3   3.2   18  358-375    24-41  (127)
 62 >3e90_B NS3 protease; trypsin-  49.3      11 0.00031   16.3   2.1   17  209-225   142-158 (198)
 63 >1vh4_A SUFD protein; structur  48.4      10 0.00031   16.4   1.9   82  347-436   342-424 (435)
 64 >2waq_N DNA-directed RNA polym  48.0      14 0.00042   15.2   3.0   31   63-93      6-39  (66)
 65 >1vq8_Z 50S ribosomal protein   48.0      11 0.00033   16.1   2.0   25   41-69     28-53  (83)
 66 >3f81_A Dual specificity prote  47.0      15 0.00043   15.0   2.7   61   40-100    83-160 (183)
 67 >1zbr_A AAQ65385, conserved hy  46.5      15 0.00044   15.0   3.0   53  303-355     1-58  (59)
 68 >3hcj_A MSRB, peptide methioni  46.4     7.4 0.00022   17.7   0.9   14   56-69      7-20  (69)
 69 >2k8d_A Peptide methionine sul  45.3     8.6 0.00026   17.1   1.1   14   56-69     29-42  (63)
 70 >1m1j_A Fibrinogen alpha subun  44.9      15 0.00046   14.8   5.2   14  619-632    32-45  (373)
 71 >2zkr_z 60S ribosomal protein   44.8      16 0.00046   14.8   2.6   25   42-69     38-62  (71)
 72 >2fom_B Polyprotein; flaviviru  44.6      13 0.00039   15.5   2.0   16  209-224   138-153 (185)
 73 >3ljn_A Hypothetical protein;   43.9     6.4 0.00019   18.3   0.3   21   42-66      3-23  (93)
 74 >2aja_A Ankyrin repeat family   43.4      11 0.00032   16.2   1.4   58  242-315    50-107 (156)
 75 >3iar_A Adenosine deaminase; p  42.9      11 0.00032   16.3   1.3   66   79-153    14-79  (188)
 76 >1ses_A Seryl-tRNA synthetase;  42.0      17  0.0005   14.4   8.8   52  584-639    16-67  (83)
 77 >1b3u_A Protein (protein phosp  41.4      15 0.00043   15.0   1.8   66  357-422    20-86  (117)
 78 >1wii_A Hypothetical UPF0222 p  41.0      17 0.00051   14.3   2.6   30   42-71     25-57  (85)
 79 >2esb_A Dual specificity prote  40.7      18 0.00052   14.3   2.7   35   62-96    102-138 (188)
 80 >3emu_A Leucine rich repeat an  40.6      18 0.00052   14.3   2.7   60   38-97     55-129 (161)
 81 >2oud_A Dual specificity prote  40.3      18 0.00053   14.2   2.3   40   61-100    91-133 (177)
 82 >3hvm_A Agmatine deiminase; hy  40.2      18 0.00053   14.2   3.0   53  303-355     1-58  (67)
 83 >3e7h_A DNA-directed RNA polym  40.2     4.8 0.00014   19.5  -0.8   53  200-260    12-72  (81)
 84 >1nc8_A Nucleocapsid protein;   39.7      11 0.00032   16.2   1.0   16   58-73      3-18  (29)
 85 >1a12_A RCC1, regulator of chr  39.7      18 0.00052   14.3   2.0   11  211-221    74-84  (188)
 86 >2r0b_A Serine/threonine/tyros  39.7      18 0.00054   14.2   2.9   37   61-97     94-132 (154)
 87 >3e0m_A Peptide methionine sul  39.6      17 0.00051   14.4   2.0   15  147-161    42-56  (160)
 88 >2dq0_A Seryl-tRNA synthetase;  39.6      18 0.00054   14.1   9.2   61  574-636    33-93  (113)
 89 >1wrm_A Dual specificity phosp  38.7      19 0.00055   14.0   2.9   44   57-100    82-128 (165)
 90 >3cqy_A Anhydro-N-acetylmurami  38.4      19 0.00056   14.0   2.0   52  245-322    99-153 (180)
 91 >2k5e_A Uncharacterized protei  37.9      17 0.00049   14.5   1.7   34  152-185    23-59  (73)
 92 >1q77_A Hypothetical protein A  37.8      19 0.00057   13.9   4.1   39  312-353     2-40  (138)
 93 >1nui_A DNA primase/helicase;   37.5      19 0.00057   13.9   4.0   29   40-70     14-42  (65)
 94 >3i1a_A Spectinomycin phosphot  37.5      15 0.00045   14.8   1.4   16  285-300    68-83  (103)
 95 >2dq3_A Seryl-tRNA synthetase;  37.4      19 0.00057   13.9   5.6   51  586-638    44-94  (112)
 96 >1z0j_B FYVE-finger-containing  37.3      19 0.00058   13.9   6.8   45  589-633    12-56  (59)
 97 >2k53_A A3DK08 protein; NESG,   37.1      20 0.00058   13.8   1.9   25  161-185    33-57  (76)
 98 >3bfv_A CAPA1, CAPB2, membrane  36.9      20 0.00058   13.8   5.2   78  282-363   183-260 (271)
 99 >3hcg_A Peptide methionine sul  36.8      16 0.00047   14.7   1.4   14  147-160    29-42  (146)
100 >1wle_A Seryl-tRNA synthetase;  36.7      20 0.00059   13.8  11.1   69  571-639    31-105 (121)
101 >3jyw_9 60S ribosomal protein   36.7      15 0.00045   14.8   1.3   26   41-69     27-52  (72)
102 >1b3u_A Protein (protein phosp  36.4      20 0.00059   13.8   5.5   75  357-431    18-94  (155)
103 >1ffk_W Ribosomal protein L37A  36.3      19 0.00055   14.0   1.7   26   41-69     28-53  (61)
104 >3fmc_A Putative succinylgluta  35.9      17  0.0005   14.4   1.4   15   51-65     60-74  (76)
105 >1jmv_A USPA, universal stress  35.2      21 0.00061   13.6   4.8   36  314-352     2-37  (141)
106 >2f46_A Hypothetical protein;   35.2      21 0.00062   13.6   2.1   24   71-94    116-139 (156)
107 >3can_A Pyruvate-formate lyase  34.9      21 0.00062   13.6   6.8   77  282-362    23-112 (182)
108 >3f62_A Interleukin 18 binding  34.7      16 0.00046   14.7   1.1   23   48-70      6-28  (109)
109 >2iye_A Copper-transporting AT  34.4      21 0.00063   13.5   4.4  121  238-381    29-157 (164)
110 >1fpz_A Cyclin-dependent kinas  34.1      22 0.00064   13.5   2.1   25  314-338   132-156 (212)
111 >3kb9_A EPI-isozizaene synthas  33.4      22 0.00065   13.4   4.5   12  510-521    36-47  (177)
112 >2etv_A Iron(III) ABC transpor  33.4      20  0.0006   13.7   1.5   39  285-326    27-68  (171)
113 >1juh_A Quercetin 2,3-dioxygen  33.4      15 0.00044   14.9   0.8   10  228-237    22-31  (152)
114 >1pj3_A NAD-dependent malic en  33.0      22 0.00066   13.3   2.5  123  144-324    18-143 (305)
115 >1taf_B TFIID TBP associated f  32.9      22 0.00066   13.3   5.3   49   85-134     8-57  (70)
116 >2nt2_A Protein phosphatase sl  32.8      22 0.00066   13.3   2.3   44   57-100    80-127 (145)
117 >3f6q_B LIM and senescent cell  32.8      17 0.00051   14.4   1.0   15   54-68     27-43  (45)
118 >3cxj_A Uncharacterized protei  32.5      23 0.00067   13.3   3.8   55  295-363    54-108 (165)
119 >1ef4_A Subunit N, DNA-directe  32.3      23 0.00067   13.2   2.7   31   63-93      5-38  (55)
120 >3bk2_A RNAse J, metal depende  32.2      23 0.00068   13.2   2.4   45  200-244    18-80  (161)
121 >1yz4_A DUSP15, dual specifici  32.1      23 0.00068   13.2   2.5   59   39-97     52-126 (160)
122 >1dzl_A Late major capsid prot  32.1      23 0.00068   13.2   1.7   14  198-211    90-103 (505)
123 >2vqp_A Matrix protein; viral   31.8      15 0.00044   14.9   0.6   18   37-54     18-36  (133)
124 >2pt0_A MYO-inositol hexaphosp  31.5      23 0.00069   13.1   8.3   89    6-100    52-158 (214)
125 >3pfk_A Phosphofructokinase; t  31.3      24  0.0007   13.1   4.3   35  315-351     2-37  (186)
126 >1vcp_A Semliki forest virus c  31.2      24  0.0007   13.1   2.4   12  209-220    41-52  (86)
127 >1gqe_A Release factor 2, RF2;  31.1      24  0.0007   13.1  12.0   93  539-634    23-116 (120)
128 >2e9h_A EIF-5, eukaryotic tran  31.1      24  0.0007   13.1   1.8   32   42-73      2-35  (54)
129 >1vho_A Endoglucanase; structu  30.8      16 0.00047   14.7   0.6   63  273-335    60-128 (259)
130 >1qtq_A GLNRS, protein (glutam  30.7      14  0.0004   15.3   0.3   71  140-228    31-101 (175)
131 >3e3v_A Regulatory protein REC  30.6      19 0.00057   13.9   1.0   18  138-155    36-53  (64)
132 >1vd4_A Transcription initiati  30.5      24 0.00071   13.0   1.8   30   38-69     14-47  (62)
133 >1iq0_A Arginyl-tRNA synthetas  30.0      25 0.00073   12.9   2.8   28  353-380    41-68  (209)
134 >1pfk_A Phosphofructokinase; t  29.8      25 0.00073   12.9   4.1   34  315-350     3-37  (185)
135 >2w84_A Peroxisomal membrane p  29.7      25 0.00073   12.9   2.5   36  121-156    18-54  (70)
136 >1efd_N Ferrichrome-binding pe  29.2      25 0.00074   12.9   1.4   69  284-355    29-101 (104)
137 >1svp_A Sindbis virus capsid p  29.1      25 0.00075   12.8   2.4   12  209-220    41-52  (89)
138 >1kxf_A Sindbis virus capsid p  29.1      25 0.00075   12.8   2.4   12  209-220    41-52  (87)
139 >1yzm_A FYVE-finger-containing  29.1      25 0.00075   12.8   6.8   44  590-633     6-49  (51)
140 >1zzw_A Dual specificity prote  29.0      25 0.00075   12.8   2.7   40   61-100    87-129 (149)
141 >3eol_A Isocitrate lyase; seat  28.9      25 0.00075   12.8   1.5   34  275-308    48-81  (85)
142 >1yqf_A Hypothetical protein L  28.8      26 0.00076   12.8   1.6   16  210-225    98-113 (203)
143 >1twf_I B12.6, DNA-directed RN  28.5      26 0.00076   12.7   2.6   29   41-69     20-55  (69)
144 >1ep5_B Capsid protein C, coat  28.3      26 0.00077   12.7   2.4   12  209-220    41-52  (87)
145 >1ky9_A Protease DO, DEGP, HTR  28.2      26 0.00077   12.7   2.6   23  209-231    85-107 (134)
146 >1z0k_B FYVE-finger-containing  28.2      26 0.00077   12.7   6.1   43  590-632    24-66  (69)
147 >3iyj_F Major capsid protein L  28.2      23 0.00069   13.1   1.1   11   56-66     88-100 (495)
148 >1p0z_A Sensor kinase CITA; tr  27.9      26 0.00078   12.6   2.8   22  205-226   103-124 (131)
149 >1gq2_A Malic enzyme; oxidored  27.7      27 0.00079   12.6   2.6   45  280-324    95-140 (298)
150 >2vpu_A TET3, 354AA long hypot  27.7      18 0.00053   14.2   0.4   40  298-337    93-133 (259)
151 >1i7d_A DNA topoisomerase III;  27.6      27 0.00079   12.6   3.1   59  305-364    86-144 (152)
152 >3fos_A Sensor protein; sensor  27.6      27 0.00079   12.6   1.6   68  144-225    27-98  (100)
153 >3ff5_A PEX14P, peroxisomal bi  27.6      27 0.00079   12.6   3.3   37  120-156    12-49  (54)
154 >2pfs_A USP, universal stress   27.5      27 0.00079   12.6   4.6   37  314-353     6-42  (150)
155 >3h7c_X Agmatine deiminase; st  27.4      27 0.00079   12.6   3.3   72  284-355    36-116 (134)
156 >2iw3_A Elongation factor 3A;   27.3      27  0.0008   12.6   1.6   18  358-375    22-39  (170)
157 >2be1_A Serine/threonine-prote  26.9      27 0.00081   12.5   1.5   13  198-210    52-64  (109)
158 >3e3v_A Regulatory protein REC  26.9      27 0.00081   12.5   3.8   35  122-156     5-41  (45)
159 >2hjn_A MPS1 binder 1, mainten  26.5      28 0.00082   12.5   1.9   30  345-374    61-90  (236)
160 >1ep5_B Capsid protein C, coat  26.0      28 0.00083   12.4   2.1   22  206-228     8-33  (70)
161 >2ysa_A Retinoblastoma-binding  26.0      15 0.00045   14.8  -0.2   15   61-75      7-21  (55)
162 >2q1f_A Chondroitinase; alpha   25.8      19 0.00055   14.0   0.2   67  156-237   117-186 (190)
163 >1jmu_B Protein MU-1; protein-  25.4      26 0.00076   12.8   0.9   16  140-155    79-94  (145)
164 >1zxx_A 6-phosphofructokinase;  25.4      29 0.00085   12.3   4.8   15  231-245    58-72  (182)
165 >1rxd_A Protein tyrosine phosp  25.1      29 0.00086   12.3   2.3   28   67-94    107-134 (159)
166 >2yvq_A Carbamoyl-phosphate sy  25.0      15 0.00046   14.8  -0.3   16  285-301    45-60  (143)
167 >3e0o_A Peptide methionine sul  24.7      30 0.00087   12.2   1.4   12  149-160    17-28  (131)
168 >2z08_A Universal stress prote  24.6      30 0.00088   12.2   3.7   37  314-353     2-38  (137)
169 >2gf3_A MSOX, monomeric sarcos  24.4      19 0.00055   14.1   0.0   20  140-159    18-37  (228)
170 >3dlo_A Universal stress prote  24.3      30 0.00089   12.1   5.1   38  314-354    24-62  (155)
171 >3clc_A Regulatory protein; pr  24.2      30 0.00089   12.1   1.4   39  146-184    33-71  (82)
172 >3icy_A Sensor protein; sensor  23.9      30  0.0009   12.1   2.8   21  206-226    55-75  (77)
173 >1mbm_A NSP4 proteinase, chymo  23.8      31  0.0009   12.1   1.1   14   59-72    102-116 (149)
174 >1ev0_A MINE; topological spec  23.6      25 0.00074   12.8   0.6   25    4-30      5-29  (58)
175 >3c1d_A Protein ORAA, regulato  23.5      31 0.00091   12.0   4.0   34  123-156     6-40  (47)
176 >2yzq_A Putative uncharacteriz  23.1      31 0.00093   12.0   2.3   18  206-223    32-49  (77)
177 >3d5l_A Regulatory protein REC  23.1      31 0.00093   12.0   3.9   35  122-156     5-41  (45)
178 >1tq8_A Hypothetical protein R  23.0      31 0.00093   11.9   3.0   41  312-355    15-55  (128)
179 >1fmk_A C-SRC, P60-SRC, tyrosi  23.0      11 0.00032   16.2  -1.4   76  141-221     6-84  (192)
180 >2jer_A Agmatine deiminase; hy  22.8      32 0.00094   11.9   2.5   72  284-355    37-116 (133)
181 >2k4q_A Major tail protein V;   22.7      32 0.00094   11.9   4.9   36  316-357    84-119 (156)
182 >1yzy_A Hypothetical protein H  22.6      32 0.00094   11.9   1.8   16  206-221   110-125 (413)
183 >2ja2_A Glutamyl-tRNA syntheta  22.5      32 0.00095   11.9   2.9   34  132-165    91-126 (168)
184 >1ka5_A Phosphocarrier protein  22.4      32 0.00095   11.8   5.1   62  306-377    22-83  (88)
185 >2pke_A Haloacid delahogenase-  22.1      33 0.00096   11.8   1.2   61  275-335    24-87  (163)
186 >1ryi_A Glycine oxidase; flavo  22.1      25 0.00074   12.9   0.3   17  143-159    35-51  (228)
187 >3c8f_A Pyruvate formate-lyase  22.1      33 0.00097   11.8   6.4   78  286-363    94-181 (245)
188 >2jk1_A HUPR, hydrogenase tran  22.0      33 0.00097   11.8   6.0   99  273-380     3-105 (139)
189 >1xng_A NH(3)-dependent NAD(+)  22.0      33 0.00097   11.8   3.4   90   60-158     9-106 (136)
190 >2om6_A Probable phosphoserine  21.9      33 0.00097   11.8   2.3   29  272-300    91-122 (150)
191 >3f2b_A DNA-directed DNA polym  21.8      33 0.00098   11.8   2.5   28  149-176    93-120 (230)
192 >1ps1_A Pentalenene synthase;   21.6      33 0.00098   11.7   4.0   38  277-314    36-73  (337)
193 >1a1t_A Nucleocapsid protein;   21.4      31 0.00091   12.0   0.7   11   61-71     12-22  (55)
194 >3ezz_A Dual specificity prote  21.4      34 0.00099   11.7   2.5   46   55-100    78-127 (144)
195 >1djl_A Transhydrogenase DIII;  21.3      34   0.001   11.7   4.2   18  337-354    68-85  (207)
196 >3hno_A Pyrophosphate-dependen  21.2      34   0.001   11.7   4.7   38  315-355     4-44  (211)
197 >1pi1_A MOB1A; mitotic EXIT ne  20.9      34   0.001   11.6   1.3   27  348-374    11-37  (185)
198 >2vug_A PAB1020; RNA, ligase,   20.9     2.3 6.8E-05   22.4  -5.2   29   15-52      4-32  (101)
199 >1y56_B Sarcosine oxidase; deh  20.9      33 0.00097   11.8   0.7   15  143-157    23-37  (222)
200 >2yvy_A MGTE, Mg2+ transporter  20.6      35   0.001   11.6   2.3   17  207-223    29-45  (75)
201 >1bjt_A Topoisomerase II; quat  20.5      35   0.001   11.6   2.8   85  294-387    90-179 (202)
202 >1l6w_A Fructose-6-phosphate a  20.5      31  0.0009   12.1   0.5   71   76-152    30-107 (196)
203 >1vcp_A Semliki forest virus c  20.5      35   0.001   11.5   2.4   21  207-228     2-26  (63)
204 >1evy_A Glycerol-3-phosphate d  20.4      24  0.0007   13.1  -0.1   14  509-522   117-130 (167)
205 >2csx_A Methionyl-tRNA synthet  20.3      35   0.001   11.5   2.9   26  354-379   301-326 (348)
206 >1kcq_A Gelsolin, brevin, ADF,  20.2      35   0.001   11.5   4.5   55  315-369    37-93  (104)
207 >3eat_X Pyoverdine biosynthesi  20.2      23 0.00068   13.2  -0.2   13   87-99     46-58  (200)

No 1  
>>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein; HET: DNA; 1.60A {Escherichia coli} (A:1-145)
Probab=99.96  E-value=3.5e-30  Score=296.65  Aligned_cols=145  Identities=34%  Similarity=0.638  Sum_probs=133.9

Q ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf             81885877682036777889999999999999999973267775789999850688535101244225677410345542
Q gi|254780834|r   95 IAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR  174 (648)
Q Consensus        95 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~  174 (648)
                      .|||++|...  ..++..+++.++++++.|++|||.+|+++.+++|++||.+|||++++|+.|+|||||.+|+.|..++.
T Consensus         1 ~~gi~l~~~~--~~~~~~~~~~l~~~~~~a~~~y~~~L~~~~~~~a~~YL~~Rgl~~~~i~~F~lGyap~~~~~l~~~~~   78 (145)
T 1dd9_A            1 MRGSHHHHHH--GSGSMHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFG   78 (145)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHHHTSGGGHHHHHHHHHTTCCHHHHHHHTCEEECSSSCHHHHHHC
T ss_pred             CCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf             9875445667--88767799999999999999999996897408999999977989999986512547655799999987


Q ss_pred             CCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCCCC
Q ss_conf             059973452320121003465410000167168889707785888501001465530010387676535
Q gi|254780834|r  175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH  243 (648)
Q Consensus       175 ~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~if~  243 (648)
                      ++|++.++|.++||+..+++|. +||+|+|||||||+|..|+|||||||+|+++ .|||||||||++|+
T Consensus        79 ~~~~~~~~l~~~GL~~~~~~g~-~~d~F~~RiifPI~d~~G~vvgF~gR~l~~~-~pKYlNspet~iF~  145 (145)
T 1dd9_A           79 GNPENRQSLIDAGMLVTNDQGR-SYDRFRERVMFPIRDKRGRVIGFGGRVLGND-TPKYLNSPETDIFH  145 (145)
T ss_dssp             SSHHHHHHHHHTTSEEEC---C-EEESCCSEEEEEEECTTSCEEEEEEEESSSC-SCSEEECCCCSSCC
T ss_pred             HCCCCHHHHHHCCCEEECCCCC-CHHHHCCEEEEEEECCCCEEEEEEEEECCCC-CCCCCCCCCCCCCC
T ss_conf             5798767787547734346533-0122223268888516621899931231666-43245788754544


No 2  
>>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:96-224)
Probab=99.95  E-value=8.6e-28  Score=274.63  Aligned_cols=127  Identities=32%  Similarity=0.573  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCC
Q ss_conf             77889999999999999999973267775789999850688535101244225677410345542059973452320121
Q gi|254780834|r  110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL  189 (648)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~  189 (648)
                      +...+..++++++.|++|||.+|++  +++|++||++|||++++|+.|+|||||++|. +..++.++||+.+++.++||+
T Consensus         3 k~~~~~~~~~i~~~a~~fy~~~L~~--~~~a~~YL~~Rgl~~e~i~~F~lGyap~~~~-~~~~~~~~~~~~~~l~~~Gl~   79 (129)
T 2au3_A            3 KISKDEKVYVALDRVCDFYRESLLK--NREASEYVKSRGIDPKVARKFDLGYAPSSEA-LVKVLKENDLLEAYLETKNLL   79 (129)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHTTCCHHHHHHTTCEECCCHHH-HHHHHHHHTCHHHHHTTTCEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHCCCCHHHHHHHHHCCCCCCHH-HHHHHHHCCHHHHHHHHHCCC
T ss_conf             2210268999999999999875312--5679999886487477775432114776245-666664112037777752233


Q ss_pred             EECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCC
Q ss_conf             0034654100001671688897077858885010014655300103876765
Q gi|254780834|r  190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL  241 (648)
Q Consensus       190 ~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~i  241 (648)
                      ...+++  +||+|+|||||||+|..|+|||||||+|+++..|||||||||+|
T Consensus        80 ~~~~~~--~~d~F~~RiifPI~d~~G~vvgF~GR~l~~~~~pKYlNSpeT~i  129 (129)
T 2au3_A           80 SPTKGV--YRDLFLRRVVIPIKDPRGRVIGFGGRRIVEDKSPKYINSPDSRV  129 (129)
T ss_dssp             CSSTTC--CEETTTTEEEEEEECTTSCEEEEEEEECSCCSSCSEEECCCCSS
T ss_pred             CCCCCC--CCCCHHHCCCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCEE
T ss_conf             135787--65310001244304258956643100014566755345443300


No 3  
>>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein; HET: DNA; 1.60A {Escherichia coli} (A:146-285)
Probab=99.82  E-value=8.7e-20  Score=200.98  Aligned_cols=139  Identities=35%  Similarity=0.683  Sum_probs=132.0

Q ss_pred             CCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECC
Q ss_conf             21011081788886433100002356787089971438899987435542113432136626789885126818996178
Q gi|254780834|r  244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDG  323 (648)
Q Consensus       244 K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDg  323 (648)
                      ||+.|||++.+.+.+++          .++++||||++|+++++++|+.++|+++|+++|..|+..|.+..++|++|||+
T Consensus         1 K~~~lyg~~~~~~~~~~----------~~~v~i~EG~~Dals~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~D~   70 (140)
T 1dd9_A            1 KGRQLYGLYEAQQDNAE----------PNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDG   70 (140)
T ss_dssp             TTTCCBTHHHHHHTCSS----------CSCEEEESSHHHHHHHHHTTCCCEEECCC-CCCHHHHHHHHHHCSEEEEEEES
T ss_pred             CHHHCCCHHHHHHHCCC----------CCCEEEEECHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf             20211325554321155----------65259995579899998715234401331021178999987407745787536


Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             866225777888888777536973067525788888899720366889988641499279999999853
Q gi|254780834|r  324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETEN  392 (648)
Q Consensus       324 D~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l~dFl~~~l~~~  392 (648)
                      |.||++++.++...+..+...+..+++..+|+|+||+|+++++|.++|.++++++.|+.+|+++.+.++
T Consensus        71 D~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kD~nd~~~~~g~e~~~~~i~~a~~~~~~~~~~~~~~  139 (140)
T 1dd9_A           71 DRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQ  139 (140)
T ss_dssp             SHHHHHHHHHHHHHHGGGCCTTCEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEHHHHHHHHHGGG
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf             620216788589987687359973899980589988999885177999999862888999999999855


No 4  
>>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:225-349)
Probab=99.79  E-value=1.1e-18  Score=190.74  Aligned_cols=124  Identities=45%  Similarity=0.770  Sum_probs=117.3

Q ss_pred             CCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEE
Q ss_conf             35210110817888864331000023567870899714388999874355421134321366267898851268189961
Q gi|254780834|r  242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCF  321 (648)
Q Consensus       242 f~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~f  321 (648)
                      |+|++.|||++.++..+++.          ++++||||++|+++++|+|++++|+++||+++..|+..+.+..++||||+
T Consensus         1 f~k~~~lygl~~~~~~~~~~----------~~v~i~EG~~dals~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~vvi~~   70 (125)
T 2au3_A            1 FKKGENLFGLYEAKEYIKEE----------GFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQNQANLLSKFTKKVYILY   70 (125)
T ss_dssp             CCGGGCEETHHHHHHHHHHH----------TCEEECSSHHHHHHHHHTTCCSEEEESSSSCCHHHHHHHHTTCSEEEEEC
T ss_pred             ECCCCCCCCCHHHHHHHCCC----------CCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEC
T ss_conf             03464444410122210134----------41033046235678876186553343123433688988761277236742


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHC
Q ss_conf             788662257778888887775369730675257888888997203668899886414
Q gi|254780834|r  322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES  378 (648)
Q Consensus       322 DgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A  378 (648)
                      |+|.||++|+.+....+   ...+..++++.+|+++|++|+++++|.+++++++++|
T Consensus        71 D~D~aG~~~a~~~~~~l---~~~~~~~~~~~~p~~kD~nD~l~~~g~e~l~~~l~~a  124 (125)
T 2au3_A           71 DGDDAGRKAMKSAIPLL---LSAGVEVYPVYLPEGYDPDEFIKEFGKEELRRLINSS  124 (125)
T ss_dssp             CSSHHHHHHHHHHHHHH---HHTTCEEEEECCCTTCCHHHHHHHHCHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCHHHHHHHCCHHHHHHHHHCC
T ss_conf             78677775578877654---0236521366589998849999864999999999668


No 5  
>>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} (A:)
Probab=99.75  E-value=7.2e-19  Score=192.55  Aligned_cols=104  Identities=13%  Similarity=0.075  Sum_probs=94.3

Q ss_pred             CCCEEEEECCHHHHHHHHHCCCCCCHHHH-HCCCCHHHHHHHHHCCC--EEEEEECCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             78708997143889998743554211343-21366267898851268--1899617886622577788888877753697
Q gi|254780834|r  270 SSSFIILVEGYMDVLSLCQAGVQNVVSSL-GTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN  346 (648)
Q Consensus       270 ~~~~~i~vEGy~Dvi~l~~~G~~n~va~~-Gtalt~~~~~~l~r~~~--~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~  346 (648)
                      ..+++||||||||||+|||+|++||||++ |||+|.+|+++|+++++  +|++|||||.||++|+.+....       ..
T Consensus         3 k~~~viIVEG~~D~i~l~~~G~~n~Va~~~gta~~~~~l~~l~~~~~~~~iil~~D~D~aG~~a~~~l~~~-------l~   75 (119)
T 2fcj_A            3 RVEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKLRRQFRRM-------FP   75 (119)
T ss_dssp             CCCEEEEESSHHHHHHHHHHBSSCCEEEECCSCCCHHHHHHHHHHTTTSEEEEECCSSHHHHHHHHHHHHH-------CT
T ss_pred             CCCEEEEECCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHH-------CC
T ss_conf             28989998088999999981898869768986373999999999708984899844892889999999986-------78


Q ss_pred             CEEEEECCCC---------CCHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf             3067525788---------888899720366889988641499
Q gi|254780834|r  347 RVNFVLLSRG---------EDPDSFIRCYGKTAFEKLIVESLP  380 (648)
Q Consensus       347 ~v~vv~LP~G---------~DPDe~ir~~G~eaf~~ll~~A~~  380 (648)
                      .++++.+|.|         +||+++++++|.+++..++++|.|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~d~~e~l~~~~~~~~~~~i~~a~~  118 (119)
T 2fcj_A           76 EAEHLYIDRAYREVAAAPIWHLAQVLLRARFDVRIESLMRGRG  118 (119)
T ss_dssp             TSEEECCCTTTCSTTTSCHHHHHHHHHHTTCCBCGGGTC----
T ss_pred             CCCEEEECCCCCCHHCCCHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             5538885465410202456789999997761688988887337


No 6  
>>1t6t_1 Putative protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.80A {Aquifex aeolicus VF5} (1:)
Probab=99.70  E-value=6.6e-18  Score=183.71  Aligned_cols=114  Identities=29%  Similarity=0.227  Sum_probs=105.0

Q ss_pred             CHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf             10110817888864331000023567870899714388999874355421134321366267898851268189961788
Q gi|254780834|r  245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGD  324 (648)
Q Consensus       245 ~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD  324 (648)
                      +++|||++++++.++..        ..+++|||||++||++|+++|++||||++|+++++.|+..|+++ .+||+|||+|
T Consensus         2 ~e~lygl~~~~~~~~~~--------~~~~viIvEG~~Dalsl~~~G~~~~va~~g~~~~~~~~~~l~~~-~~vii~~D~D   72 (118)
T 1t6t_1            2 TKEPRNLSEWIKELKKA--------SREAVILVEGKNDKKALSKFSIKNVIDLSGKRYADVVDXLEGKW-EKVILLFDLD   72 (118)
T ss_dssp             ---CCSHHHHHHHHHHH--------TTTSEEEESSHHHHHHHHTTTCCCEEECTTSCHHHHHHHHTTTC-SEEEECCCSS
T ss_pred             CCCHHHHHHHHHHHHHC--------CCCCEEEEECHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHCC-CCEEEEECCC
T ss_conf             71034089999999981--------79968998145999999983412324128875458999998348-9269984898


Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCH
Q ss_conf             662257778888887775369730675257888888997203668899886414992
Q gi|254780834|r  325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL  381 (648)
Q Consensus       325 ~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l  381 (648)
                      .||++++.+.++.              ++|+|+|||++++++|++++..+++++.+.
T Consensus        73 ~~G~~~~~~~~~~--------------l~~~g~D~~~~~~~~g~~~~~~~i~~a~~~  115 (118)
T 1t6t_1           73 THGERINQKXKEL--------------LSSQGFLVDENFRNFLKKWNIIHIEEINGG  115 (118)
T ss_dssp             HHHHHHHHHHHHH--------------HHHTTCEEECHHHHHHHHTTCCCGGGC---
T ss_pred             HHHHHHHHHHHHH--------------HHHCCCEEEHHHHHHHHHHCHHHHHHHHCC
T ss_conf             8899999999999--------------998699442459999988486999865476


No 7  
>>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} (A:75-203)
Probab=99.59  E-value=3.1e-15  Score=159.19  Aligned_cols=117  Identities=15%  Similarity=0.126  Sum_probs=100.4

Q ss_pred             CHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHH---HHHCCCCHHHHHHHHHC---CCEEE
Q ss_conf             1011081788886433100002356787089971438899987435542113---43213662678988512---68189
Q gi|254780834|r  245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS---SLGTALTEYQLRLLWKL---SPRIV  318 (648)
Q Consensus       245 ~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va---~~Gtalt~~~~~~l~r~---~~~vv  318 (648)
                      |+.|||++.+.+.              +.++||||+||+++++++|+++++|   +.|++++..|+..+.++   ..+||
T Consensus         1 s~~ly~~~~~~~~--------------~~i~i~EG~~Dalsl~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~iv   66 (129)
T 1q57_A            1 SDALFGKHLWNGG--------------KKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQII   66 (129)
T ss_dssp             TTCEETGGGCSSE--------------EEEEEESSHHHHHHHTTTTTTCSCEEEESSTTTTHHHHHHTTHHHHHTEEEEE
T ss_pred             CCCCCCEECCCCC--------------CEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             6642040204799--------------98999886689999999658886156157542104889999899863698799


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCH
Q ss_conf             961788662257778888887775369730675257888888997203668899886414992
Q gi|254780834|r  319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL  381 (648)
Q Consensus       319 l~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l  381 (648)
                      +|||+|+||++|+.|....+      ...-..+.+|+++||+|+++++|.++++..+++++++
T Consensus        67 i~~D~D~aG~~~a~~~~~~~------~~~~~~~~~p~~kD~nd~l~~~~~~~~~~~l~~a~~~  123 (129)
T 1q57_A           67 LMFDMDEAGRKAVEEAAQVL------PAGKVRVAVLPCKDANECHLNGHDREIMEQVWNAGPW  123 (129)
T ss_dssp             EECCSSHHHHHHHHHHHHHS------CGGGEEECCCSSSSHHHHHTTSCHHHHHHHHTTCCCC
T ss_pred             EECCCCHHHHHHHHHHHHHC------CCCEEEEEECCCCCCCHHHHHCCCHHHHHHHHHHCCC
T ss_conf             96089989999999998755------7755999856656874566642313456787752136


No 8  
>>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} (A:138-255)
Probab=99.57  E-value=8.5e-15  Score=155.12  Aligned_cols=111  Identities=15%  Similarity=0.127  Sum_probs=95.4

Q ss_pred             CHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHH---HHHCCCCHHHHHHHHHCC---CEEE
Q ss_conf             1011081788886433100002356787089971438899987435542113---432136626789885126---8189
Q gi|254780834|r  245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS---SLGTALTEYQLRLLWKLS---PRIV  318 (648)
Q Consensus       245 ~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va---~~Gtalt~~~~~~l~r~~---~~vv  318 (648)
                      |+.|||++.+++.              ++++||||++|++|++|+|++++|+   ++|++++..|+..+.++.   .+|+
T Consensus         1 S~~l~~~~~~~~~--------------~~v~i~EG~~Dals~~~~g~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ii   66 (118)
T 1nui_A            1 SDALFGKHLWNGG--------------KKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQII   66 (118)
T ss_dssp             TTCCTTGGGCCCB--------------SCCEEESSHHHHHHHHHHHTTCSCEECCTTTTTTHHHHHHHTHHHHTTBSCEE
T ss_pred             CCCCEEEEECCCC--------------CEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             4632022104687--------------66999788136999999842688654367630121467788888743677599


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHH
Q ss_conf             961788662257778888887775369730675257888888997203668899886
Q gi|254780834|r  319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI  375 (648)
Q Consensus       319 l~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll  375 (648)
                      +|||+|.||++++.+..+.+      ...-..+.+|+|+||+|+++++|.++|+++|
T Consensus        67 i~~DnD~aG~~~~~~~~~~l------~~~~~~~~~p~~kD~nd~l~~~g~~~~~~~i  117 (118)
T 1nui_A           67 LMFDMDEAGRKAVEEAAQVL------PAGKVRVAVLPCKDANECHLNGHDREIMEQV  117 (118)
T ss_dssp             EECCSSHHHHHHHHHHHHHS------CTTTEEECCCSSSSHHHHHTTTTHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHHHHHC------CCCCEEEEECCCCCHHHHHHCCCHHHHHHHH
T ss_conf             97789989999999999875------7787999508987989998819999999975


No 9  
>>1d0q_A DNA primase; zinc-binding motif, protein; HET: DNA; 1.71A {Bacillus stearothermophilus} (A:23-69)
Probab=99.56  E-value=2.6e-15  Score=159.80  Aligned_cols=47  Identities=47%  Similarity=1.025  Sum_probs=46.0

Q ss_pred             HHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCC
Q ss_conf             5412221015887777755753458888587879817897467136888878
Q gi|254780834|r   21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD   72 (648)
Q Consensus        21 v~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd   72 (648)
                      ||+||+|+|+|+|     |||+||||+||||||+|+|+|++|||||||+|||
T Consensus         1 ig~~v~l~~~G~~-----~~~~CPfH~ek~PSf~V~~~k~~~~CFgCg~gGd   47 (47)
T 1d0q_A            1 IGEYVQLKRQGRN-----YFGLCPFHGEKTPSFSVSPEKQIFHCFGCGAGGN   47 (47)
T ss_dssp             HTTTSCCEEETTE-----EEECCSSSCCSSCCEEEETTTTEEEETTTCCEEC
T ss_pred             HHHCCCEEECCCC-----EEEECCCCCCCCCCEEECCCCCEEEEECCCCCCH
T ss_conf             9640786887966-----0787121279887438816841035630036633


No 10 
>>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:20-66)
Probab=99.55  E-value=3.5e-15  Score=158.62  Aligned_cols=47  Identities=43%  Similarity=0.940  Sum_probs=46.0

Q ss_pred             HHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCC
Q ss_conf             5412221015887777755753458888587879817897467136888878
Q gi|254780834|r   21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD   72 (648)
Q Consensus        21 v~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd   72 (648)
                      ||+||+|+|+|+|     ||++||||+||||||+|+|+||+|||||||+|||
T Consensus         1 i~~yv~l~~~G~~-----~~~~CPfH~ek~PSf~v~~~k~~~~CFgCg~gGd   47 (47)
T 2au3_A            1 ISEYLNLEKVGSN-----YRTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGD   47 (47)
T ss_dssp             HHHHSCCEEETTE-----EEECCSSSCCSSCCEEEETTTTEEEETTTCCEEC
T ss_pred             HHHCEEEEECCCE-----EEEECCCCCCCCCCEEEECCCCEEEECCCCCCCC
T ss_conf             8626048976974-----7987989999899559988999899658998977


No 11 
>>1d0q_A DNA primase; zinc-binding motif, protein; HET: DNA; 1.71A {Bacillus stearothermophilus} (A:1-22,A:70-103)
Probab=97.86  E-value=4.4e-05  Score=65.80  Aligned_cols=49  Identities=35%  Similarity=0.575  Sum_probs=45.7

Q ss_pred             CCCHHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHC
Q ss_conf             87888999998748888875412221015887777755753458888587879817897467136888878989989885
Q gi|254780834|r    2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL   81 (648)
Q Consensus         2 ~i~~~~i~~i~~~~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd~~~f~~~~~   81 (648)
                      +||.+.||+||..+|||+|+                                                    |+|+|++|
T Consensus         4 ~ip~e~i~~irr~~div~v~----------------------------------------------------fsflmdie   31 (56)
T 1d0q_A            4 RIPEETIEAIRRGVDIVDVA----------------------------------------------------FTFLMDIE   31 (56)
T ss_dssp             TSCHHHHHHHHHHCCHHHHH----------------------------------------------------HHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCHHHHH----------------------------------------------------HHHHHHHH
T ss_conf             88989999999859999999----------------------------------------------------99999996


Q ss_pred             CCCHHHHHHHHHHHHCCCCCC
Q ss_conf             999799999999981885877
Q gi|254780834|r   82 GCSFIESVQRLAAIAGVPLPV  102 (648)
Q Consensus        82 ~~~f~ea~~~la~~~gi~~~~  102 (648)
                      |++|.||++.||.++||++..
T Consensus        32 gi~fiea~krla~ka~vdls~   52 (56)
T 1d0q_A           32 GIPFVEAAKRLAAKAGVDLSV   52 (56)
T ss_dssp             TCCHHHHHHHHHHHHTCCCGG
T ss_pred             CCCHHHHHHHHHHHHCCCCCC
T ss_conf             869999999999996998777


No 12 
>>2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication, DNA-binding, endonuclease; 1.90A {Mycobacterium tuberculosis} (A:)
Probab=97.63  E-value=0.005  Score=46.91  Aligned_cols=68  Identities=10%  Similarity=0.116  Sum_probs=61.5

Q ss_pred             CHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             30379999999998477889999844300237998899999999999753889998999988511128
Q gi|254780834|r  479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF  546 (648)
Q Consensus       479 ~~~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l  546 (648)
                      .....|+.+|..|+.+|+.+.++...|...+|.++.++.||..+.+.+.++...+...+...+...+.
T Consensus        29 ~~~~aE~~vLg~ll~~p~~~~~v~~~L~~edF~~~~h~~If~~i~~l~~~~~~iD~~~l~~~l~~~~~   96 (200)
T 2r5u_A           29 QDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYGRGEPADAVTVAAELDRRGL   96 (200)
T ss_dssp             CCHHHHHHHHHHHHHCHHHHHHHHTTCCTTCCSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf             88999999999999387279999985899874739999999999999986998765788999877687


No 13 
>>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A (A:1-155)
Probab=97.40  E-value=0.0089  Score=44.59  Aligned_cols=66  Identities=15%  Similarity=0.069  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             037999999999847788999984430023799889999999999975388999899998851112
Q gi|254780834|r  480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG  545 (648)
Q Consensus       480 ~~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~  545 (648)
                      ..-.|+.+|.+|+.+|+.+.++...+...+|.++.++.||..+.+.+.++...|...+...+...+
T Consensus        13 ~~eaE~~lLg~ll~~~~~~~~v~~~L~~edF~~~~h~~If~ai~~l~~~g~~iD~~~v~~~l~~~~   78 (155)
T 2r6a_A           13 SIEAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLRVADRGEPVDLVTVTAELAASE   78 (155)
T ss_dssp             CHHHHHHHHHHHHHCGGGHHHHHHHCCGGGCSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf             899999999999859626999994059877799899999999999997699999999999986459


No 14 
>>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A* (C:1-100)
Probab=97.11  E-value=0.0072  Score=45.45  Aligned_cols=90  Identities=13%  Similarity=0.126  Sum_probs=66.8

Q ss_pred             CCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             53037999999999847788999984430023799889999999999975388999899998851112899999999986
Q gi|254780834|r  478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV  557 (648)
Q Consensus       478 ~~~~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~elL~~L~~~~  557 (648)
                      .....+|+.||+.|+++|+++..+... ...+|.++.++.|+..+...+.++..+++..+...+.++. ..++.++    
T Consensus         4 ~~~~~AEr~LL~~ml~~~~~~~~v~~~-~~~~F~~~~yq~i~~~l~~~~~e~~~~~~a~f~~~l~de~-~~~~~~i----   77 (100)
T 2r6a_C            4 PAFQNAERLLLAHXXRSRDVALVVQER-IGGRFNIEEHRALAAYIYAFYEEGHEADPGALISRIPGEL-QPLASEL----   77 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHH-CCSCCSSHHHHHHHHHHHHHHTTSCCSCHHHHTTTSCSSS-HHHHHHH----
T ss_pred             CCHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHH-HHHHHHH----
T ss_conf             943999999999998794899999977-2246615989999999999984144305889999965111-3669999----


Q ss_pred             HHHHHHHCCCCCCHHHHHH
Q ss_conf             5433320256899889999
Q gi|254780834|r  558 RDAGLWSATTEANIVDVRQ  576 (648)
Q Consensus       558 ~~~~~~~~~~e~~~~d~~e  576 (648)
                         .......+.+.+.+.+
T Consensus        78 ---~~~~~~~e~s~~ei~D   93 (100)
T 2r6a_C           78 ---SLLLIADDVSEQELED   93 (100)
T ss_dssp             ---TTSCCCSSCCHHHHHH
T ss_pred             ---HHHHCCCCCCHHHHHH
T ss_conf             ---9987036651788999


No 15 
>>1b79_A DNAB helicase; hexamer, DNA replication; 2.30A {Escherichia coli} (A:)
Probab=96.86  E-value=0.03  Score=39.67  Aligned_cols=69  Identities=7%  Similarity=-0.022  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             037999999999847788999984430023799889999999999975388999899998851112899
Q gi|254780834|r  480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE  548 (648)
Q Consensus       480 ~~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~e  548 (648)
                      ..-.|+.+|..|+.+|+.+.++...+...+|.++.++.||..+.+.+.++...+...+...+...+.-.
T Consensus        20 ~~~aE~~vLg~ll~~~~~~~~v~~~L~~edF~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~   88 (119)
T 1b79_A           20 SIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLD   88 (119)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHTTCCGGGSSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHTTTTHH
T ss_pred             CHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHH
T ss_conf             889999999999949408999997659998274989999999999850599988999999998679735


No 16 
>>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C (A:)
Probab=96.82  E-value=0.036  Score=39.00  Aligned_cols=70  Identities=10%  Similarity=-0.059  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             3799999999984778899998443002379988999999999997538899989999885111289999
Q gi|254780834|r  481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL  550 (648)
Q Consensus       481 ~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~elL  550 (648)
                      ...|+.+|..++.+|+.+.++...+...+|.++.++.||..+.+.+.++...|...+...+.+.+.-..+
T Consensus        11 ~~aE~~lLg~ll~~~~~~~~v~~~L~~edF~~~~h~~If~~i~~l~~~g~~iD~~tv~~~l~~~~~~~~~   80 (123)
T 3gxv_A           11 QNIERIVLSGIVLANHKIEEVHSVLEPSDFYYPPNGLFFEIALKLHEEDCPIDENFIRQKMPKDKQIKEE   80 (123)
T ss_dssp             HHHHHHHHHHHHHSGGGHHHHHTTCCGGGCSSHHHHHHHHHHHHHHHTTCCCSHHHHHHTSCSSSCCCHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHH
T ss_conf             9999999999996972899999668999829898999999999998456888699999999876981431


No 17 
>>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} (A:1-152)
Probab=96.71  E-value=0.088  Score=35.44  Aligned_cols=66  Identities=12%  Similarity=0.133  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             03799999999984778899998443-0023799889999999999975388999899998851112
Q gi|254780834|r  480 PSLREAALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG  545 (648)
Q Consensus       480 ~~~~E~~LL~llI~~P~l~~~~~e~l-~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~  545 (648)
                      ....|+.+|..++.+|+.+.++.+.+ ...+|.++.++.||..+.+.+..+...|...+...+...+
T Consensus         9 ~~~aE~~vLg~ll~~~~~~~~~~~~ll~~e~F~~~~h~~If~ai~~l~~~~~~iD~~tv~~~l~~~~   75 (152)
T 2q6t_A            9 SLEAEQSVLGSILLDSDVMDEVEGLLPSPEAFYAEAHRKIYAAMQALRSQGRPVDLVTLSEELSRRG   75 (152)
T ss_dssp             CHHHHHHHHHHHHHCGGGHHHHHHHCCSGGGCSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf             8999999999998596489999987588653488889999999999996699999999999985568


No 18 
>>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} (A:1-154)
Probab=96.02  E-value=0.19  Score=32.34  Aligned_cols=63  Identities=14%  Similarity=0.152  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             37999999999847788999984430023799889999999999975388999899998851112
Q gi|254780834|r  481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG  545 (648)
Q Consensus       481 ~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~  545 (648)
                      .-.|+.+|..++.+|+.+.+  -.+...+|.++.++.||..+.+.+.++...+...+...+....
T Consensus        15 ~eaE~~vLg~ll~~~~~~~~--i~L~~edF~~~~h~~If~~i~~l~~~~~~iD~~~l~~~l~~~~   77 (154)
T 3bgw_A           15 EYAEQAVLGSILTEPELIKE--CPLTPEHFSPGKHFNIYFTMQDLDRKGQSVDFTSIAARVGEKL   77 (154)
T ss_dssp             HHHHHHHHHHHHHSTTHHHH--SCCCGGGSCTTHHHHHHHHHHHHHHTTCCCSHHHHHHHSSTTC
T ss_pred             HHHHHHHHHHHHCCHHHHHH--CEECHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             99999999999879745644--1008788888899999999999997699999999999986388


No 19 
>>1t3w_A DNA primase; DNAG, DNA-directed RNA polymerase, E. coli, DNA replication; HET: DNA MSE; 2.80A {Escherichia coli} (A:1-109)
Probab=91.36  E-value=1.2  Score=24.93  Aligned_cols=73  Identities=11%  Similarity=0.004  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999847788999984430023799889999999999975388999899998851112899999999986
Q gi|254780834|r  484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV  557 (648)
Q Consensus       484 E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~elL~~L~~~~  557 (648)
                      .+.+|.++++||.+...+.+.-.-.....+. -.++..+++.+..++......+.++..+....+.++.+..+.
T Consensus        18 ~r~lI~LLLq~P~La~~v~~~~~l~~~~~~g-~~lL~~L~~~~~~~p~~~t~qLLE~~r~t~~~~~L~~LA~~~   90 (109)
T 1t3w_A           18 XRILIGLLVQNPELATLVPPLENLDENKLPG-LGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSXWD   90 (109)
T ss_dssp             HHHHHHHHHHCGGGGGGCCCCTTSCGGGSTT-HHHHHHHHHHHHTSTTCCHHHHHHTTCSGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCHHHHCCCCHHHHHHCCCHH-HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf             9999999986909775198446675445501-499999999998589998999999981986899999998675


No 20 
>>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:1-19,A:67-95)
Probab=90.85  E-value=0.3  Score=30.54  Aligned_cols=28  Identities=29%  Similarity=0.355  Sum_probs=25.9

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf             9899898859997999999999818858
Q gi|254780834|r   73 HLSFLSALLGCSFIESVQRLAAIAGVPL  100 (648)
Q Consensus        73 ~~~f~~~~~~~~f~ea~~~la~~~gi~~  100 (648)
                      +|+||.-+|++++-||...||.|+|+.+
T Consensus        20 aikfvslye~isyfeaa~~lakr~g~kl   47 (48)
T 2au3_A           20 AIKFVSLYEDISYFEAALELAKRYGKKL   47 (48)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHCCCC
T ss_conf             7899999829988999999999708652


No 21 
>>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural genomics, PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} (A:1-141)
Probab=82.54  E-value=3.4  Score=20.86  Aligned_cols=73  Identities=11%  Similarity=0.069  Sum_probs=51.4

Q ss_pred             CCCCCCHHHHHCCCCHHHHHHHHH-C-CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCC
Q ss_conf             355421134321366267898851-2-68189961788662257778888887775369730675257888888997203
Q gi|254780834|r  289 AGVQNVVSSLGTALTEYQLRLLWK-L-SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY  366 (648)
Q Consensus       289 ~G~~n~va~~Gtalt~~~~~~l~r-~-~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~  366 (648)
                      +|.+--|+++|+.-...-...+.+ + .++|+|.++.+..+....++..     +.+.|.++.++.+++-.|+++..+.-
T Consensus         1 ~~M~vli~~iG~~~~~~~~~i~~~~~~~d~v~li~s~~~~~~~~~l~~~-----l~~~~~~~~~~~i~d~~d~~~~~~~i   75 (141)
T 1xmx_A            1 NAMAIHVGIIDQDPVRLVTPLLDHRTVSRHIIFIGDHTQTVIYQRLSDV-----LNKRNISTDFFEIPAGSNTSAIKSAI   75 (141)
T ss_dssp             CTTEEEEEECCSSCHHHHHHHHSTTCCCCEEEEEECGGGHHHHHHHHHH-----HHHTTCEEEEEECCSSSCHHHHHHHH
T ss_pred             CCEEEEEEEECCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHH-----HHHCCCCEEEEECCCCCCHHHHHHHH
T ss_conf             9618999996377221201755478998679999773258899999999-----98659861798457644779999999


No 22 
>>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima MSB8} PDB: 2gaj_A* (A:1-35,A:63-127)
Probab=78.91  E-value=2.9  Score=21.50  Aligned_cols=84  Identities=20%  Similarity=0.220  Sum_probs=55.9

Q ss_pred             CEEEEECCHHHHHHHH-HCCCC-CCHHHHHCCCCHHHHHHHHHCCC--EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             7089971438899987-43554-21134321366267898851268--18996178866225777888888777536973
Q gi|254780834|r  272 SFIILVEGYMDVLSLC-QAGVQ-NVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR  347 (648)
Q Consensus       272 ~~~i~vEGy~Dvi~l~-~~G~~-n~va~~Gtalt~~~~~~l~r~~~--~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~  347 (648)
                      ..+|+||..--.=.+- -.|-. -|||++|   ...|+..|+++.+  .||++-|.|.-|..=++..++.    +.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---kkk~i~~Lkkl~k~adIIiATD~DREGE~Ia~eIl~~----~~~~kp   78 (100)
T 2gai_A            6 KKYIVVESPAKAKTIKSILGNEYEVFASMG---KEKVVEKLKDLAKKGELLIASDMDREGEAIAWHIARV----TNTLGR   78 (100)
T ss_dssp             -CEEEESCHHHHHHHHHHHGGGSEEEECCS---CHHHHHHHHHHHHHSCEEECCCSSHHHHHHHHHHHHH----HTCTTS
T ss_pred             CEEEEECCHHHHHHHHHHCCCCCEEEEECC---HHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHH----HCCCCC
T ss_conf             579998797999999998094989996146---6999999999846898999489981520999999998----588898


Q ss_pred             EEEEECCCCCCHHHHH
Q ss_conf             0675257888888997
Q gi|254780834|r  348 VNFVLLSRGEDPDSFI  363 (648)
Q Consensus       348 v~vv~LP~G~DPDe~i  363 (648)
                      ++=+.+ ....|.+..
T Consensus        79 vkRl~f-sslT~~~I~   93 (100)
T 2gai_A           79 KNRIVF-SEITPRVIR   93 (100)
T ss_dssp             SCBCCC-SSCCHHHHH
T ss_pred             EEEEEE-ECCCHHHHH
T ss_conf             058997-107999999


No 23 
>>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} (A:1-88,A:598-781)
Probab=78.73  E-value=1.5  Score=24.06  Aligned_cols=79  Identities=18%  Similarity=0.148  Sum_probs=56.5

Q ss_pred             CCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             87089971438899987435542113432136626789885126818996178866225777888888777536973067
Q gi|254780834|r  271 SSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF  350 (648)
Q Consensus       271 ~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~v  350 (648)
                      +...+|+-++--         .|...-+|.++|--..-.+.||                  .|         ..|.+|| 
T Consensus        47 ~~~~~i~~~~py---------~~g~~HiGH~~~~~~~Dv~~Ry------------------~r---------~~G~~VK-   89 (272)
T 1ffy_A           47 NETFILHDGPPY---------ANGNLHMGHALNKILKDFIVRY------------------KT---------MQGFYAK-   89 (272)
T ss_dssp             SCBCCEECCCCB---------SSSCCCHHHHHHHHHHHHHHHH------------------HH---------TTTCBCS-
T ss_pred             CCCEEEECCCCC---------CCCCCHHHHHHHHHHHHHHHHH------------------HH---------CCCCCCC-
T ss_conf             996899648999---------8887414377888999999999------------------87---------3799665-


Q ss_pred             EECCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf             5257888888997203668899886414992799999
Q gi|254780834|r  351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK  387 (648)
Q Consensus       351 v~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l~dFl~~  387 (648)
                       .+-++.||++++.++|+|+++-++-.+.+..|+-|.
T Consensus        90 -SlGN~V~p~e~l~~yg~D~lR~~Ll~~~~~~d~~fs  125 (272)
T 1ffy_A           90 -SLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRIS  125 (272)
T ss_dssp             -SSSCCCCHHHHHHHTCHHHHHHHHHTSCTTSCEECC
T ss_pred             -CCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf             -577876621103556864899999736865578644


No 24 
>>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* (C:1-161,C:205-230)
Probab=78.41  E-value=4.4  Score=19.79  Aligned_cols=67  Identities=15%  Similarity=0.302  Sum_probs=38.8

Q ss_pred             CCCCHHHHHCCCCHH-HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH------HHHHCCCCEEEEECCCCCCHHHHH
Q ss_conf             542113432136626-7898851268189961788662257778888887------775369730675257888888997
Q gi|254780834|r  291 VQNVVSSLGTALTEY-QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVL------CHLIPGNRVNFVLLSRGEDPDSFI  363 (648)
Q Consensus       291 ~~n~va~~Gtalt~~-~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l------~~l~~g~~v~vv~LP~G~DPDe~i  363 (648)
                      |.+-+..+|+.+... ++..| || .+|+|+-|.|.-|..  .|++-+..      ++++.|. |+ +..|..++||.+-
T Consensus        97 i~~l~~alG~~~~~~~d~~~l-RY-gkIiImtDaD~DG~H--I~~Llltff~~~~p~Li~~G~-vy-ia~p~~~~~~~l~  170 (187)
T 3k9f_C           97 INTMIYTIGAGVGADFSIEDA-NY-DKIIIMTDADTDGAH--IQTLLLTFFYRYMRPLVEAGH-VY-IALPGEMNADQLW  170 (187)
T ss_dssp             HHHHHHHHCSCC--CCCCC-C-CC-SEEEEECCSSHHHHH--HHHHHHHHHHHTSHHHHHTTC-EE-EECCGGSCHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCC-CC-CEEEEEECCCCCCHH--HHHHHHHHHHHHHHHHCCCCC-EE-EECCCCCCHHHHH
T ss_conf             767876406667887876546-76-707998579876221--577999999987498702894-56-7538768988999


No 25 
>>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} (A:66-137)
Probab=76.62  E-value=3  Score=21.39  Aligned_cols=50  Identities=22%  Similarity=0.322  Sum_probs=32.9

Q ss_pred             HHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCC
Q ss_conf             455420599734523201210034654100001671688897077858885010014
Q gi|254780834|r  170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS  226 (648)
Q Consensus       170 ~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~  226 (648)
                      +..|.+.|++++.-.+.|......+|. ++      .++|.+|..|++||.--|-=+
T Consensus        13 y~~L~~RgiteeTCrK~gY~V~~~~g~-~v------qva~Y~D~~G~lVaQKvR~k~   62 (72)
T 1nui_A           13 YSALTARGISKETCQKAGYWIAKVDGV-MY------QVADYRDQNGNIVSQKVRDKD   62 (72)
T ss_dssp             CCCBGGGTBCHHHHHHHTEEEEEETTE-EE------EEEEEECTTSCEEEEEEECTT
T ss_pred             HHHHHHCCCCHHHHHHCEEEEEECCCC-EE------EEEEEECCCCCEEEEEEECCC
T ss_conf             335757789989963155999964992-47------998656799988645762045


No 26 
>>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} (A:1-74)
Probab=75.63  E-value=3.5  Score=20.69  Aligned_cols=50  Identities=22%  Similarity=0.322  Sum_probs=33.2

Q ss_pred             HHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCC
Q ss_conf             455420599734523201210034654100001671688897077858885010014
Q gi|254780834|r  170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS  226 (648)
Q Consensus       170 ~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~  226 (648)
                      +..|...|++++.-.+.|..+...+|. ++      .++|.+|..|++|+.--|-=+
T Consensus        15 y~~L~aRgIteeTCrK~gY~V~~~~g~-~v------qva~Y~D~~G~lVaQKvR~k~   64 (74)
T 1q57_A           15 YSALTARGISKETCQKAGYWIAKVDGV-MY------QVADYRDQNGNIVSQKVRDKD   64 (74)
T ss_dssp             CCCBTTTTBCHHHHHHHTEEECCBTTB-CE------EEEEEECTTSCEEEEEEEETT
T ss_pred             CCHHHHCCCCHHHHHHCCEEEECCCCC-EE------EEEEEECCCCCEEEEEEECCC
T ss_conf             111432998999999749078613992-78------996458979949999975799


No 27 
>>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} (A:1-43,A:99-124)
Probab=72.85  E-value=2.6  Score=21.94  Aligned_cols=25  Identities=28%  Similarity=0.546  Sum_probs=16.6

Q ss_pred             EC-CCCCCCCCCEEEECCCCEEEECCCCC
Q ss_conf             34-58888587879817897467136888
Q gi|254780834|r   42 CC-PFHDEKTPSFHCNDSKGFYYCFSCHV   69 (648)
Q Consensus        42 ~c-Pfh~ektpsf~v~~~~~~~~cf~c~~   69 (648)
                      .| ||-++--   .-..+.|+|+|-+||.
T Consensus         3 FcsPFtGeyy---~n~~e~GvYvC~~Cg~   28 (69)
T 2kao_A            3 FCSFFGGEVF---QNHFEPGVYVCAKCSY   28 (69)
T ss_dssp             CCCCCCSCTT---TTCCCCCEEEESSSCC
T ss_pred             CCCCCCCCHH---CCCCCCEEEEECCCCC
T ss_conf             4346557210---2889985999479996


No 28 
>>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics, phosphoprotein phosphatase; 3.30A {Arabidopsis thaliana} (A:)
Probab=70.16  E-value=3  Score=21.31  Aligned_cols=57  Identities=14%  Similarity=0.139  Sum_probs=42.3

Q ss_pred             EEECCCCCCCCCCEEE--------------ECCCC-EEEEC-CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             7534588885878798--------------17897-46713-6888878989989885999799999999981
Q gi|254780834|r   40 WACCPFHDEKTPSFHC--------------NDSKG-FYYCF-SCHVKGDHLSFLSALLGCSFIESVQRLAAIA   96 (648)
Q Consensus        40 ~~~cPfh~ektpsf~v--------------~~~~~-~~~cf-~c~~~gd~~~f~~~~~~~~f~ea~~~la~~~   96 (648)
                      .-.-|+-+..+|+...              .+.+. .-||- |+|.+|-++-++|...|+++.+|+..+..+-
T Consensus        60 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~VlVHC~~G~~RS~~via~~m~~~g~s~~~A~~~v~~~R  132 (151)
T 1xri_A           60 LFQFGIEGNKEPFVNIPDHKIRXALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSIFDEYQRFA  132 (151)
T ss_dssp             EEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECSSSSSHHHHHHHHHHHHTTBCHHHHHHHHHHHH
T ss_pred             EECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf             5346742343432001099999999999716699888776899507899999999994999999999999976


No 29 
>>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3gb8_A (A:558-768)
Probab=66.73  E-value=7.6  Score=17.63  Aligned_cols=80  Identities=11%  Similarity=0.089  Sum_probs=62.2

Q ss_pred             CCHHHHHHCCCHHHHHHHHHHC------------CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             8888997203668899886414------------9927999999985302331457999999999885417998999999
Q gi|254780834|r  357 EDPDSFIRCYGKTAFEKLIVES------------LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY  424 (648)
Q Consensus       357 ~DPDe~ir~~G~eaf~~ll~~A------------~~l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~y  424 (648)
                      .||+.-|+.+...+|..+.+++            .|+++-+++.+..-...-.+..+..+...+-.++..+++...+..|
T Consensus        19 ~d~~~~Vqe~A~~Al~~iae~~~~~~~~~~~~~~~p~l~~ii~~l~~~~~~l~~~~~~~~~e~i~~i~~~v~~~~~~~~~   98 (211)
T 3gjx_A           19 HETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHL   98 (211)
T ss_dssp             TCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             18988999999999999999999998641403547899999999888875279999999999999999806746568999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999988765
Q gi|254780834|r  425 SQAIRDRLQQLF  436 (648)
Q Consensus       425 l~~la~~L~~~~  436 (648)
                      +..+-..+....
T Consensus        99 ~~~lm~~l~~~~  110 (211)
T 3gjx_A           99 IEKYMLLPNQVW  110 (211)
T ss_dssp             HHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999998889999


No 30 
>>1d3y_A DNA topoisomerase VI A subunit; DNA binding protein, SPO11 homolog; HET: DNA; 2.00A {Methanococcus jannaschii} (A:76-301)
Probab=64.70  E-value=6.3  Score=18.40  Aligned_cols=95  Identities=20%  Similarity=0.189  Sum_probs=52.5

Q ss_pred             CCCEEEEECCHHHHHHHHHCCCCC----C-HHHHHC--CCCHHHHHHHHHC-CCEEEEEECCCCCC-HHHHH--HHHHHH
Q ss_conf             787089971438899987435542----1-134321--3662678988512-68189961788662-25777--888888
Q gi|254780834|r  270 SSSFIILVEGYMDVLSLCQAGVQN----V-VSSLGT--ALTEYQLRLLWKL-SPRIVLCFDGDDPG-LRAAY--KAIDLV  338 (648)
Q Consensus       270 ~~~~~i~vEGy~Dvi~l~~~G~~n----~-va~~Gt--alt~~~~~~l~r~-~~~vvl~fDgD~AG-~kAa~--Ra~e~~  338 (648)
                      ..+.+++||=..=.-.|.+.++..    . |-.-|-  ..|..=++.|.+- .-.++.+.|+|.+| ...+.  +..-..
T Consensus        46 ~~~~VlvVEk~avF~~L~~~~~~~~~~~ilIt~kGyPd~~tr~~l~~L~~~~~~p~~~~~D~Dp~G~~~I~~~y~~gs~~  125 (226)
T 1d3y_A           46 DADFILAIETSGMFARLNAERFWDKHNCILVSLKGVPARATRRFIKRLHEEHDLPVLVFTDGDPYGYLNIYRTLKVGSGK  125 (226)
T ss_dssp             CCSEEEEESCHHHHHHHHHTTHHHHTTEEEEECCSSCCHHHHHHHHHHHHHHTCCEEEECCBSHHHHHTHHHHHHC----
T ss_pred             CCCEEEEEEEHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCC
T ss_conf             46689999632089999864755225566872788896899999999866219987999758861089999999961122


Q ss_pred             HHHHHCCCCEEEEEC-CCCCCHHHHHHCC
Q ss_conf             777536973067525-7888888997203
Q gi|254780834|r  339 LCHLIPGNRVNFVLL-SRGEDPDSFIRCY  366 (648)
Q Consensus       339 l~~l~~g~~v~vv~L-P~G~DPDe~ir~~  366 (648)
                      ...  ....+.+-.| |-|.+|+++.+..
T Consensus       126 ~~~--~~~~~~~p~l~~~g~~~~~~~~~~  152 (226)
T 1d3y_A          126 AIH--LADKLSIPAARLIGVTPQDIIDYD  152 (226)
T ss_dssp             -------CTTCCTTCEEEESCHHHHHHTT
T ss_pred             CCC--CCCCCCCCCCEECCCCHHHHHHCC
T ss_conf             321--121234777779047799974015


No 31 
>>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} (A:67-175)
Probab=64.64  E-value=8.2  Score=17.32  Aligned_cols=84  Identities=19%  Similarity=0.157  Sum_probs=55.9

Q ss_pred             CCCCEEEEECCHHHHHHHHHCCCCCCH-HHHHC------CCCHHHHH---HHHHC--CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf             678708997143889998743554211-34321------36626789---88512--68189961788662257778888
Q gi|254780834|r  269 NSSSFIILVEGYMDVLSLCQAGVQNVV-SSLGT------ALTEYQLR---LLWKL--SPRIVLCFDGDDPGLRAAYKAID  336 (648)
Q Consensus       269 ~~~~~~i~vEGy~Dvi~l~~~G~~n~v-a~~Gt------alt~~~~~---~l~r~--~~~vvl~fDgD~AG~kAa~Ra~e  336 (648)
                      +..+.+.|||-.-|++++-+.|+-+.+ =.||.      ..+++++.   ++.|.  .++|||++...--|+--|.=..+
T Consensus        11 Rd~~~lcVVE~~~Di~~iE~s~~y~G~YhVL~g~isp~~gi~p~~l~~~~L~~r~~~i~EvIlA~s~t~EGe~Ta~yi~~   90 (109)
T 1vdd_A           11 RDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQR   90 (109)
T ss_dssp             SCTTEEEEESSHHHHHHTTTTSSCCSEEEECSSCCBGGGTBCTTTSTTGGGGGGCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             77526999956899899985122221042305744734488852011256677624776799982698650899999999


Q ss_pred             HHHHHHHCCCCEEEEECCCCC
Q ss_conf             887775369730675257888
Q gi|254780834|r  337 LVLCHLIPGNRVNFVLLSRGE  357 (648)
Q Consensus       337 ~~l~~l~~g~~v~vv~LP~G~  357 (648)
                      +     -....++|-.|-.|.
T Consensus        91 ~-----lk~~~ikvtrlA~Gi  106 (109)
T 1vdd_A           91 L-----LEPLGAAISRIAYGV  106 (109)
T ss_dssp             H-----HTTSSCEEEECCBCB
T ss_pred             H-----HHHCCCEEEEECCCC
T ss_conf             8-----423496187602268


No 32 
>>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol phosphatase, hydrolase; 2.30A {Mitsuokella multacida} (A:349-420,A:490-629)
Probab=63.19  E-value=8.6  Score=17.11  Aligned_cols=90  Identities=12%  Similarity=0.043  Sum_probs=52.8

Q ss_pred             HHHHHHHHHC--CHHHH--HHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEE----------C-C-CCEEEE-CCCC
Q ss_conf             8999998748--88887--541222101588777775575345888858787981----------7-8-974671-3688
Q gi|254780834|r    6 DFIKDLLIHI--PISNL--IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN----------D-S-KGFYYC-FSCH   68 (648)
Q Consensus         6 ~~i~~i~~~~--~i~~v--v~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~----------~-~-~~~~~c-f~c~   68 (648)
                      ..+..|++++  +|+.|  =-+.-..++.|-.     | --.|+-+...|+...-          + + +=..|| -|.|
T Consensus        52 ~~~~~~~~~~~~~~~~~dlr~e~e~~~~~gi~-----y-~~i~~~D~~~P~~e~i~~~v~~i~~~~~~~~VlVHC~aG~G  125 (212)
T 3f41_A           52 AMLPVLKQQAKGPIYIMDLRQEQQLVEKNGLH-----Y-YRIAATDHIWPSAANIDEFINFTRTMPANAWLHFHCQAGAG  125 (212)
T ss_dssp             HHHHHHHHHCCSCEEEEEEECHHHHHHHTTCE-----E-EEEEECTTSCCCHHHHHHHHHHHHHSCTTCEEEEECSSSSH
T ss_pred             HHHHHHCCCCCCCEEEEECCCHHHHHHCCCCE-----E-EEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             99998443789848999888799997368963-----8-98436767798878999999999738898559998899987


Q ss_pred             CCCCHHHHH-H-HHCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             887898998-9-88599979999999998188587
Q gi|254780834|r   69 VKGDHLSFL-S-ALLGCSFIESVQRLAAIAGVPLP  101 (648)
Q Consensus        69 ~~gd~~~f~-~-~~~~~~f~ea~~~la~~~gi~~~  101 (648)
                      ..|-++... | +..++++.||+..+...-+.-++
T Consensus       126 RTgtvia~yli~~~~~~s~~eai~~ir~~R~~~~~  160 (212)
T 3f41_A          126 RTTAYMAMYDMMKNPDVSLGDILSRQYLLGGNYVA  160 (212)
T ss_dssp             HHHHHHHHHHHHHCTTSCHHHHHHHHHHHTSCCTT
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHH
T ss_conf             89899999998747771278999999885530222


No 33 
>>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine phosphatase, P-loop, hydrolase; HET: PO4; 1.50A {Autographa californicanucleopolyhedrovirus} (A:)
Probab=62.73  E-value=4.6  Score=19.60  Aligned_cols=24  Identities=8%  Similarity=-0.190  Sum_probs=12.6

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf             681899617886622577788888
Q gi|254780834|r  314 SPRIVLCFDGDDPGLRAAYKAIDL  337 (648)
Q Consensus       314 ~~~vvl~fDgD~AG~kAa~Ra~e~  337 (648)
                      .+.+++.-..+.-|+-+++=++.+
T Consensus       112 ~~~~v~VHC~~G~gRSgt~i~a~l  135 (169)
T 1yn9_A          112 PGMLVGVHCTHGINRTGYMVCRYL  135 (169)
T ss_dssp             TTSEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             998599996047785699999999


No 34 
>>3iac_A Glucuronate isomerase; IDP02065, structural genomics, center for structural genomics of infectious diseases, csgid; 2.22A {Salmonella typhimurium} (A:28-49,A:143-237)
Probab=62.15  E-value=9  Score=16.96  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=13.6

Q ss_pred             HHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf             898859997999999999818858
Q gi|254780834|r   77 LSALLGCSFIESVQRLAAIAGVPL  100 (648)
Q Consensus        77 ~~~~~~~~f~ea~~~la~~~gi~~  100 (648)
                      +|+.++-+|.+-|..|++.+|+++
T Consensus        73 al~i~~~~f~~yv~kL~e~sg~~I   96 (117)
T 3iac_A           73 VFKIELDGFVDYLRKLEAAADVSI   96 (117)
T ss_dssp             HHCTTSTTHHHHHHHHHHHHTCCC
T ss_pred             HCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             026561659999999999859886


No 35 
>>2vbc_A Dengue 4 NS3 FULL-length protein; transmembrane, RNA replication, NS2B-NS3 protease; 3.15A {Dengue virus type 4} (A:88-175)
Probab=61.81  E-value=5.3  Score=19.07  Aligned_cols=19  Identities=32%  Similarity=0.539  Sum_probs=15.9

Q ss_pred             EEEEECCCCEEEEECCCCC
Q ss_conf             8897077858885010014
Q gi|254780834|r  208 FPIRSSRGQVIAFGGRTLS  226 (648)
Q Consensus       208 fPi~~~~g~~i~f~gR~l~  226 (648)
                      =||.|..|+|||+.|-=+-
T Consensus        50 SPIin~~G~VvGLYGNGv~   68 (88)
T 2vbc_A           50 SPIINKKGKVIGLYGNGVV   68 (88)
T ss_dssp             CEEECSSSSEEEEEECCCC
T ss_pred             CCCCCCCCCEEEEEEEEEE
T ss_conf             8738899968998601788


No 36 
>>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens} (A:)
Probab=60.65  E-value=5.9  Score=18.66  Aligned_cols=60  Identities=10%  Similarity=0.016  Sum_probs=45.1

Q ss_pred             CEEEECCCCCCCCCCEEE------------ECCCC-EEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             557534588885878798------------17897-46713-6888878-9899898859997999999999818
Q gi|254780834|r   38 DYWACCPFHDEKTPSFHC------------NDSKG-FYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIAG   97 (648)
Q Consensus        38 ~~~~~cPfh~ektpsf~v------------~~~~~-~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~g   97 (648)
                      -..-..|+++..+|+..-            ...+. .-||- |+|.+|- +.-++|...++++.+|++.+.++-.
T Consensus        57 i~~~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~VlVHC~~G~~Rsg~~~~~~Lm~~~~~~~~~a~~~ir~~R~  131 (151)
T 2img_A           57 LTLHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTXLACYLVKERGLAAGDAIAEIRRLRP  131 (151)
T ss_dssp             SEEEECCCCTTCCCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHST
T ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf             599955642689979999999999999988449819998278876479999999998619899999999998788


No 37 
>>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specificity phosphatase; 1.88A {Homo sapiens} (A:1-147)
Probab=60.38  E-value=6  Score=18.59  Aligned_cols=36  Identities=11%  Similarity=0.238  Sum_probs=23.7

Q ss_pred             EEEE-CCCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             4671-36888878-989989885999799999999981
Q gi|254780834|r   61 FYYC-FSCHVKGD-HLSFLSALLGCSFIESVQRLAAIA   96 (648)
Q Consensus        61 ~~~c-f~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~   96 (648)
                      .-|| -|.|.+|- ++-++|...++++.||++.+-.+-
T Consensus       107 lVHC~~G~~RS~~vv~ayLm~~~~~~~~~A~~~v~~~R  144 (147)
T 2wgp_A          107 LVHCAAGVSRSATLCIAYLMKFHNVCLLEAYNWVKARR  144 (147)
T ss_dssp             EEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             98887656508999999999983999999999999979


No 38 
>>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus} (A:)
Probab=60.05  E-value=7.6  Score=17.63  Aligned_cols=73  Identities=15%  Similarity=0.093  Sum_probs=44.8

Q ss_pred             HHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEE------------ECCCC-EEEEC-CCCCCCCHH-HHHHHHCCCCHH
Q ss_conf             4122210158877777557534588885878798------------17897-46713-688887898-998988599979
Q gi|254780834|r   22 GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC------------NDSKG-FYYCF-SCHVKGDHL-SFLSALLGCSFI   86 (648)
Q Consensus        22 ~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v------------~~~~~-~~~cf-~c~~~gd~~-~f~~~~~~~~f~   86 (648)
                      .+.-.....+-     .|..+.++.+...|....            ...+. .-||- |.+.+|-++ -++|...|+++.
T Consensus        46 ~e~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yLm~~~~~~~~  120 (164)
T 2hcm_A           46 RQQPGPRAPGV-----AELRVPVFDDPAEDLLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSRSAAVCTAYLMRHRGHSLD  120 (164)
T ss_dssp             SSCCCCCCTTC-----EEEECCCCSCTTSCCHHHHHHHHHHHHHHHHTTCEEEEEESSSSHHHHHHHHHHHHHHSCCCHH
T ss_pred             CCCCCCCCCCC-----EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCCCHH
T ss_conf             25664568886-----5999705788435431117999999988875133079984577860799999999998696999


Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             9999999981885
Q gi|254780834|r   87 ESVQRLAAIAGVP   99 (648)
Q Consensus        87 ea~~~la~~~gi~   99 (648)
                      ||++.+..+-..-
T Consensus       121 eAl~~v~~~r~~~  133 (164)
T 2hcm_A          121 RAFQMVKSARPVA  133 (164)
T ss_dssp             HHHHHHHHHCTTC
T ss_pred             HHHHHHHHHCCCC
T ss_conf             9999999989977


No 39 
>>2zbk_A Type II DNA topoisomerase VI subunit A; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} (A:154-389)
Probab=60.05  E-value=6.4  Score=18.31  Aligned_cols=98  Identities=15%  Similarity=0.017  Sum_probs=54.6

Q ss_pred             CCEEEEECCHHHHHHHHHCCCC---CCHHHHHC----CCCHHHHHHHHHCCC-EEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             8708997143889998743554---21134321----366267898851268-189961788662257778888887775
Q gi|254780834|r  271 SSFIILVEGYMDVLSLCQAGVQ---NVVSSLGT----ALTEYQLRLLWKLSP-RIVLCFDGDDPGLRAAYKAIDLVLCHL  342 (648)
Q Consensus       271 ~~~~i~vEGy~Dvi~l~~~G~~---n~va~~Gt----alt~~~~~~l~r~~~-~vvl~fDgD~AG~kAa~Ra~e~~l~~l  342 (648)
                      ...+++||=..=.-.|.+.++.   +++...|-    .-|..=++.|.+-.. .++.+.|.|..|..=+..-........
T Consensus        49 ~~~VlvVEn~~~F~~L~~~~~~~~~~~ilI~~~G~p~~~tr~ll~~L~~~~~~~i~~~gD~Dp~Gl~I~~~~~~~~~~~~  128 (236)
T 2zbk_A           49 AEFVLVVEKDAVFQQLHRAGFWKQYKSILITSAGQPDRATRRFVRRLNEELKLPVYILTDADPYGWYIFSVFRIGSISLS  128 (236)
T ss_dssp             CSCEEEESCHHHHHHHHTTTHHHHTTCEEEECCSSCCTTHHHHHHHHHHHSCCCEEEECCSSHHHHHHHHHHTSCSCC--
T ss_pred             CCEEEEEECCHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf             66899992523899998616343367468956888987999999999753288779996688138899999974133223


Q ss_pred             HCCCCEEEEEC-CCCCCHHHHHHCCCH
Q ss_conf             36973067525-788888899720366
Q gi|254780834|r  343 IPGNRVNFVLL-SRGEDPDSFIRCYGK  368 (648)
Q Consensus       343 ~~g~~v~vv~L-P~G~DPDe~ir~~G~  368 (648)
                      -..-.+.+-.+ |-|+||.++.+....
T Consensus       129 ~~~~~~~~p~l~~~g~~~~~~~~~~~~  155 (236)
T 2zbk_A          129 YESERLATPDAKFLGVSMGDIFGNSRK  155 (236)
T ss_dssp             ---CCCSCSSCEECCCCHHHHHCCSSS
T ss_pred             CCCCCCCCCCCEEECCCHHHHHHCCCC
T ss_conf             101246688508931659997412567


No 40 
>>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} (A:1-39,A:149-206,A:316-372)
Probab=58.79  E-value=5.9  Score=18.60  Aligned_cols=20  Identities=15%  Similarity=0.268  Sum_probs=11.1

Q ss_pred             HHHHHCCCCHHHHCCCCCCC
Q ss_conf             99985068853510124422
Q gi|254780834|r  142 YYLDERGIDSHAIEMFKLGY  161 (648)
Q Consensus       142 ~yl~~Rg~~~~~~~~f~lG~  161 (648)
                      .||.++|++--.+++..++.
T Consensus        19 ~~l~~~g~~v~~~e~~~~~~   38 (154)
T 2uzz_A           19 YYATRAGLNVLMTDAHMPPH   38 (154)
T ss_dssp             HHHHHTTCCEEEECSSCSSS
T ss_pred             HHHHHCCCCEEEEECCCCCC
T ss_conf             99997899589993899985


No 41 
>>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} (A:)
Probab=58.50  E-value=2.6  Score=21.87  Aligned_cols=11  Identities=45%  Similarity=0.996  Sum_probs=8.8

Q ss_pred             EECCCCCCCCH
Q ss_conf             71368888789
Q gi|254780834|r   63 YCFSCHVKGDH   73 (648)
Q Consensus        63 ~cf~c~~~gd~   73 (648)
                      -||+||+.|.+
T Consensus         4 vcfscgktghi   14 (26)
T 1dsq_A            4 VCFSCGKTGHI   14 (26)
T ss_dssp             BCTTTCCBSSC
T ss_pred             EEEECCCCCCC
T ss_conf             77756876651


No 42 
>>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA; 1.67A {Homo sapiens} (A:1-128)
Probab=57.73  E-value=6.4  Score=18.29  Aligned_cols=36  Identities=11%  Similarity=0.215  Sum_probs=28.1

Q ss_pred             EEEECC-CCCCC-CHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             467136-88887-8989989885999799999999981
Q gi|254780834|r   61 FYYCFS-CHVKG-DHLSFLSALLGCSFIESVQRLAAIA   96 (648)
Q Consensus        61 ~~~cf~-c~~~g-d~~~f~~~~~~~~f~ea~~~la~~~   96 (648)
                      +.||-+ .|.+| =++-++|..+|+++.+|++.+..+-
T Consensus        89 lVHC~~G~~RS~~i~~ayLm~~~~~s~~~A~~~v~~~R  126 (128)
T 2e0t_A           89 LVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHR  126 (128)
T ss_dssp             EEECSSSSHHHHHHHHHHHHHHSCCCHHHHHHHHHHTS
T ss_pred             EEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf             99844568608999999999860999999999999828


No 43 
>>1svp_A Sindbis virus capsid protein; chymotrypsin-like serine, mutant, coat protein, viral protein; 2.00A {Sindbis virus} (A:1-72)
Probab=56.93  E-value=7.3  Score=17.80  Aligned_cols=23  Identities=22%  Similarity=0.536  Sum_probs=18.6

Q ss_pred             EEEEEEECCCCEEE----EECCCCCCC
Q ss_conf             68889707785888----501001465
Q gi|254780834|r  206 LIFPIRSSRGQVIA----FGGRTLSKG  228 (648)
Q Consensus       206 i~fPi~~~~g~~i~----f~gR~l~~~  228 (648)
                      =+|||.++.|+|+|    .|||++.+-
T Consensus         9 ~~F~v~~~dG~V~GyA~~vggkv~KP~   35 (72)
T 1svp_A            9 RLFDVKNEDGDVIGHALAMEGKVMKPL   35 (72)
T ss_dssp             SEEEEECTTSCEEEEEEEETTEEEEET
T ss_pred             CCCCCCCCCCCEEEEEEEECCEEECCC
T ss_conf             656533247836788899747640232


No 44 
>>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} (X:1-32,X:89-156)
Probab=56.85  E-value=11  Score=16.26  Aligned_cols=85  Identities=22%  Similarity=0.251  Sum_probs=55.9

Q ss_pred             CEEEEECCHHHHHHHH-HCCCCCCH-HHHHCCCCHHHHHHHHHC---CCEEEEEECCCCCCHHHHHHHHHHHHHHHHC-C
Q ss_conf             7089971438899987-43554211-343213662678988512---6818996178866225777888888777536-9
Q gi|254780834|r  272 SFIILVEGYMDVLSLC-QAGVQNVV-SSLGTALTEYQLRLLWKL---SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP-G  345 (648)
Q Consensus       272 ~~~i~vEGy~Dvi~l~-~~G~~n~v-a~~Gtalt~~~~~~l~r~---~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~-g  345 (648)
                      +.+++||...-+-... ..|-..|| .+.|   ...|+..|+++   +++||+|-|.|.=|..=++..++.+    .. +
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kk~l~~Ikkl~k~ad~IIiATD~DREGE~Ia~eI~~~~----~~~~   75 (100)
T 1mw9_X            3 KALVIVESPAKAKTINKYLGSDYVVKSSVG---KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVI----GGDD   75 (100)
T ss_dssp             CEEEEESCHHHHHHHHTTSCTTEEEEECCS---CHHHHHHHHHHHHTCSEEEECCCSSHHHHHHHHHHHHHH----CSCG
T ss_pred             CEEEEECCHHHHHHHHHHHCCCCEEEECCC---HHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHH----CCCC
T ss_conf             839998989999999998299989995467---799999999998459999988898733539999999996----6899


Q ss_pred             CCEEEEECCCCCCHHHHHH
Q ss_conf             7306752578888889972
Q gi|254780834|r  346 NRVNFVLLSRGEDPDSFIR  364 (648)
Q Consensus       346 ~~v~vv~LP~G~DPDe~ir  364 (648)
                      ..++=+.+ ....|++..+
T Consensus        76 k~vkRl~f-sslT~~~I~~   93 (100)
T 1mw9_X           76 ARYSRVVF-NEITKNAIRQ   93 (100)
T ss_dssp             GGEEECCC-SSCSHHHHHH
T ss_pred             CCEEEEEE-CCCCHHHHHH
T ss_conf             86599996-6689999999


No 45 
>>2fp7_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, substrate-based inhibitor, viral protein/protease complex; HET: NDL; 1.68A {West nile virus} (B:)
Probab=55.74  E-value=7.1  Score=17.88  Aligned_cols=17  Identities=35%  Similarity=0.618  Sum_probs=14.6

Q ss_pred             EEEECCCCEEEEECCCC
Q ss_conf             89707785888501001
Q gi|254780834|r  209 PIRSSRGQVIAFGGRTL  225 (648)
Q Consensus       209 Pi~~~~g~~i~f~gR~l  225 (648)
                      ||.|..|+|||+.|--+
T Consensus       123 PIin~~G~VVGLYGNGv  139 (172)
T 2fp7_B          123 PIVDKNGDVIGLYGNGV  139 (172)
T ss_dssp             EEECTTSCEEEESCCEE
T ss_pred             CEECCCCCEEEEECCEE
T ss_conf             63745896999853549


No 46 
>>2q01_A Uronate isomerase; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics; 2.34A {Caulobacter crescentus CB15} (A:35-55,A:154-246)
Probab=55.06  E-value=11  Score=16.03  Aligned_cols=23  Identities=13%  Similarity=0.114  Sum_probs=11.6

Q ss_pred             HHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf             98859997999999999818858
Q gi|254780834|r   78 SALLGCSFIESVQRLAAIAGVPL  100 (648)
Q Consensus        78 ~~~~~~~f~ea~~~la~~~gi~~  100 (648)
                      |+.++-+|.+-|+.|++.+|+++
T Consensus        71 l~i~~~~f~~yi~kL~~~sg~~I   93 (114)
T 2q01_A           71 IDFEDERSPRAFERFAETSGQDV   93 (114)
T ss_dssp             TCTTCTTHHHHHHHHHHHHTSCT
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             26677107999999999709886


No 47 
>>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} (A:478-588)
Probab=54.76  E-value=11  Score=15.99  Aligned_cols=80  Identities=10%  Similarity=-0.008  Sum_probs=60.4

Q ss_pred             CCCCHHHHHHCCCHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             888888997203668899886414--992799999998530233145799999999988541799899999999999998
Q gi|254780834|r  355 RGEDPDSFIRCYGKTAFEKLIVES--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL  432 (648)
Q Consensus       355 ~G~DPDe~ir~~G~eaf~~ll~~A--~~l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~yl~~la~~L  432 (648)
                      .=.|||..+|.....++..+...-  ....+.++..+.+...-+++.-|..+..-+..++..+++.......+..+...+
T Consensus        11 ~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l   90 (111)
T 1b3u_A           11 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLT   90 (111)
T ss_dssp             TTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHT
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_conf             86499878999999999999998596878999999999886999879999999999999987080758999999999976


Q ss_pred             HH
Q ss_conf             87
Q gi|254780834|r  433 QQ  434 (648)
Q Consensus       433 ~~  434 (648)
                      ..
T Consensus        91 ~d   92 (111)
T 1b3u_A           91 QD   92 (111)
T ss_dssp             TC
T ss_pred             CC
T ss_conf             79


No 48 
>>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (J:)
Probab=54.58  E-value=12  Score=15.97  Aligned_cols=30  Identities=37%  Similarity=0.575  Sum_probs=17.2

Q ss_pred             EECCCCC-CCCHH-HHHHHHCC--CCHHHHHHHH
Q ss_conf             7136888-87898-99898859--9979999999
Q gi|254780834|r   63 YCFSCHV-KGDHL-SFLSALLG--CSFIESVQRL   92 (648)
Q Consensus        63 ~cf~c~~-~gd~~-~f~~~~~~--~~f~ea~~~l   92 (648)
                      .||+||+ =||.+ .|....+.  .+-.+|+-.|
T Consensus         6 RCFTCGkvig~~we~y~~~~~~ge~~~~~~LD~L   39 (70)
T 1twf_J            6 RCFSCGKVVGDKWESYLNLLQEDELDEGTALSRL   39 (70)
T ss_dssp             BCTTTCCBCTTCHHHHHHHHHTSCCCHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHC
T ss_conf             6578986818889999999970798788999984


No 49 
>>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB: 2i6i_A 2i6m_A 2i6o_A* 2dxp_A* 2i6p_A* (A:)
Probab=52.77  E-value=7.2  Score=17.83  Aligned_cols=40  Identities=15%  Similarity=0.227  Sum_probs=28.4

Q ss_pred             EEEEC-CCCCCCCHH-HHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf             46713-688887898-99898859997999999999818858
Q gi|254780834|r   61 FYYCF-SCHVKGDHL-SFLSALLGCSFIESVQRLAAIAGVPL  100 (648)
Q Consensus        61 ~~~cf-~c~~~gd~~-~f~~~~~~~~f~ea~~~la~~~gi~~  100 (648)
                      .-||- |+|.+|-++ -++|...+++..+|++.+-.+=..-+
T Consensus        93 lVHC~~G~gRSg~~~~~yl~~~~~~~~~~a~~~lr~~R~~~i  134 (161)
T 2i6j_A           93 LVHCVGGIGRTGTILASYLILTEGLEVESAIDEVRLVRPGAV  134 (161)
T ss_dssp             EEECSSSSHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCS
T ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf             999724767069999999999827999999999998689998


No 50 
>>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens} (A:)
Probab=51.58  E-value=13  Score=15.59  Aligned_cols=63  Identities=5%  Similarity=-0.103  Sum_probs=41.6

Q ss_pred             CEEEECCCCCCCCCCEEE------------ECCC-CEEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf             557534588885878798------------1789-746713-6888878-9899898859997999999999818858
Q gi|254780834|r   38 DYWACCPFHDEKTPSFHC------------NDSK-GFYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIAGVPL  100 (648)
Q Consensus        38 ~~~~~cPfh~ektpsf~v------------~~~~-~~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~gi~~  100 (648)
                      .|..++.+-++.+|.+.-            ...+ -.-||. |-|.+|- |+-++|..+++++.||+..+..+-....
T Consensus        51 ~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~RS~~~v~aYLm~~~~~~~~~A~~~v~~~R~~~~  128 (211)
T 2g6z_A           51 HYKWIPVEDSHTADISSHFQEAIDFIDCVREKGGKVLVHSEAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRRSMVS  128 (211)
T ss_dssp             EEEECCCCSSTTSCCGGGHHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHCTTCC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf             699985266856899999999998656777337518998788787309999999998629999999999999899668


No 51 
>>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... (A:154-258)
Probab=51.53  E-value=13  Score=15.59  Aligned_cols=47  Identities=17%  Similarity=0.169  Sum_probs=35.1

Q ss_pred             CCEEEEE---ECCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCHH
Q ss_conf             6818996---17886622577788888877753697-30675257888888
Q gi|254780834|r  314 SPRIVLC---FDGDDPGLRAAYKAIDLVLCHLIPGN-RVNFVLLSRGEDPD  360 (648)
Q Consensus       314 ~~~vvl~---fDgD~AG~kAa~Ra~e~~l~~l~~g~-~v~vv~LP~G~DPD  360 (648)
                      .+.|++.   .=||++|+|=.-+|.+.++..++... .+.++.|..+...|
T Consensus        53 G~~v~lRF~~~TGDAmGmNMvtkat~~~~~~i~~~~p~~~~~~lsGN~ctD  103 (105)
T 2r4f_A           53 GRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTD  103 (105)
T ss_dssp             TTEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHCTTCEEEESCCSCSCC
T ss_pred             CCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHH
T ss_conf             766999999722777876799999999999999868876056322552565


No 52 
>>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A (A:89-295)
Probab=51.24  E-value=13  Score=15.55  Aligned_cols=13  Identities=31%  Similarity=0.340  Sum_probs=7.1

Q ss_pred             HHHHHHHHHCHHH
Q ss_conf             9999999847788
Q gi|254780834|r  485 AALLLTLINHPAI  497 (648)
Q Consensus       485 ~~LL~llI~~P~l  497 (648)
                      -.+++.++....+
T Consensus        68 Wa~IyY~LR~G~~   80 (207)
T 2qx5_A           68 WALIFYLLRAGLI   80 (207)
T ss_dssp             HHHHHHHHTTTCH
T ss_pred             HHHHHHHHHCCCH
T ss_conf             8999999943889


No 53 
>>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; NS2B-NS3 protease; 2.75A {Murray valley encephalitis virus} (A:1-231)
Probab=51.09  E-value=9.9  Score=16.57  Aligned_cols=17  Identities=24%  Similarity=0.264  Sum_probs=8.1

Q ss_pred             HCCCCHHHHCCCCCCCCCC
Q ss_conf             5068853510124422567
Q gi|254780834|r  146 ERGIDSHAIEMFKLGYAPD  164 (648)
Q Consensus       146 ~Rg~~~~~~~~f~lG~ap~  164 (648)
                      .||+-..  .+.+.||.-+
T Consensus        81 ~~~l~g~--~q~GvG~~~~   97 (231)
T 2wv9_A           81 ARGILGR--YQAGVGVMHE   97 (231)
T ss_dssp             EECSSCE--EEEEEEEEET
T ss_pred             ECCCCCC--CEEEEEEEEC
T ss_conf             3445666--4212799789


No 54 
>>1s1i_9 L37A, YL35, 60S ribosomal protein L43; 80S ribosome, 60S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} (9:)
Probab=51.06  E-value=9.6  Score=16.67  Aligned_cols=26  Identities=27%  Similarity=0.611  Sum_probs=18.3

Q ss_pred             EECCCCCCCCCCEEEECCCCEEEECCCCC
Q ss_conf             53458888587879817897467136888
Q gi|254780834|r   41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHV   69 (648)
Q Consensus        41 ~~cPfh~ektpsf~v~~~~~~~~cf~c~~   69 (648)
                      -.|||..-..=-   -...|+|+|=.||.
T Consensus        36 y~C~fCgk~~vk---R~a~GIW~C~~C~~   61 (91)
T 1s1i_9           36 YDCSFCGKKTVK---RGAAGIWTCSCCKK   61 (91)
T ss_dssp             CCCTTTCSSCCC---EETTTEECCSSSCC
T ss_pred             CCCCCCCCCEEE---EEEEEEEECCCCCC
T ss_conf             239899997348---99888868799998


No 55 
>>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} (A:1-78,A:595-821)
Probab=50.61  E-value=13  Score=15.47  Aligned_cols=70  Identities=21%  Similarity=0.181  Sum_probs=47.5

Q ss_pred             CCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             87089971438899987435542113432136626789885126818996178866225777888888777536973067
Q gi|254780834|r  271 SSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF  350 (648)
Q Consensus       271 ~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~v  350 (648)
                      ++..+|.-|+--|         |..--+|.++|--..-.+.||.                  |         ..|.+|  
T Consensus        37 ~~k~~i~~~~PY~---------ng~lH~GH~~~~~~~D~~aR~~------------------r---------m~G~~v--   78 (305)
T 1ile_A           37 GPRYTVYEGPPTA---------NGLPHVGHAQARSYKDLFPRYK------------------T---------MRGYYA--   78 (305)
T ss_dssp             SCBCCBCCCCCCT---------TSCCCTTHHHHHHHHHHHHHHH------------------H---------HTTCBC--
T ss_pred             CCCEEEECCCCCC---------CCCCHHHHHHHHHHHHHHHHHH------------------H---------CCCCCC--
T ss_conf             9988997289887---------8860342778889999999998------------------7---------389987--


Q ss_pred             EECCCCCCHHHHHHCCCHHHHHHHHHHCC
Q ss_conf             52578888889972036688998864149
Q gi|254780834|r  351 VLLSRGEDPDSFIRCYGKTAFEKLIVESL  379 (648)
Q Consensus       351 v~LP~G~DPDe~ir~~G~eaf~~ll~~A~  379 (648)
                       .+-.+.||++++.++|+|+++-.+-.+.
T Consensus        79 -SkGN~v~p~e~i~~yGaD~lR~~ll~~~  106 (305)
T 1ile_A           79 -SKGNVVDPWDIIRKFGADALRWYIYVSA  106 (305)
T ss_dssp             -TTTCCCCHHHHHTTTCHHHHHHHHHHHS
T ss_pred             -CCCCCCCHHHHHHHCCCHHHHHHHHHHC
T ss_conf             -4788787999987507078889998708


No 56 
>>2ggv_B NS3, non-structural protein 3; beta barrel, serine protease, viral protease, flavivirus, hydrolase; 1.80A {West nile virus} PDB: 2ijo_B (B:)
Probab=50.55  E-value=10  Score=16.44  Aligned_cols=17  Identities=35%  Similarity=0.618  Sum_probs=12.2

Q ss_pred             EEEECCCCEEEEECCCC
Q ss_conf             89707785888501001
Q gi|254780834|r  209 PIRSSRGQVIAFGGRTL  225 (648)
Q Consensus       209 Pi~~~~g~~i~f~gR~l  225 (648)
                      ||.|..|+|||+.|--+
T Consensus       137 PIi~~~G~vVGLYGnGv  153 (185)
T 2ggv_B          137 PIVDKNGDVIGLYGNGV  153 (185)
T ss_dssp             EEECTTSCEEEEEEEEE
T ss_pred             CEECCCCCEEEEECCEE
T ss_conf             74755983999855749


No 57 
>>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual specificity phosphatase, DUSP13, testis and skeletal muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A (A:)
Probab=50.55  E-value=8.2  Score=17.30  Aligned_cols=38  Identities=18%  Similarity=0.315  Sum_probs=18.4

Q ss_pred             EEE-CCCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf             671-36888878-989989885999799999999981885
Q gi|254780834|r   62 YYC-FSCHVKGD-HLSFLSALLGCSFIESVQRLAAIAGVP   99 (648)
Q Consensus        62 ~~c-f~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~gi~   99 (648)
                      -|| -|-|.+|- +.-++|...++++.||++.+..+-.+.
T Consensus       136 VHC~~G~~RS~~i~~ayLm~~~~~~~~~A~~~v~~~R~~~  175 (205)
T 2pq5_A          136 VHCAMGVSRSATLVLAFLMIYENMTLVEAIQTVQAHRNIC  175 (205)
T ss_dssp             EECSSSSSHHHHHHHHHHHHHSCCCHHHHHHHHTTTSCCC
T ss_pred             EEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
T ss_conf             9835666424999999999974989999999999768979


No 58 
>>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} (Z:)
Probab=50.31  E-value=9.6  Score=16.67  Aligned_cols=25  Identities=24%  Similarity=0.662  Sum_probs=18.4

Q ss_pred             EECCCCCCCCCCEEEE-CCCCEEEECCCCC
Q ss_conf             5345888858787981-7897467136888
Q gi|254780834|r   41 ACCPFHDEKTPSFHCN-DSKGFYYCFSCHV   69 (648)
Q Consensus        41 ~~cPfh~ektpsf~v~-~~~~~~~cf~c~~   69 (648)
                      --|||..-.+    |- ...|+|+|=.||.
T Consensus        61 y~CpfCgk~~----vkR~a~GIW~C~~C~~   86 (116)
T 3cc2_Z           61 HACPNCGEDR----VDRQGTGIWQCSYCDY   86 (116)
T ss_dssp             EECSSSCCEE----EEEEETTEEEETTTCC
T ss_pred             CCCCCCCCCE----EEEEEEEEEECCCCCC
T ss_conf             4188889970----4778888878588899


No 59 
>>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 1mkp_A (A:)
Probab=50.03  E-value=11  Score=16.14  Aligned_cols=40  Identities=8%  Similarity=0.051  Sum_probs=28.8

Q ss_pred             EEEEC-CCCCCCCH-HHHHHHHCCCCHHHHHHHHHHHH-CCCC
Q ss_conf             46713-68888789-89989885999799999999981-8858
Q gi|254780834|r   61 FYYCF-SCHVKGDH-LSFLSALLGCSFIESVQRLAAIA-GVPL  100 (648)
Q Consensus        61 ~~~cf-~c~~~gd~-~~f~~~~~~~~f~ea~~~la~~~-gi~~  100 (648)
                      .-||- |-|.+|-+ .-++|...+++|.+|++.+..+- ++.+
T Consensus        89 lVHC~~G~~RS~~~v~ayL~~~~~~~~~~A~~~v~~~R~~~~~  131 (155)
T 2hxp_A           89 LVHSLAGVSRSVTVTVAYLMQKLHLSLNDAYDLVKRKKSNISP  131 (155)
T ss_dssp             EEECSSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHHHCSCCCC
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
T ss_conf             9986677881799999999998399799999999998898899


No 60 
>>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, microfluidic labcard, PSI-2; 1.70A {Burkholderia pseudomallei STRAIN1710B} PDB: 3cez_A (A:)
Probab=49.52  E-value=12  Score=15.84  Aligned_cols=14  Identities=7%  Similarity=0.017  Sum_probs=7.4

Q ss_pred             CCCCHHHHCCCCCC
Q ss_conf             06885351012442
Q gi|254780834|r  147 RGIDSHAIEMFKLG  160 (648)
Q Consensus       147 Rg~~~~~~~~f~lG  160 (648)
                      |-++.+....+.-|
T Consensus        59 ~pftg~y~~~~~~G   72 (164)
T 3cxk_A           59 PPFTGEYTDTEDAG   72 (164)
T ss_dssp             CTTCSTTTTCCCSE
T ss_pred             CCCCCCCCCCCCCC
T ss_conf             99977675788985


No 61 
>>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} (A:351-477)
Probab=49.38  E-value=14  Score=15.32  Aligned_cols=18  Identities=11%  Similarity=-0.036  Sum_probs=6.9

Q ss_pred             CHHHHHHCCCHHHHHHHH
Q ss_conf             888997203668899886
Q gi|254780834|r  358 DPDSFIRCYGKTAFEKLI  375 (648)
Q Consensus       358 DPDe~ir~~G~eaf~~ll  375 (648)
                      |||..+|......+..+.
T Consensus        24 d~~~~vr~~a~~~l~~l~   41 (127)
T 1b3u_A           24 DECPEVRLNIISNLDCVN   41 (127)
T ss_dssp             CSCHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHCC
T ss_conf             001013478887633200


No 62 
>>3e90_B NS3 protease; trypsin-like serine protease, protease inhibitor, catalytic histidine, induced FIT, ATP-binding, capsid protein, helicase; HET: NKK; 2.45A {West nile virus} (B:)
Probab=49.26  E-value=11  Score=16.32  Aligned_cols=17  Identities=35%  Similarity=0.618  Sum_probs=13.4

Q ss_pred             EEEECCCCEEEEECCCC
Q ss_conf             89707785888501001
Q gi|254780834|r  209 PIRSSRGQVIAFGGRTL  225 (648)
Q Consensus       209 Pi~~~~g~~i~f~gR~l  225 (648)
                      ||.|..|+|||+.|--+
T Consensus       142 PIi~~~G~vVGLYGnGv  158 (198)
T 3e90_B          142 PIVDKNGDVIGLYGNGV  158 (198)
T ss_dssp             EEECTTCCEEEECCCEE
T ss_pred             CEECCCCCEEEEECCEE
T ss_conf             64745896999853668


No 63 
>>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} (A:)
Probab=48.36  E-value=10  Score=16.37  Aligned_cols=82  Identities=10%  Similarity=-0.017  Sum_probs=43.4

Q ss_pred             CEEEEECCCC-CCHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             3067525788-888899720366889988641499279999999853023314579999999998854179989999999
Q gi|254780834|r  347 RVNFVLLSRG-EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS  425 (648)
Q Consensus       347 ~v~vv~LP~G-~DPDe~ir~~G~eaf~~ll~~A~~l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~yl  425 (648)
                      ..++...|.= -|-||.--.||..       -+.---|-+|-....+.+ ..-..+.-...++.+.+..|+|+.+|+...
T Consensus       342 ~A~~~s~P~LeI~~dDV~~sHgAt-------vG~id~e~LFYL~SRGi~-~~~A~~Llv~gF~~~vl~~i~~e~lr~~i~  413 (435)
T 1vh4_A          342 LAEVDTKPQLEIYADDVKCSHGAT-------VGRIDDEQIFYLRSRGIN-QQDAQQMIIYAFAAELTEALRDEGLKQQVL  413 (435)
T ss_dssp             TCEEEEEEEEEECCSSEEEEEEEE-------EECCCHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             CCEEEECCEEEEECCCEEEEEEEE-------CCCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             841665623899639726994021-------467898999999876999-999999999998999998698599999999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999988765
Q gi|254780834|r  426 QAIRDRLQQLF  436 (648)
Q Consensus       426 ~~la~~L~~~~  436 (648)
                      +.+.++|....
T Consensus       414 ~~i~~~l~~~~  424 (435)
T 1vh4_A          414 ARIGQRLPGGA  424 (435)
T ss_dssp             HHHHTTSTTC-
T ss_pred             HHHHHHHHCCC
T ss_conf             99998611422


No 64 
>>2waq_N DNA-directed RNA polymerase RPO10 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_N 2pmz_N 3hkz_N (N:)
Probab=48.01  E-value=14  Score=15.16  Aligned_cols=31  Identities=23%  Similarity=0.488  Sum_probs=18.8

Q ss_pred             EECCCCC-CCCHH-HHHHHH-CCCCHHHHHHHHH
Q ss_conf             7136888-87898-998988-5999799999999
Q gi|254780834|r   63 YCFSCHV-KGDHL-SFLSAL-LGCSFIESVQRLA   93 (648)
Q Consensus        63 ~cf~c~~-~gd~~-~f~~~~-~~~~f~ea~~~la   93 (648)
                      .||+||+ =||.+ .|+... +|.+-.+|+-.|.
T Consensus         6 RCFTCGkvig~~we~y~~~~~~g~~~~~aLD~Lg   39 (66)
T 2waq_N            6 RCFTCGSLIADKWQPFITRVNAGENPGKVLDDLG   39 (66)
T ss_dssp             SCTTTCCCCGGGHHHHHHHHTTTCCHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf             6577860479989999999876999899999869


No 65 
>>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (Z:)
Probab=47.99  E-value=11  Score=16.14  Aligned_cols=25  Identities=24%  Similarity=0.662  Sum_probs=18.5

Q ss_pred             EECCCCCCCCCCEEEE-CCCCEEEECCCCC
Q ss_conf             5345888858787981-7897467136888
Q gi|254780834|r   41 ACCPFHDEKTPSFHCN-DSKGFYYCFSCHV   69 (648)
Q Consensus        41 ~~cPfh~ektpsf~v~-~~~~~~~cf~c~~   69 (648)
                      -.|||..-.+    |- ...|+|+|=+||.
T Consensus        28 y~C~fCgk~~----vkR~~~GIW~C~~C~~   53 (83)
T 1vq8_Z           28 HACPNCGEDR----VDRQGTGIWQCSYCDY   53 (83)
T ss_dssp             EECSSSCCEE----EEEEETTEEEETTTCC
T ss_pred             CCCCCCCCCC----EEEEEEEEEECCCCCC
T ss_conf             5198989971----2888888878899999


No 66 
>>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} PDB: 1vhr_A* 1j4x_A* (A:)
Probab=46.99  E-value=15  Score=15.04  Aligned_cols=61  Identities=5%  Similarity=0.022  Sum_probs=37.0

Q ss_pred             EEECCCCCCCCCCE--------------EEECCCC-EEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf             75345888858787--------------9817897-46713-6888878-9899898859997999999999818858
Q gi|254780834|r   40 WACCPFHDEKTPSF--------------HCNDSKG-FYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIAGVPL  100 (648)
Q Consensus        40 ~~~cPfh~ektpsf--------------~v~~~~~-~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~gi~~  100 (648)
                      .-.+|+.+..+|..              .-...+. .-||- |=|.+|- ++-++|...++++.+|+..+..+-.+.+
T Consensus        83 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vlVHC~~G~~RS~~vv~aylm~~~~~~~~~A~~~v~~~r~~~~  160 (183)
T 3f81_A           83 YLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNREIGP  160 (183)
T ss_dssp             EEECCCCCSTTSCGGGGHHHHHHHHHHHHHSTTCCEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCCCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
T ss_conf             997316877148799999999999877530477239998077777409999999998309899999999996798998


No 67 
>>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Porphyromonas gingivalis W83} (A:205-263)
Probab=46.51  E-value=15  Score=14.98  Aligned_cols=53  Identities=21%  Similarity=0.181  Sum_probs=33.4

Q ss_pred             CHHHHHHHHHCCC--EEEEEECCCCCCH-HHHHHHHHHHHHHH--HCCCCEEEEECCC
Q ss_conf             6267898851268--1899617886622-57778888887775--3697306752578
Q gi|254780834|r  303 TEYQLRLLWKLSP--RIVLCFDGDDPGL-RAAYKAIDLVLCHL--IPGNRVNFVLLSR  355 (648)
Q Consensus       303 t~~~~~~l~r~~~--~vvl~fDgD~AG~-kAa~Ra~e~~l~~l--~~g~~v~vv~LP~  355 (648)
                      |..||-.|-||+.  .|+++...|..-- -+.++...-.|.-.  ..|..++++.||.
T Consensus         1 TDGHID~larFv~p~~vl~~~~~d~~d~~y~~~~~~~~~L~~~tda~Gr~~~i~~lP~   58 (59)
T 1zbr_A            1 TDGHIDTLARFVDTRTIVYVRSEDPSDEHYSDLTAXEQELKELRRPDGQPYRLVPLPX   58 (59)
T ss_dssp             SSSCGGGSEEEEETTEEEEEECCCTTSTTHHHHHHHHHHHHHCBCTTSCBCEEEEEEC
T ss_pred             CCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf             6665123589807995688624787651567999999999986431487434798247


No 68 
>>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A* (A:39-82,A:130-154)
Probab=46.36  E-value=7.4  Score=17.73  Aligned_cols=14  Identities=36%  Similarity=0.795  Sum_probs=11.1

Q ss_pred             ECCCCEEEECCCCC
Q ss_conf             17897467136888
Q gi|254780834|r   56 NDSKGFYYCFSCHV   69 (648)
Q Consensus        56 ~~~~~~~~cf~c~~   69 (648)
                      +.++|+|+|-+||.
T Consensus         7 ~~e~GvY~C~~Cg~   20 (69)
T 3hcj_A            7 NKLDGVYTCRLCGL   20 (69)
T ss_dssp             SCSSEEEEETTTCC
T ss_pred             CCCCCEEEECCCCC
T ss_conf             87773785078996


No 69 
>>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase, zinc; NMR {Methanothermobacterthermautotrophicus str} (A:28-79,A:141-151)
Probab=45.32  E-value=8.6  Score=17.12  Aligned_cols=14  Identities=29%  Similarity=0.826  Sum_probs=11.7

Q ss_pred             ECCCCEEEECCCCC
Q ss_conf             17897467136888
Q gi|254780834|r   56 NDSKGFYYCFSCHV   69 (648)
Q Consensus        56 ~~~~~~~~cf~c~~   69 (648)
                      +.++|+|+|=+||.
T Consensus        29 ~~e~G~Y~C~~Cg~   42 (63)
T 2k8d_A           29 LHDDGIYRCICCGT   42 (63)
T ss_dssp             CCSCSEEEETTTTE
T ss_pred             CCCCCEEECCCCCC
T ss_conf             87788897228998


No 70 
>>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} (A:119-491)
Probab=44.93  E-value=15  Score=14.79  Aligned_cols=14  Identities=14%  Similarity=0.335  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999988
Q gi|254780834|r  619 SILHEVHIQIHQIE  632 (648)
Q Consensus       619 ~el~elk~~L~~l~  632 (648)
                      +...++..+++.++
T Consensus        32 ~~~~~~~~~~~~~~   45 (373)
T 1m1j_A           32 RLEVDIDIKIRACK   45 (373)
T ss_dssp             HHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 71 
>>2zkr_z 60S ribosomal protein L37A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1ysh_D (z:1-71)
Probab=44.83  E-value=16  Score=14.78  Aligned_cols=25  Identities=24%  Similarity=0.525  Sum_probs=18.2

Q ss_pred             ECCCCCCCCCCEEEECCCCEEEECCCCC
Q ss_conf             3458888587879817897467136888
Q gi|254780834|r   42 CCPFHDEKTPSFHCNDSKGFYYCFSCHV   69 (648)
Q Consensus        42 ~cPfh~ektpsf~v~~~~~~~~cf~c~~   69 (648)
                      .|||..-.+-   --...|+|+|=.||.
T Consensus        38 ~CpfCgk~~v---kR~a~GIW~C~~C~~   62 (71)
T 2zkr_z           38 TCSFCGKTKM---KRRAVGIWHCGSCMK   62 (71)
T ss_dssp             CCSSSCSSCE---EEEETTEEEETTTCC
T ss_pred             CCCCCCCCEE---EEEEEEEEECCCCCC
T ss_conf             1999999746---888888868889999


No 72 
>>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral protein/protease complex; 1.50A {Dengue virus 2} (B:)
Probab=44.60  E-value=13  Score=15.47  Aligned_cols=16  Identities=31%  Similarity=0.663  Sum_probs=7.6

Q ss_pred             EEEECCCCEEEEECCC
Q ss_conf             8970778588850100
Q gi|254780834|r  209 PIRSSRGQVIAFGGRT  224 (648)
Q Consensus       209 Pi~~~~g~~i~f~gR~  224 (648)
                      ||.|..|+|||+.|--
T Consensus       138 PIin~~G~vVGlygnG  153 (185)
T 2fom_B          138 PIVDKKGKVVGLYGNG  153 (185)
T ss_dssp             EEECTTSCEEEETTCE
T ss_pred             CEECCCCCEEEEECCE
T ss_conf             6575899799985455


No 73 
>>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} (A:272-364)
Probab=43.86  E-value=6.4  Score=18.31  Aligned_cols=21  Identities=24%  Similarity=0.602  Sum_probs=16.5

Q ss_pred             ECCCCCCCCCCEEEECCCCEEEECC
Q ss_conf             3458888587879817897467136
Q gi|254780834|r   42 CCPFHDEKTPSFHCNDSKGFYYCFS   66 (648)
Q Consensus        42 ~cPfh~ektpsf~v~~~~~~~~cf~   66 (648)
                      -|||||-.|    |-|++=-|--|.
T Consensus         3 ~aPfHNGtt----v~peRI~WL~fv   23 (93)
T 3ljn_A            3 ACPYHNGTT----VLPDRVVWLDFV   23 (93)
T ss_dssp             TCTTBSSSS----BCGGGCCCCTTS
T ss_pred             CCCCCCCCC----CCHHHHCCCCHH
T ss_conf             376656775----542320334489


No 74 
>>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} (A:221-376)
Probab=43.42  E-value=11  Score=16.16  Aligned_cols=58  Identities=17%  Similarity=0.206  Sum_probs=33.4

Q ss_pred             CCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCC
Q ss_conf             35210110817888864331000023567870899714388999874355421134321366267898851268
Q gi|254780834|r  242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP  315 (648)
Q Consensus       242 f~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~  315 (648)
                      +.|+..+.|++.+|..||..               -|+.+|-|.+ -..|+++-|..-|+.|..|-..|-|++-
T Consensus        50 ~~~eEa~~~FYmlRNLIRRN---------------D~~l~DdiRf-LLsIPsvkaLAh~ait~~~~NELlRLAl  107 (156)
T 2aja_A           50 VTKSECLQGFYXLRNLIRRN---------------DEVLLDDIRF-LLSIPGIKALAPTATIPGDANELLRLAL  107 (156)
T ss_dssp             SSHHHHHHHHHHHHHHHHHC---------------CGGGHHHHHH-HHTSTTTGGGSSCCSSTTCCCHHHHHHH
T ss_pred             HHCCCCCCCCCCHHHHHHHC---------------CCCHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             84654213776316999850---------------5786999999-9864677549999988999988999999


No 75 
>>3iar_A Adenosine deaminase; purine metabolism, structural genomics, structural genomics consortium, SGC, acetylation, disease mutation; HET: 3D1; 1.52A {Homo sapiens} PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 1a4m_A* 1a4l_A* ... (A:1-60,A:240-367)
Probab=42.89  E-value=11  Score=16.25  Aligned_cols=66  Identities=17%  Similarity=0.127  Sum_probs=34.9

Q ss_pred             HHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHH
Q ss_conf             885999799999999981885877682036777889999999999999999973267775789999850688535
Q gi|254780834|r   79 ALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHA  153 (648)
Q Consensus        79 ~~~~~~f~ea~~~la~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~  153 (648)
                      +.+|-=-+|.+..||.+.||++|..+...-..      .+... .... +...|. -..+...+++.++|+.-+.
T Consensus        14 HldGs~~~~t~~~la~~~~~~lp~~~~~~~~~------~~~~~-~~~~-l~~~l~-~~d~~~~~~l~e~~i~ie~   79 (188)
T 3iar_A           14 HLDGSIKPETILYYGRRRGIALPANTAEGLLN------VIGMD-KPLT-LPDFLA-LEDQALYNRLRQENMHFEI   79 (188)
T ss_dssp             BGGGSCCHHHHHHHHHHHTCCCSCSSHHHHHH------HHCCS-SCCC-HHHHHG-GGCHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHH------HHCCC-CCCC-HHHHHH-CCCHHHHHHHHHHCCCEEE
T ss_conf             88478899999999998399999899999998------84455-7788-999999-6699999999984997898


No 76 
>>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} (A:25-107)
Probab=41.97  E-value=17  Score=14.43  Aligned_cols=52  Identities=17%  Similarity=0.272  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99858999999999999998724127989999999999999999999884132676
Q gi|254780834|r  584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE  639 (648)
Q Consensus       584 l~~r~~~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~~~Eal~e  639 (648)
                      +......+..+.+.+.++|.++    ..+....+..+..+++.++..++....-++
T Consensus        16 l~~~~~~l~~~rn~~sk~I~~~----~~~~~~~l~~e~~~lk~~i~~le~~~~~~~   67 (83)
T 1ses_A           16 LKKRLQEVQTERNQVAKRVPKA----PPEEKEALIARGKALGEEAKRLEEALREKE   67 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999997532----515489999999999999999886799998


No 77 
>>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} (A:1-117)
Probab=41.40  E-value=15  Score=15.02  Aligned_cols=66  Identities=6%  Similarity=-0.021  Sum_probs=26.7

Q ss_pred             CCHHHHHHCCCHHHHHHHHHHCC-CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             88889972036688998864149-9279999999853023314579999999998854179989999
Q gi|254780834|r  357 EDPDSFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY  422 (648)
Q Consensus       357 ~DPDe~ir~~G~eaf~~ll~~A~-~l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~  422 (648)
                      .|||..+|......+..+...-. ....-.+..+.....-++++-|..+...+..++..++......
T Consensus        20 ~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~   86 (117)
T 1b3u_A           20 RNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVH   86 (117)
T ss_dssp             TCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             5999999999999999999984917449999999999865747999999999999998728756899


No 78 
>>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} (A:)
Probab=40.99  E-value=17  Score=14.32  Aligned_cols=30  Identities=27%  Similarity=0.569  Sum_probs=20.4

Q ss_pred             ECCCCC-CCCCCEEEECC--CCEEEECCCCCCC
Q ss_conf             345888-85878798178--9746713688887
Q gi|254780834|r   42 CCPFHD-EKTPSFHCNDS--KGFYYCFSCHVKG   71 (648)
Q Consensus        42 ~cPfh~-ektpsf~v~~~--~~~~~cf~c~~~g   71 (648)
                      -|||.+ |++=+..+.-.  .+.-+|-.||..-
T Consensus        25 ~CPfCnh~~sV~vkidk~~~~g~i~C~vCg~~~   57 (85)
T 1wii_A           25 TCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF   57 (85)
T ss_dssp             CCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred             CCCCCCCCCEEEEEEEECCCEEEEEEEECCCEE
T ss_conf             399788987599999922798999985078837


No 79 
>>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens} (A:)
Probab=40.73  E-value=18  Score=14.28  Aligned_cols=35  Identities=11%  Similarity=0.179  Sum_probs=17.0

Q ss_pred             EEEC-CCCCCCCH-HHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             6713-68888789-89989885999799999999981
Q gi|254780834|r   62 YYCF-SCHVKGDH-LSFLSALLGCSFIESVQRLAAIA   96 (648)
Q Consensus        62 ~~cf-~c~~~gd~-~~f~~~~~~~~f~ea~~~la~~~   96 (648)
                      -||- |.|.+|-+ .-++|...++++.+|+..+..+-
T Consensus       102 VHC~~G~~RS~~iv~ayLm~~~~~~~~~A~~~v~~~R  138 (188)
T 2esb_A          102 LHCAAGVSRSAALCLAYLMKYHAMSLLDAHTWTKSCR  138 (188)
T ss_dssp             EECSSSSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHC
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             9813544438999999999971999999999999979


No 80 
>>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica} (A:)
Probab=40.61  E-value=18  Score=14.27  Aligned_cols=60  Identities=13%  Similarity=0.162  Sum_probs=39.6

Q ss_pred             CEEEECCCCCCCCCCEEE------------ECCCCE-EEECC-CCCCCCH-HHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             557534588885878798------------178974-67136-8888789-899898859997999999999818
Q gi|254780834|r   38 DYWACCPFHDEKTPSFHC------------NDSKGF-YYCFS-CHVKGDH-LSFLSALLGCSFIESVQRLAAIAG   97 (648)
Q Consensus        38 ~~~~~cPfh~ektpsf~v------------~~~~~~-~~cf~-c~~~gd~-~~f~~~~~~~~f~ea~~~la~~~g   97 (648)
                      .|.-++|+-+...|....            ...+.. -||.. -|.+|-+ .-++|...++++.||++.+..+-.
T Consensus        55 ~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~Rp  129 (161)
T 3emu_A           55 DILRLDIVSEEGHQLYDSIPNAIKFIIRSIQRKEGVLIISGTGVNKAPAIVIAFLMYYQRLSFINAFNKVQGLYP  129 (161)
T ss_dssp             EEEEECCCCSSTTHHHHHHHHHHHHHHHHHHTTCEEEEEESSSSSHHHHHHHHHHHHHTTCCHHHHHHHHHHHCT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf             899996478872689999999999754441168537998412242149999999998429999999999999899


No 81 
>>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens} (A:)
Probab=40.28  E-value=18  Score=14.23  Aligned_cols=40  Identities=5%  Similarity=0.088  Sum_probs=26.8

Q ss_pred             EEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHH-CCCC
Q ss_conf             46713-6888878-989989885999799999999981-8858
Q gi|254780834|r   61 FYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIA-GVPL  100 (648)
Q Consensus        61 ~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~-gi~~  100 (648)
                      +-||- |=|.+|- |.-|+|..+++++.+|++++..+- ++.+
T Consensus        91 lVHC~~G~~RS~~~v~ayLm~~~~~~~~~A~~~v~~~R~~~~~  133 (177)
T 2oud_A           91 LIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPIISP  133 (177)
T ss_dssp             EEECSSSSSHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
T ss_conf             9984755560699999999998298999999999998996799


No 82 
>>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori J99} PDB: 2cmu_A (A:199-265)
Probab=40.21  E-value=18  Score=14.22  Aligned_cols=53  Identities=17%  Similarity=0.109  Sum_probs=32.1

Q ss_pred             CHHHHHHHHHCCC--EEEEEECCCCCCH-HHHHHHHHHHHHHH--HCCCCEEEEECCC
Q ss_conf             6267898851268--1899617886622-57778888887775--3697306752578
Q gi|254780834|r  303 TEYQLRLLWKLSP--RIVLCFDGDDPGL-RAAYKAIDLVLCHL--IPGNRVNFVLLSR  355 (648)
Q Consensus       303 t~~~~~~l~r~~~--~vvl~fDgD~AG~-kAa~Ra~e~~l~~l--~~g~~v~vv~LP~  355 (648)
                      |..||-.|-||+.  .|+++...|..-- -+..++..-.|.-.  ..|..++|+.||.
T Consensus         1 TDGHID~lArFv~p~~vl~~~~~d~~dp~~~~~~~~~~~L~~~tda~G~~~~ii~lP~   58 (67)
T 3hvm_A            1 TDSHTDTLARFLDKDTIVYSACEDKNDEHYTALKKMQEELKTFKKLDKTPYKLIPLEI   58 (67)
T ss_dssp             SSCCGGGTEEEEETTEEEEEECCCTTSTTHHHHHHHHHHHHHCBCTTSCBCEEEEEEC
T ss_pred             CCCCCCCCEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf             5677402104447983999971477631489999999999985532115775057628


No 83 
>>3e7h_A DNA-directed RNA polymerase subunit beta; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 1.70A {Vibrio cholerae} (A:7-87)
Probab=40.17  E-value=4.8  Score=19.48  Aligned_cols=53  Identities=23%  Similarity=0.461  Sum_probs=37.4

Q ss_pred             CCCCC-EEEEEEEECCCCEEEEECCCCCCCC-------CCEECCCCCCCCCCCCHHCCCHHHHHHHHHH
Q ss_conf             00167-1688897077858885010014655-------3001038767653521011081788886433
Q gi|254780834|r  200 DRFRN-RLIFPIRSSRGQVIAFGGRTLSKGE-------SVKYLNSPETILFHKGKNLYNFFGALNYLQK  260 (648)
Q Consensus       200 d~Fr~-Ri~fPi~~~~g~~i~f~gR~l~~~~-------~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~  260 (648)
                      |||+| |+.|+|.| .|.||.=.||.++...       +-|++.=|       ...|+|-+.|.+-+..
T Consensus        12 e~~~G~~~~~DIvd-tGeviv~~g~kIT~~~~kkl~~aGi~~i~v~-------~e~l~gk~la~divd~   72 (81)
T 3e7h_A           12 ERLRGETATFDIEA-DGKVYVEKGRRVTARHIRQLEKDGVNFIEVP-------VEYIVGKVSAKDYVNE   72 (81)
T ss_dssp             HHHTTCBCSSCEEE-TTEEEECTTCBCCHHHHHHHHHTTCCEEEEC-------GGGGGTCSCCCTTBCT
T ss_pred             HHHCCCCCCCCCCC-CCEEEEECCCEECHHHHHHHHHCCCCEEECC-------HHHHCCEEEHHHEECC
T ss_conf             99678764523035-9909993797638999999864768559817-------7893354503002768


No 84 
>>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} (A:)
Probab=39.74  E-value=11  Score=16.15  Aligned_cols=16  Identities=19%  Similarity=0.663  Sum_probs=11.8

Q ss_pred             CCCEEEECCCCCCCCH
Q ss_conf             8974671368888789
Q gi|254780834|r   58 SKGFYYCFSCHVKGDH   73 (648)
Q Consensus        58 ~~~~~~cf~c~~~gd~   73 (648)
                      .+..-+||-||+-|-+
T Consensus         3 ~rk~vkCfNCGK~GH~   18 (29)
T 1nc8_A            3 QRKVIRCWNCGKEGHS   18 (29)
T ss_dssp             CCCCCBCTTTSCBSSC
T ss_pred             CCCEEEEECCCCCCHH
T ss_conf             6545677527874320


No 85 
>>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} (A:1-109,A:335-413)
Probab=39.69  E-value=18  Score=14.28  Aligned_cols=11  Identities=55%  Similarity=0.806  Sum_probs=6.0

Q ss_pred             EECCCCEEEEE
Q ss_conf             70778588850
Q gi|254780834|r  211 RSSRGQVIAFG  221 (648)
Q Consensus       211 ~~~~g~~i~f~  221 (648)
                      ....|++-+||
T Consensus        74 ~~~~g~~y~~G   84 (188)
T 1a12_A           74 LSKSGQVYSFG   84 (188)
T ss_dssp             EETTSCEEEEE
T ss_pred             EECCCEEEEEE
T ss_conf             96699899994


No 86 
>>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens} (A:)
Probab=39.66  E-value=18  Score=14.15  Aligned_cols=37  Identities=3%  Similarity=0.038  Sum_probs=28.8

Q ss_pred             EEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             46713-6888878-9899898859997999999999818
Q gi|254780834|r   61 FYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIAG   97 (648)
Q Consensus        61 ~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~g   97 (648)
                      +-||- |.|.+|- +..++|...++++.+|++.+..+-.
T Consensus        94 lVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp  132 (154)
T 2r0b_A           94 LVHGNAGISRSAAFVIAYIMETFGMKYRDAFAYVQERRF  132 (154)
T ss_dssp             EEECSSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHHHST
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf             998320013489999999998639899999999999899


No 87 
>>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} (A:154-313)
Probab=39.63  E-value=17  Score=14.35  Aligned_cols=15  Identities=13%  Similarity=0.120  Sum_probs=7.9

Q ss_pred             CCCCHHHHCCCCCCC
Q ss_conf             068853510124422
Q gi|254780834|r  147 RGIDSHAIEMFKLGY  161 (648)
Q Consensus       147 Rg~~~~~~~~f~lG~  161 (648)
                      |-++.+-...+.-|.
T Consensus        42 ~pftg~y~~~~~~Gi   56 (160)
T 3e0m_A           42 APFTNAYDQTFEEGI   56 (160)
T ss_dssp             CSSSSTTTTCCCSEE
T ss_pred             CCCCCCCCCCCCCEE
T ss_conf             986788766689869


No 88 
>>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A (A:1-113)
Probab=39.58  E-value=18  Score=14.14  Aligned_cols=61  Identities=18%  Similarity=0.226  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999858999999999999998724127989999999999999999999884132
Q gi|254780834|r  574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA  636 (648)
Q Consensus       574 ~~e~~~~~l~l~~r~~~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~~~Ea  636 (648)
                      +.....+.-.+......+..+.+.+.++|.+....++.  ..++..+..+++.++..++....
T Consensus        33 i~~l~~~~r~~~~~~~~l~~~rn~lsk~i~~~~~~~~e--~~~l~~e~~~lk~~l~~le~~~~   93 (113)
T 2dq0_A           33 ILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEP--VDELLAKSREIVKRIGELENEVE   93 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC--THHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999867997--89999999999999999999999


No 89 
>>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens} (A:)
Probab=38.71  E-value=19  Score=14.04  Aligned_cols=44  Identities=5%  Similarity=0.146  Sum_probs=30.0

Q ss_pred             CCCCE-EEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf             78974-6713-6888878-9899898859997999999999818858
Q gi|254780834|r   57 DSKGF-YYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIAGVPL  100 (648)
Q Consensus        57 ~~~~~-~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~gi~~  100 (648)
                      ..+.+ -||- |=+.+|- ++-++|...++++.+|+..+..+-..-.
T Consensus        82 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~v~~~Rp~~~  128 (165)
T 1wrm_A           82 RGESCLVHCLAGVSRSVTLVIAYIMTVTDFGWEDALHTVRAGRSCAN  128 (165)
T ss_dssp             TTCEEEEECSSSSSHHHHHHHHHHHHTSSCCHHHHHHHHHHHCTTCC
T ss_pred             CCCCEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf             34305788334466259999999999808789999999999799789


No 90 
>>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis mr-1} (A:146-325)
Probab=38.45  E-value=19  Score=14.01  Aligned_cols=52  Identities=23%  Similarity=0.298  Sum_probs=34.5

Q ss_pred             CHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHH-HHHHCCC--EEEEEE
Q ss_conf             1011081788886433100002356787089971438899987435542113432136626789-8851268--189961
Q gi|254780834|r  245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR-LLWKLSP--RIVLCF  321 (648)
Q Consensus       245 ~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~-~l~r~~~--~vvl~f  321 (648)
                      ++.+||.......+..                         +.....+.++||+ |+||-..|. .+.++.+  +|++|=
T Consensus        99 grE~F~~~~~~~~l~~-------------------------~~~ls~~D~~aTl-t~~TA~sI~~~~~~~~~~~~v~v~G  152 (180)
T 3cqy_A           99 GRELFNQAWLEQQLSA-------------------------FNQLNEEDIQSTL-LDLTCHSIAQDILKLAQEGELFVCG  152 (180)
T ss_dssp             CSSSSSHHHHHHHTTT-------------------------CTTSCHHHHHHHH-HHHHHHHHHHHHHHHCSSEEEEEES
T ss_pred             HHHHHHHHHHHHHHHC-------------------------CCCCCCHHHHHHH-HHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf             4555445432443201-------------------------2457820255678-8899999875555413567238966


Q ss_pred             C
Q ss_conf             7
Q gi|254780834|r  322 D  322 (648)
Q Consensus       322 D  322 (648)
                      =
T Consensus       153 G  153 (180)
T 3cqy_A          153 G  153 (180)
T ss_dssp             G
T ss_pred             C
T ss_conf             8


No 91 
>>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii} (A:)
Probab=37.90  E-value=17  Score=14.51  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=17.6

Q ss_pred             HHHCCCCCCC---CCCCCCHHHHHHHCCCCCHHHHHH
Q ss_conf             3510124422---567741034554205997345232
Q gi|254780834|r  152 HAIEMFKLGY---APDSRYSLREHLRQKGFSEEKIIE  185 (648)
Q Consensus       152 ~~~~~f~lG~---ap~~~~~l~~~l~~~~~~~~~~~~  185 (648)
                      ++-.+|+|+|   +-.++..|-..+..+|++.+.+++
T Consensus        23 ~vF~~~gi~~~~c~~~~~~tL~~aa~~~gid~~~ll~   59 (73)
T 2k5e_A           23 GVLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDILR   59 (73)
T ss_dssp             HHHHHTTGGGGGTTTGGGSBHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             9999859999798776668299999993989999999


No 92 
>>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} (A:)
Probab=37.76  E-value=19  Score=13.92  Aligned_cols=39  Identities=10%  Similarity=0.107  Sum_probs=31.5

Q ss_pred             HCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             126818996178866225777888888777536973067525
Q gi|254780834|r  312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL  353 (648)
Q Consensus       312 r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~L  353 (648)
                      +..++|+++.|+.++..+|...+++++..   .|-++.++..
T Consensus         2 ~m~k~Ilv~vD~s~~s~~al~~a~~~a~~---~~~~i~~~hv   40 (138)
T 1q77_A            2 NAXKVLLVLTDAYSDCEKAITYAVNFSEK---LGAELDILAV   40 (138)
T ss_dssp             CCCEEEEEEESTTCCCHHHHHHHHHHHTT---TCCEEEEEEE
T ss_pred             CCCCEEEEEEECCHHHHHHHHHHHHHHHH---CCCEEEEEEE
T ss_conf             86789999983999999999999998876---2956999995


No 93 
>>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} (A:1-65)
Probab=37.50  E-value=19  Score=13.89  Aligned_cols=29  Identities=10%  Similarity=0.212  Sum_probs=18.3

Q ss_pred             EEECCCCCCCCCCEEEECCCCEEEECCCCCC
Q ss_conf             7534588885878798178974671368888
Q gi|254780834|r   40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVK   70 (648)
Q Consensus        40 ~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~   70 (648)
                      --.||=..-+. -.+|+.+.-.| ||+|+..
T Consensus        14 H~pCpnCGSSD-a~s~YsDGh~~-CF~C~~~   42 (65)
T 1nui_A           14 HIPCDNCGSSD-GNSLFSDGHTF-CYVCEKW   42 (65)
T ss_dssp             EECCSSSCCSS-CEEEETTSCEE-ETTTCCE
T ss_pred             CCCCCCCCCCC-CCEEECCCCEE-ECCCCCC
T ss_conf             58999897999-98795399889-7889985


No 94 
>>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* (A:1-103)
Probab=37.48  E-value=15  Score=14.83  Aligned_cols=16  Identities=19%  Similarity=0.468  Sum_probs=9.5

Q ss_pred             HHHHCCCCCCHHHHHC
Q ss_conf             9874355421134321
Q gi|254780834|r  285 SLCQAGVQNVVSSLGT  300 (648)
Q Consensus       285 ~l~~~G~~n~va~~Gt  300 (648)
                      .|++.|++.||||+=|
T Consensus        68 ~L~d~Gl~~VvAPl~t   83 (103)
T 3i1a_A           68 LLHDSGIKEIIFPIHT   83 (103)
T ss_dssp             HHHHTTCCSSCCCCCC
T ss_pred             HHHHCCCCCCCCEEEC
T ss_conf             9996499888824762


No 95 
>>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5} (A:1-112)
Probab=37.35  E-value=19  Score=13.87  Aligned_cols=51  Identities=20%  Similarity=0.412  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85899999999999999872412798999999999999999999988413267
Q gi|254780834|r  586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI  638 (648)
Q Consensus       586 ~r~~~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~~~Eal~  638 (648)
                      .....+..+.+.+.+++.+....++.  ...+..+..+++.++..++.+...+
T Consensus        44 ~~~~~l~~~~n~~sk~i~~~k~~~~e--~~~l~~e~~~lk~~l~~le~~~~~~   94 (112)
T 2dq3_A           44 KRLEALRSERNKLSKEIGKLKREGKD--TTEIQNRVKELKEEIDRLEEELRKV   94 (112)
T ss_dssp             HHHHHHHHHHHHHHHHTTGGGSSCSC--TTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999998767888--9999999999999999889999999


No 96 
>>1z0j_B FYVE-finger-containing RAB5 effector protein rabenosyn-5, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} (B:)
Probab=37.34  E-value=19  Score=13.87  Aligned_cols=45  Identities=20%  Similarity=0.299  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999998724127989999999999999999999884
Q gi|254780834|r  589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES  633 (648)
Q Consensus       589 ~~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~~  633 (648)
                      ..|..++..++.-|.++...+.-|....|-.-|++++.++.+++.
T Consensus        12 dPL~eQ~~~i~~yI~qAk~~~rfdEV~tL~~NL~EL~~E~~~~q~   56 (59)
T 1z0j_B           12 ELLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQKG   56 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999886899963267407546999999999999999998637


No 97 
>>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405} (A:)
Probab=37.08  E-value=20  Score=13.84  Aligned_cols=25  Identities=12%  Similarity=0.282  Sum_probs=13.1

Q ss_pred             CCCCCCCHHHHHHHCCCCCHHHHHH
Q ss_conf             2567741034554205997345232
Q gi|254780834|r  161 YAPDSRYSLREHLRQKGFSEEKIIE  185 (648)
Q Consensus       161 ~ap~~~~~l~~~l~~~~~~~~~~~~  185 (648)
                      +.-.++..|...+..+|++.+.+++
T Consensus        33 c~~~~~~tL~~a~~~~gid~~~ll~   57 (76)
T 2k53_A           33 CPSSMGESIEDACAVHGIDADKLVK   57 (76)
T ss_dssp             SCCCCCSBHHHHHHHHTCCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHCCCCHHHHHH
T ss_conf             8766777599999891999999999


No 98 
>>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* (A:)
Probab=36.93  E-value=20  Score=13.82  Aligned_cols=78  Identities=13%  Similarity=0.104  Sum_probs=54.5

Q ss_pred             HHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf             89998743554211343213662678988512681899617886622577788888877753697306752578888889
Q gi|254780834|r  282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS  361 (648)
Q Consensus       282 Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe  361 (648)
                      .++......+..++--++..++......+-..++.|++..+.|..+.+++.++++.+-   ..|..+--+ +-+..||+.
T Consensus       183 ~~~~~~~~~~d~ViiD~~~~~~~~~~~~l~~~ad~viiV~~~~~~~~~~~~~~~~~l~---~~~~~~~gv-vlN~~~~~~  258 (271)
T 3bfv_A          183 NLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIE---ATGAKLLGV-VLNRMPKDK  258 (271)
T ss_dssp             HHHHHHHHHCSEEEEECCCTTTCSHHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHH---TTTCEEEEE-EEEEECC--
T ss_pred             HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHH---HCCCCCEEE-EECCCCCCC
T ss_conf             9998544128889971788654799999999699899995887779999999999999---779982899-975807886


Q ss_pred             HH
Q ss_conf             97
Q gi|254780834|r  362 FI  363 (648)
Q Consensus       362 ~i  363 (648)
                      -.
T Consensus       259 ~~  260 (271)
T 3bfv_A          259 SA  260 (271)
T ss_dssp             --
T ss_pred             CC
T ss_conf             76


No 99 
>>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} PDB: 3hch_A* 1l1d_A (A:)
Probab=36.84  E-value=16  Score=14.67  Aligned_cols=14  Identities=21%  Similarity=0.290  Sum_probs=5.8

Q ss_pred             CCCCHHHHCCCCCC
Q ss_conf             06885351012442
Q gi|254780834|r  147 RGIDSHAIEMFKLG  160 (648)
Q Consensus       147 Rg~~~~~~~~f~lG  160 (648)
                      |-++.+-...+.-|
T Consensus        29 ~pftg~y~~~~~~G   42 (146)
T 3hcg_A           29 YAFSHEYDHLFKPG   42 (146)
T ss_dssp             CTTCSGGGGCCCSE
T ss_pred             CCCCCCCCCCCCCC
T ss_conf             99873343446668


No 100
>>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} (A:39-159)
Probab=36.69  E-value=20  Score=13.79  Aligned_cols=69  Identities=17%  Similarity=0.256  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             889999999999999858999999999999998724127------989999999999999999999884132676
Q gi|254780834|r  571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG------EAEKTAILISILHEVHIQIHQIESQEAMIE  639 (648)
Q Consensus       571 ~~d~~e~~~~~l~l~~r~~~L~r~l~ele~~l~e~~~~~------d~e~~~~l~~el~elk~~L~~l~~~Eal~e  639 (648)
                      .+.+.+...+...+......+..+...+.++|......+      +.+....+..+..+++.++..++....-++
T Consensus        31 vd~i~~ld~~~r~~~~~~~~l~~~~n~isk~i~~~~~~~~~~~~~~~~e~~~L~~~~~~lk~~i~~le~~~~~~~  105 (121)
T 1wle_A           31 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLE  105 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999998567751000268999999999999999999999999999


No 101
>>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} (9:)
Probab=36.68  E-value=15  Score=14.83  Aligned_cols=26  Identities=27%  Similarity=0.574  Sum_probs=17.7

Q ss_pred             EECCCCCCCCCCEEEECCCCEEEECCCCC
Q ss_conf             53458888587879817897467136888
Q gi|254780834|r   41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHV   69 (648)
Q Consensus        41 ~~cPfh~ektpsf~v~~~~~~~~cf~c~~   69 (648)
                      -.|||..-..=   --..-|+|+|=+|+.
T Consensus        27 y~C~fCgk~~v---kR~a~GIW~C~~C~~   52 (72)
T 3jyw_9           27 YDCSFCGKKTV---KRGAAGIWTCSCCKK   52 (72)
T ss_dssp             BCCSSCCSSCB---SBCSSSCBCCSSSCC
T ss_pred             CCCCCCCCCEE---EEEEEEEEECCCCCC
T ss_conf             40999999735---898888878899998


No 102
>>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} (A:196-350)
Probab=36.38  E-value=20  Score=13.75  Aligned_cols=75  Identities=8%  Similarity=-0.020  Sum_probs=34.9

Q ss_pred             CCHHHHHHCCCHHHHHHHHHHCCC--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             888899720366889988641499--279999999853023314579999999998854179989999999999999
Q gi|254780834|r  357 EDPDSFIRCYGKTAFEKLIVESLP--LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR  431 (648)
Q Consensus       357 ~DPDe~ir~~G~eaf~~ll~~A~~--l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~yl~~la~~  431 (648)
                      .|||..+|......+..+.....+  +.+.++..+.+...-.+++-|..+..-+..++...++.......+..+.+.
T Consensus        18 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~   94 (155)
T 1b3u_A           18 SDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL   94 (155)
T ss_dssp             TCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             35572267888866776513798799998878999998751578899999985331000200010133326899998


No 103
>>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} (W:1-61)
Probab=36.32  E-value=19  Score=14.03  Aligned_cols=26  Identities=19%  Similarity=0.326  Sum_probs=17.8

Q ss_pred             EECCCCCCCCCCEEEECCCCEEEECCCCC
Q ss_conf             53458888587879817897467136888
Q gi|254780834|r   41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHV   69 (648)
Q Consensus        41 ~~cPfh~ektpsf~v~~~~~~~~cf~c~~   69 (648)
                      -.|||..-.+-   --...|+|+|=.||.
T Consensus        28 y~C~fCgk~~v---kR~a~GIW~C~~C~~   53 (61)
T 1ffk_W           28 YKCPVCGFPKL---KRASTSIWVCGHCGY   53 (61)
T ss_pred             CCCCCCCCCEE---EEEEEEEEECCCCCC
T ss_conf             45999998504---777887897478998


No 104
>>3fmc_A Putative succinylglutamate desuccinylase / aspartoacylase; YP_926482.1, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Shewanella amazonensis SB2B} (A:289-364)
Probab=35.89  E-value=17  Score=14.44  Aligned_cols=15  Identities=13%  Similarity=0.213  Sum_probs=7.2

Q ss_pred             CCEEEECCCCEEEEC
Q ss_conf             787981789746713
Q gi|254780834|r   51 PSFHCNDSKGFYYCF   65 (648)
Q Consensus        51 psf~v~~~~~~~~cf   65 (648)
                      ||-+|+...+.|+||
T Consensus        60 aSASV~qGTeLYKv~   74 (76)
T 3fmc_A           60 ASASVHQGTELYKVX   74 (76)
T ss_dssp             SSSEECTTCEEEEEE
T ss_pred             CCCCCCCCCEEEEEE
T ss_conf             887337999999986


No 105
>>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} (A:)
Probab=35.19  E-value=21  Score=13.61  Aligned_cols=36  Identities=14%  Similarity=0.199  Sum_probs=29.4

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             681899617886622577788888877753697306752
Q gi|254780834|r  314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL  352 (648)
Q Consensus       314 ~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~  352 (648)
                      .++|+++.|+...+++|..-|++++...   |-.+.++.
T Consensus         2 ~~~ILv~vd~s~~s~~al~~a~~~a~~~---~~~i~~l~   37 (141)
T 1jmv_A            2 YKHILVAVDLSEESPILLKKAVGIAKRH---DAKLSIIH   37 (141)
T ss_dssp             CSEEEEEECCSTTHHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHHC---CCCEEEEE
T ss_conf             9829999889989999999999999875---99489999


No 106
>>2f46_A Hypothetical protein; 7380613, DUF442, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.41A {Neisseria meningitidis Z2491} (A:)
Probab=35.17  E-value=21  Score=13.60  Aligned_cols=24  Identities=25%  Similarity=0.177  Sum_probs=9.2

Q ss_pred             CCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             789899898859997999999999
Q gi|254780834|r   71 GDHLSFLSALLGCSFIESVQRLAA   94 (648)
Q Consensus        71 gd~~~f~~~~~~~~f~ea~~~la~   94 (648)
                      +-++-.+|.+.|+++.+|++.+..
T Consensus       116 s~lv~~yl~~~g~s~~~A~~~v~~  139 (156)
T 2f46_A          116 SLLWGFRRAAEGXPVDEIIRRAQA  139 (156)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             999999999839999999999998


No 107
>>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} (A:)
Probab=34.86  E-value=21  Score=13.56  Aligned_cols=77  Identities=13%  Similarity=0.132  Sum_probs=51.4

Q ss_pred             HHHH-HHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHH---------HHHHHHHHHHHHHCCC--CEE
Q ss_conf             8999-874355421134321366267898851268189961788662257---------7788888877753697--306
Q gi|254780834|r  282 DVLS-LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRA---------AYKAIDLVLCHLIPGN--RVN  349 (648)
Q Consensus       282 Dvi~-l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kA---------a~Ra~e~~l~~l~~g~--~v~  349 (648)
                      +++. +++.|+...+.|.||-++ +....+....+.|.+.+||.......         .+++++.   +.+.|.  .++
T Consensus        23 ~i~~~~~~~g~~~~l~Tng~~~~-~~~~~~~~~~~~i~isld~~~~~~~~~~~~~~~~~~~~~i~~---l~~~~~~~~i~   98 (182)
T 3can_A           23 DILKRCGQQGIHRAVDTTLLARK-ETVDEVXRNCELLLIDLKSXDSTVHQTFCDVPNELILKNIRR---VAEADFPYYIR   98 (182)
T ss_dssp             HHHHHHHHTTCCEEEECTTCCCH-HHHHHHHHTCSEEEEECCCSCHHHHHHHHSSCSHHHHHHHHH---HHHTTCCEEEE
T ss_pred             HHHHHHHHCCCCEEEEECCCHHH-HHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCEEE
T ss_conf             99999987799299972521107-777766520000024322003888887873025788866666---76630231244


Q ss_pred             EEECCCCCC-HHHH
Q ss_conf             752578888-8899
Q gi|254780834|r  350 FVLLSRGED-PDSF  362 (648)
Q Consensus       350 vv~LP~G~D-PDe~  362 (648)
                      ++..|.-.| ++++
T Consensus        99 ~~~~~~~~d~~~ei  112 (182)
T 3can_A           99 IPLIEGVNADEKNI  112 (182)
T ss_dssp             EEECBTTTCSHHHH
T ss_pred             EECCCCCCCCHHHH
T ss_conf             30227975999999


No 108
>>3f62_A Interleukin 18 binding protein; immunoglobulin, IL-18, beta trefoil, cytokine, secreted; 2.00A {Ectromelia virus} (A:)
Probab=34.69  E-value=16  Score=14.75  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=13.1

Q ss_pred             CCCCCEEEECCCCEEEECCCCCC
Q ss_conf             85878798178974671368888
Q gi|254780834|r   48 EKTPSFHCNDSKGFYYCFSCHVK   70 (648)
Q Consensus        48 ektpsf~v~~~~~~~~cf~c~~~   70 (648)
                      -|-|.+.+...-|-|||-||-+.
T Consensus         6 ~kcpnl~ivtssgef~c~gcv~~   28 (109)
T 3f62_A            6 TKCPNLDIVTSSGEFHCSGCVEH   28 (109)
T ss_dssp             CCSCCCEEEEETTEEEEEEEECS
T ss_pred             CCCCCCCEEECCCCEEECHHHHH
T ss_conf             33898326813682886315542


No 109
>>2iye_A Copper-transporting ATPase; hydrolase, P-type ATPase, CPX-ATPase, COPB, heavy metal translocation; 2.6A {Sulfolobus solfataricus} (A:1-39,A:139-263)
Probab=34.38  E-value=21  Score=13.50  Aligned_cols=121  Identities=21%  Similarity=0.175  Sum_probs=60.6

Q ss_pred             CCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHH--HHHCCCCCCHHHHHCCCCHHH-HHHHH---
Q ss_conf             676535210110817888864331000023567870899714388999--874355421134321366267-89885---
Q gi|254780834|r  238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS--LCQAGVQNVVSSLGTALTEYQ-LRLLW---  311 (648)
Q Consensus       238 eT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~--l~~~G~~n~va~~Gtalt~~~-~~~l~---  311 (648)
                      +|.+|+|.-+|=+.-.+.+..++.+        -..+|+......+..  +.+.||.++.|-+    +++| .+.+.   
T Consensus        29 ~~~~~~~~~~~P~a~e~I~~L~~~G--------i~v~IiTGD~~~~a~~ia~~lgI~~v~a~v----~p~~K~~iv~~L~   96 (164)
T 2iye_A           29 DTIIFDKTGTLPNLKDYLEKLKNEG--------LKIIILSGDKEDKVKELSKELNIQEYYSNL----SPEDKVRIIEKLK   96 (164)
T ss_dssp             CEEEEESTTTTSCCHHHHHHHHGGG--------CEEEEECSSCHHHHHHHHHHHTCSEEECSC----CHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHCC--------CCEEEECCCCCCCCHHHHHHHCHHHHHHCC----CHHHHHHHHHHHH
T ss_conf             9999918852312999999999759--------927982387421101479985302534023----5788988884552


Q ss_pred             HCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CCCCHHH-HHHCCCHHHHHHHHHHCCCH
Q ss_conf             1268189961788662257778888887775369730675257-8888889-97203668899886414992
Q gi|254780834|r  312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS-RGEDPDS-FIRCYGKTAFEKLIVESLPL  381 (648)
Q Consensus       312 r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP-~G~DPDe-~ir~~G~eaf~~ll~~A~~l  381 (648)
                      +....|.++=||-  .--++++.++..         +-+-.-+ .-+.-.| .+.......+..++..++-.
T Consensus        97 ~~g~~Va~VGDg~--ND~~aL~~AdVG---------Ia~~~~~~~a~~aADvvl~~~~l~~i~~~i~~sR~~  157 (164)
T 2iye_A           97 QNGNKVLMIGDGV--NDAAALALADVS---------VAMGNGVDISKNVADIILVSNDIGTLLGLIKNRKRL  157 (164)
T ss_dssp             HTTCCEEEEECST--TTHHHHHHSSEE---------EEESTTTCSSCCCSSEEETTCCHHHHHHHHTCC---
T ss_pred             CCCCEEEEEECCC--CHHHHHHHCCEE---------EECCCCCHHHHHHCCEEEECCCHHHHHHHHHHHHHH
T ss_conf             2560589994231--046688648799---------983673088998579999579989999999999999


No 110
>>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} (A:)
Probab=34.06  E-value=22  Score=13.46  Aligned_cols=25  Identities=20%  Similarity=0.038  Sum_probs=17.7

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             6818996178866225777888888
Q gi|254780834|r  314 SPRIVLCFDGDDPGLRAAYKAIDLV  338 (648)
Q Consensus       314 ~~~vvl~fDgD~AG~kAa~Ra~e~~  338 (648)
                      ...+|+.-..+..|+-|++=++..+
T Consensus       132 ~~~~vvVHC~~G~gRsgtf~~~~~l  156 (212)
T 1fpz_A          132 NYRKTLIHSYGGLGRSCLVAACLLL  156 (212)
T ss_dssp             TTCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf             6990898899999668999999999


No 111
>>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* (A:206-382)
Probab=33.40  E-value=22  Score=13.38  Aligned_cols=12  Identities=0%  Similarity=-0.045  Sum_probs=4.6

Q ss_pred             CCCHHHHHHHHH
Q ss_conf             799889999999
Q gi|254780834|r  510 YDNNELQKLWSF  521 (648)
Q Consensus       510 f~~~~~~~L~~~  521 (648)
                      +.++.++.+...
T Consensus        36 ~~~~~~~~l~~~   47 (177)
T 3kb9_A           36 RKHPAYRRAALL   47 (177)
T ss_dssp             HTSHHHHHHHHH
T ss_pred             HHCCHHHHHHHH
T ss_conf             608258999999


No 112
>>2etv_A Iron(III) ABC transporter, periplasmic iron- binding protein, putative; TM0189, structural genomics; HET: MLY; 1.70A {Thermotoga maritima MSB8} (A:176-346)
Probab=33.40  E-value=20  Score=13.73  Aligned_cols=39  Identities=18%  Similarity=0.258  Sum_probs=27.5

Q ss_pred             HHHHCCCCCCHHHHHCC---CCHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             98743554211343213---6626789885126818996178866
Q gi|254780834|r  285 SLCQAGVQNVVSSLGTA---LTEYQLRLLWKLSPRIVLCFDGDDP  326 (648)
Q Consensus       285 ~l~~~G~~n~va~~Gta---lt~~~~~~l~r~~~~vvl~fDgD~A  326 (648)
                      .+..+|..|+.+..|+.   ++.|++   -...+.|||..+++..
T Consensus        27 ~i~~aGg~Nv~~~~~~~~~~is~E~i---l~~~PDvIi~~~~~~~   68 (171)
T 2etv_A           27 PFVVLHARNVVDELGEGHXFIDPEXL---LVWNPEYIFIDENGLS   68 (171)
T ss_dssp             HHHHTTCEETTGGGCSEEEECCTHHH---HHHCCSEEEEEGGGHH
T ss_pred             HHHHHCCCCHHHHCCCCCCCCCHHHH---HHHCCCEEEEECCCCC
T ss_conf             99981880202214678741589899---7609899999579854


No 113
>>1juh_A Quercetin 2,3-dioxygenase; copper, cupin, glycoprotein, beta sandwich, oxidoreductase; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} (A:1-23,A:222-350)
Probab=33.36  E-value=15  Score=14.94  Aligned_cols=10  Identities=50%  Similarity=0.521  Sum_probs=7.4

Q ss_pred             CCCCEECCCC
Q ss_conf             5530010387
Q gi|254780834|r  228 GESVKYLNSP  237 (648)
Q Consensus       228 ~~~~KYlNSp  237 (648)
                      -.+||||||.
T Consensus        22 ~~GPKYLNs~   31 (152)
T 1juh_A           22 YSGPKYLNSQ   31 (152)
T ss_dssp             TCSCEEEECT
T ss_pred             CCCCHHHCCC
T ss_conf             8851100256


No 114
>>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} (A:260-564)
Probab=33.05  E-value=22  Score=13.34  Aligned_cols=123  Identities=14%  Similarity=0.182  Sum_probs=67.4

Q ss_pred             HHHCCCCHHHHCCCCCCCCCCCC-CHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEEC
Q ss_conf             98506885351012442256774-10345542059973452320121003465410000167168889707785888501
Q gi|254780834|r  144 LDERGIDSHAIEMFKLGYAPDSR-YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG  222 (648)
Q Consensus       144 l~~Rg~~~~~~~~f~lG~ap~~~-~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~g  222 (648)
                      +.++.|++..|--|+-|-|--+- +.|..++...|.+.++..+-                   |  =+.|.+|=+.  .+
T Consensus        18 i~g~~L~d~~iv~~GAGsAgigia~ll~~~~~~~gls~e~a~~~-------------------i--~lvD~~Gli~--~~   74 (305)
T 1pj3_A           18 VISKPISEHKILFLGAGEAALGIANLIVXSXVENGLSEQEAQKK-------------------I--WXFDKYGLLV--KG   74 (305)
T ss_dssp             HHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHT-------------------E--EEEETTEECB--TT
T ss_pred             HHCCCHHHCEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHCCCC-------------------E--EEECCCCEEE--CC
T ss_conf             85897234468996354589999999999530137853323243-------------------8--9974606070--68


Q ss_pred             CC-CCCCCCCEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCC
Q ss_conf             00-14655300103876765352101108178888643310000235678708997143889998743554211343213
Q gi|254780834|r  223 RT-LSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA  301 (648)
Q Consensus       223 R~-l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gta  301 (648)
                      |- +.+..++.|-         +..                          ...-.-.-.|||...+.-+--.++..|.+
T Consensus        75 r~~~~~~~k~~~~---------~~~--------------------------~~~~~~~L~evv~~vkptvLiG~S~~~g~  119 (305)
T 1pj3_A           75 RKAKIDSYQEPFT---------HSA--------------------------PESIPDTFEDAVNILKPSTIIGVAGAGRL  119 (305)
T ss_dssp             CSSCCCTTTGGGC---------BCC--------------------------CSSCCSSHHHHHHHHCCSEEEECCCSSCC
T ss_pred             CCCCCHHHHHHHH---------HHC--------------------------CCCCCCCHHHHHHHCCCCEEEEECCCCCC
T ss_conf             7542688899998---------602--------------------------23433203456650477469974576666


Q ss_pred             CCHHHHHHHHHCCCE-EEEEECCC
Q ss_conf             662678988512681-89961788
Q gi|254780834|r  302 LTEYQLRLLWKLSPR-IVLCFDGD  324 (648)
Q Consensus       302 lt~~~~~~l~r~~~~-vvl~fDgD  324 (648)
                      ||++.++.+..++++ |||.+=+=
T Consensus       120 Fte~vi~~Ma~~~~rPIIFaLSNP  143 (305)
T 1pj3_A          120 FTPDVIRAXASINERPVIFALSNP  143 (305)
T ss_dssp             SCHHHHHHHHHHCSSCEEEECCSS
T ss_pred             CCHHHHHHHHHCCCCCEEEECCCC
T ss_conf             898999999854899779980798


No 115
>>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcription factors); 2.00A {Drosophila melanogaster} (B:)
Probab=32.91  E-value=22  Score=13.32  Aligned_cols=49  Identities=29%  Similarity=0.407  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             799999999981885-87768203677788999999999999999997326
Q gi|254780834|r   85 FIESVQRLAAIAGVP-LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKN  134 (648)
Q Consensus        85 f~ea~~~la~~~gi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (648)
                      -+|.|+..|+-.||. ++. +....-...-.-++-++.+.|.+|.++--++
T Consensus         8 ~~esik~iAeS~Gi~~l~d-e~a~~LA~DVeyRi~eiiQeA~KFMrhskR~   57 (70)
T 1taf_B            8 SAESMKVIAESIGVGSLSD-DAAKELAEDVSIKLKRIVQDAAKFMNHAKRQ   57 (70)
T ss_dssp             CHHHHHHHHHHTTCCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             7889999999859888899-9999989999999999999999999974667


No 116
>>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens} (A:)
Probab=32.80  E-value=22  Score=13.30  Aligned_cols=44  Identities=2%  Similarity=-0.091  Sum_probs=29.1

Q ss_pred             CCCCE-EEECC-CCCCCC-HHHHHHHHCCCCHHHHHHHHHHHH-CCCC
Q ss_conf             78974-67136-888878-989989885999799999999981-8858
Q gi|254780834|r   57 DSKGF-YYCFS-CHVKGD-HLSFLSALLGCSFIESVQRLAAIA-GVPL  100 (648)
Q Consensus        57 ~~~~~-~~cf~-c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~-gi~~  100 (648)
                      ..+.+ -||-. =|.+|- +.-++|...|+++.+|++.+-.+- ++.+
T Consensus        80 ~~~~VlVHC~~G~~Rs~~vv~ayLm~~~~~~~~~A~~~v~~~R~~~~~  127 (145)
T 2nt2_A           80 HGSKCLVHSKMGVSRSASTVIAYAMKEYGWNLDRAYDYVKERRTVTKP  127 (145)
T ss_dssp             TTCEEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHCTTCCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
T ss_conf             473289980102360799999999998199999999999997996789


No 117
>>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B (B:1-45)
Probab=32.78  E-value=17  Score=14.39  Aligned_cols=15  Identities=33%  Similarity=0.820  Sum_probs=10.7

Q ss_pred             EEECCCCEEE--ECCCC
Q ss_conf             9817897467--13688
Q gi|254780834|r   54 HCNDSKGFYY--CFSCH   68 (648)
Q Consensus        54 ~v~~~~~~~~--cf~c~   68 (648)
                      .||...+.||  ||.|-
T Consensus        27 iVNSnGel~HeqCFVCa   43 (45)
T 3f6q_B           27 IVNSNGELYHEQCFVCA   43 (45)
T ss_dssp             EEEETTEEEETTTSSCT
T ss_pred             EEEECCCEECCCCCCCC
T ss_conf             99979846763248864


No 118
>>3cxj_A Uncharacterized protein; PSI-II, structural genomics, protein structure initiative; 2.80A {Methanothermobacter thermautotrophicusstr} (A:)
Probab=32.53  E-value=23  Score=13.27  Aligned_cols=55  Identities=13%  Similarity=0.032  Sum_probs=35.2

Q ss_pred             HHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
Q ss_conf             134321366267898851268189961788662257778888887775369730675257888888997
Q gi|254780834|r  295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI  363 (648)
Q Consensus       295 va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~i  363 (648)
                      +-+||++++++|.+.|..+..+          =++.-+.  ++...++  -+.+.|.++|++++|..+.
T Consensus        54 ii~~gi~is~~H~~~L~~l~~e----------eR~efl~--~i~~~Ll--~m~vdf~~~pp~~~p~~i~  108 (165)
T 3cxj_A           54 LIACATSVSPEHQAGIRALSXE----------KRTEFIW--KVRFTLN--RFGVDFQLDHPENVLNSYL  108 (165)
T ss_dssp             EEEEEEECCTTHHHHHHHSCHH----------HHHHHHH--HHHHHHT--TTTCEEEEECTTSCCCEEE
T ss_pred             EEEEEEEECHHHHHHHHHCCHH----------HHHHHHH--HHHHHHH--HCCCCEEEECCCCCCCEEE
T ss_conf             9999988889999999858988----------8999999--9999999--6089789848834686589


No 119
>>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} (A:)
Probab=32.31  E-value=23  Score=13.24  Aligned_cols=31  Identities=16%  Similarity=0.235  Sum_probs=18.7

Q ss_pred             EECCCCC-CCCHHHHHHH-H-CCCCHHHHHHHHH
Q ss_conf             7136888-8789899898-8-5999799999999
Q gi|254780834|r   63 YCFSCHV-KGDHLSFLSA-L-LGCSFIESVQRLA   93 (648)
Q Consensus        63 ~cf~c~~-~gd~~~f~~~-~-~~~~f~ea~~~la   93 (648)
                      .||+||+ =||.+.=+.+ . ++.+-.+|+-.|.
T Consensus         5 RCFTCGkvig~~we~y~~~~~~g~~~~~aLD~Lg   38 (55)
T 1ef4_A            5 RCLSCGKPVSAYFNEYQRRVADGEDPKDVLDDLG   38 (55)
T ss_dssp             SCSCTTSCCHHHHHHHHHHHHHTCCHHHHHHHHT
T ss_pred             EECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf             6089976889999999999986999789998849


No 120
>>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* (A:219-379)
Probab=32.15  E-value=23  Score=13.22  Aligned_cols=45  Identities=20%  Similarity=0.273  Sum_probs=31.7

Q ss_pred             CCCCCEEEEEEEE--------------CCCCEEEEECCCCCCC----CCCEECCCCCCCCCCC
Q ss_conf             0016716888970--------------7785888501001465----5300103876765352
Q gi|254780834|r  200 DRFRNRLIFPIRS--------------SRGQVIAFGGRTLSKG----ESVKYLNSPETILFHK  244 (648)
Q Consensus       200 d~Fr~Ri~fPi~~--------------~~g~~i~f~gR~l~~~----~~~KYlNSpeT~if~K  244 (648)
                      ..-.|||++.-+.              ..||-|.|.||.+...    ..-+|++-|++.+--|
T Consensus        18 ~~a~gRIivs~faSni~RIq~i~~~A~~~~Rkv~~~Grsl~~~~~~a~~lg~l~~p~~~i~~~   80 (161)
T 3bk2_A           18 GRAPGRVFVTTFASHIHRIQSVIWAAEKYGRKVAXEGRSXLKFSRIALELGYLKVKDRLYTLE   80 (161)
T ss_dssp             HHCSSCEEEECCTTCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHHHHHTTSCCCSSCCBCTG
T ss_pred             HHCCCCEEEEECCCHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCCCCCCCCEECHH
T ss_conf             970697798522323889999999999849903532312334345676527645764321415


No 121
>>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens} (A:)
Probab=32.14  E-value=23  Score=13.22  Aligned_cols=59  Identities=8%  Similarity=0.143  Sum_probs=38.2

Q ss_pred             EEEECCCCCCCCCCEEE-------------ECCCC-EEEECC-CCCCCCH-HHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             57534588885878798-------------17897-467136-8888789-899898859997999999999818
Q gi|254780834|r   39 YWACCPFHDEKTPSFHC-------------NDSKG-FYYCFS-CHVKGDH-LSFLSALLGCSFIESVQRLAAIAG   97 (648)
Q Consensus        39 ~~~~cPfh~ektpsf~v-------------~~~~~-~~~cf~-c~~~gd~-~~f~~~~~~~~f~ea~~~la~~~g   97 (648)
                      ..-.||..+..++....             ...+. ..||-+ =|.+|-+ +-++|...++++.+|++.+..+-.
T Consensus        52 ~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RSgtv~~ayLm~~~~~~~~~A~~~v~~~Rp  126 (160)
T 1yz4_A           52 TYLRIPVADTPEVPIKKHFKECINFIHCCRLNGGNCLVHSFAGISRSTTIVTAYVMTVTGLGWRDVLEAIKATRP  126 (160)
T ss_dssp             EEEEECCCSCTTSCGGGGHHHHHHHHHHHHHTTCCEEEEETTSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHTCT
T ss_pred             CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf             035413345866799999999999888753010478762331246249999999999849689999999999799


No 122
>>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human papillomavirus type 16} (A:)
Probab=32.13  E-value=23  Score=13.22  Aligned_cols=14  Identities=21%  Similarity=0.356  Sum_probs=6.7

Q ss_pred             CCCCCCCEEEEEEE
Q ss_conf             00001671688897
Q gi|254780834|r  198 SYDRFRNRLIFPIR  211 (648)
Q Consensus       198 ~~d~Fr~Ri~fPi~  211 (648)
                      .||.=+.|+++-++
T Consensus        90 ~ynPe~eRLVW~l~  103 (505)
T 1dzl_A           90 FYNPDTQRLVWACV  103 (505)
T ss_dssp             TSCTTTEEEEEEEE
T ss_pred             CCCCCCCEEEEEEE
T ss_conf             76987656777888


No 123
>>2vqp_A Matrix protein; viral protein, peripheral membrane protein, RSV, virion, envelope protein; HET: GOL; 1.60A {Human respiratory syncytial virus A2} (A:125-257)
Probab=31.85  E-value=15  Score=14.93  Aligned_cols=18  Identities=22%  Similarity=0.360  Sum_probs=7.8

Q ss_pred             CCEEEECCCCC-CCCCCEE
Q ss_conf             75575345888-8587879
Q gi|254780834|r   37 GDYWACCPFHD-EKTPSFH   54 (648)
Q Consensus        37 ~~~~~~cPfh~-ektpsf~   54 (648)
                      ++.++||-||| |+.-+++
T Consensus        18 HdlIAlCdF~n~~~~~~v~   36 (133)
T 2vqp_A           18 HDIIALCEFENIVTSKKVI   36 (133)
T ss_dssp             EEEEEEEEEEETTTCCEEE
T ss_pred             HHHEECCCCCHHHCCCEEE
T ss_conf             2220101540222186241


No 124
>>2pt0_A MYO-inositol hexaphosphate phosphohydrolase; PTP, protein tyrosine phosphatase, phytase, P-loop, cysteine-sulfonic acid, oxidized thiol.; 1.70A {Selenomonas ruminantium} (A:58-129,A:199-340)
Probab=31.46  E-value=23  Score=13.13  Aligned_cols=89  Identities=7%  Similarity=-0.114  Sum_probs=57.2

Q ss_pred             HHHHHHHHHC--CHHHH--HHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEE-----------CCCC-EEEEC-CCC
Q ss_conf             8999998748--88887--541222101588777775575345888858787981-----------7897-46713-688
Q gi|254780834|r    6 DFIKDLLIHI--PISNL--IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN-----------DSKG-FYYCF-SCH   68 (648)
Q Consensus         6 ~~i~~i~~~~--~i~~v--v~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~-----------~~~~-~~~cf-~c~   68 (648)
                      ..+..|++++  +|+.|  =-+-=-.++.|-      -.-.|||-+...|+...-           .++. ..||. |+|
T Consensus        52 ~~~~~~~~~~~~~~~~~dlr~e~~~~e~~gi------~y~~ip~~D~~~P~~e~l~~~v~~I~~~~~~~~VlVHC~aG~G  125 (214)
T 2pt0_A           52 NVAAKLREKTAGPIYDVDLRQEQEVAEAAGM------RYFRIAATDHVWPTPENIDRFLAFYRTLPQDAWLHFHXEAGVG  125 (214)
T ss_dssp             HHHHHHHTTCSSCEEEEEEECHHHHHHHTTC------EEEEEEECTTSCCCHHHHHHHHHHHHTCCTTCEEEEECSSSSH
T ss_pred             HHHHHHHHCCCCCEEEEECCCHHHHHHHCCC------EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             9999985347998799988889999985697------4999335888898989999999999738999708998189996


Q ss_pred             CCCCHHH-HHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf             8878989-9898859997999999999818858
Q gi|254780834|r   69 VKGDHLS-FLSALLGCSFIESVQRLAAIAGVPL  100 (648)
Q Consensus        69 ~~gd~~~-f~~~~~~~~f~ea~~~la~~~gi~~  100 (648)
                      ..|-++. ++|...+.+..||+..+...-..-+
T Consensus       126 RTgtiia~yLm~~~~~~~~eai~~lr~~R~~~v  158 (214)
T 2pt0_A          126 RTTAFMVMTDMLKNPSVSLKDILYRQHEIGGFY  158 (214)
T ss_dssp             HHHHHHHHHHHHHCTTSCHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf             899999999998676999999999998751765


No 125
>>3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A {Bacillus stearothermophilus} (A:1-131,A:251-305)
Probab=31.29  E-value=24  Score=13.11  Aligned_cols=35  Identities=37%  Similarity=0.474  Sum_probs=22.7

Q ss_pred             CEE-EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             818-9961788662257778888887775369730675
Q gi|254780834|r  315 PRI-VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV  351 (648)
Q Consensus       315 ~~v-vl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv  351 (648)
                      ++| |+.--||.+|.||+.|++=.  .....|.+|.-+
T Consensus         2 KrI~IltsGGdaPGlNa~Ir~vv~--~a~~~g~ev~G~   37 (186)
T 3pfk_A            2 KRIGVLTSGGDSPGMNAAIRSVVR--KAIYHGVEVYGV   37 (186)
T ss_dssp             CEEEEEEESSCCTTHHHHHHHHHH--HHHHTTCEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH--HHHHCCCEEEEE
T ss_conf             889998768876899999999999--999779999998


No 126
>>1vcp_A Semliki forest virus capsid protein; virus coat protein, polyprotein, transmembrane, glycoprotein, nucleocapsid protein, viral protein; 3.00A {Semliki forest virus} (A:64-149)
Probab=31.16  E-value=24  Score=13.09  Aligned_cols=12  Identities=42%  Similarity=0.847  Sum_probs=10.9

Q ss_pred             EEEECCCCEEEE
Q ss_conf             897077858885
Q gi|254780834|r  209 PIRSSRGQVIAF  220 (648)
Q Consensus       209 Pi~~~~g~~i~f  220 (648)
                      ||.|-+|+|||.
T Consensus        41 pi~DN~GrVVaI   52 (86)
T 1vcp_A           41 PIFDNKGRVVAI   52 (86)
T ss_dssp             EEECTTSCEEEE
T ss_pred             CCCCCCCCEEEE
T ss_conf             117688879999


No 127
>>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} (A:1-120)
Probab=31.15  E-value=24  Score=13.09  Aligned_cols=93  Identities=12%  Similarity=0.202  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             8851112899999999986543332025689-988999999999999985899999999999999872412798999999
Q gi|254780834|r  539 QRLCERGFGELLKQLDRQVRDAGLWSATTEA-NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL  617 (648)
Q Consensus       539 ~~L~~~~l~elL~~L~~~~~~~~~~~~~~e~-~~~d~~e~~~~~l~l~~r~~~L~r~l~ele~~l~e~~~~~d~e~~~~l  617 (648)
                      ..+.-..+..-+.++.........|...... ....-...+...+..   ...+.....++...+.-+....|.+....+
T Consensus        23 ~~l~l~~~~~rl~eLe~~l~~p~fw~d~~~a~~i~ke~~~L~~~v~~---~~~l~~~~~dl~~~~el~~ee~D~e~~e~~   99 (120)
T 1gqe_A           23 GYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDT---LDQXKQGLEDVSGLLELAVEADDEETFNEA   99 (120)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             66798999999999999860972454999999999999999999999---999999999899999987502246799999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999998841
Q gi|254780834|r  618 ISILHEVHIQIHQIESQ  634 (648)
Q Consensus       618 ~~el~elk~~L~~l~~~  634 (648)
                      ..++.++.+++..++-.
T Consensus       100 ~~el~~l~~~l~~lE~~  116 (120)
T 1gqe_A          100 VAELDALEEKLAQLEFR  116 (120)
T ss_dssp             HHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999999999999874


No 128
>>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} (A:104-157)
Probab=31.08  E-value=24  Score=13.08  Aligned_cols=32  Identities=25%  Similarity=0.454  Sum_probs=21.3

Q ss_pred             ECCCCCCCCCCEEEECCCC--EEEECCCCCCCCH
Q ss_conf             3458888587879817897--4671368888789
Q gi|254780834|r   42 CCPFHDEKTPSFHCNDSKG--FYYCFSCHVKGDH   73 (648)
Q Consensus        42 ~cPfh~ektpsf~v~~~~~--~~~cf~c~~~gd~   73 (648)
                      |||...-----+.|+..++  .-.|=.||..|++
T Consensus         2 LC~~C~NPET~~~i~~k~~~I~~~C~ACG~~s~v   35 (54)
T 2e9h_A            2 LCPECENPETDLHVNPKKQTIGNSCKACGYRGML   35 (54)
T ss_dssp             SCTTTCCSCCEEEEETTTTEEEEECSSSCCEEEC
T ss_pred             ECCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCC
T ss_conf             9899999865999935875898573236998863


No 129
>>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} (A:1-70,A:158-346)
Probab=30.76  E-value=16  Score=14.70  Aligned_cols=63  Identities=11%  Similarity=0.018  Sum_probs=37.1

Q ss_pred             EEEEECCHHHHHHHHHCCCCCCHH---HHHCCCCHHHHHHHHHCCCE--E-EEEECCCCCCHHHHHHHH
Q ss_conf             089971438899987435542113---43213662678988512681--8-996178866225777888
Q gi|254780834|r  273 FIILVEGYMDVLSLCQAGVQNVVS---SLGTALTEYQLRLLWKLSPR--I-VLCFDGDDPGLRAAYKAI  335 (648)
Q Consensus       273 ~~i~vEGy~Dvi~l~~~G~~n~va---~~Gtalt~~~~~~l~r~~~~--v-vl~fDgD~AG~kAa~Ra~  335 (648)
                      +.|++=|-|||+..-..|.-..=|   -.|+|.--+-++.|++...+  | ++++|+-+-|...+...+
T Consensus        60 ~~i~~~~H~D~~~~~~~~~~~~Ga~Dn~sGva~lLelar~l~~~~~~~ti~fv~~~~EE~g~~Gs~~~~  128 (259)
T 1vho_A           60 GKLAFFAHVDETAFETNGKVVGKALDNRASCGVLVKVLEFLKRYDHPWDVYVVFSVQEETGCLGALTGA  128 (259)
T ss_dssp             CEEEEEEECCBCCEEETTEEEETTHHHHHHHHHHHHHHHHHTTCCCSSEEEEEEECTTSSSHHHHHHTT
T ss_pred             CCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEE
T ss_conf             738999715778997037488623214234788999999987336677742000022102676774210


No 130
>>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} (A:262-345,A:463-553)
Probab=30.69  E-value=14  Score=15.28  Aligned_cols=71  Identities=14%  Similarity=0.020  Sum_probs=35.5

Q ss_pred             HHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEE
Q ss_conf             89999850688535101244225677410345542059973452320121003465410000167168889707785888
Q gi|254780834|r  140 LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA  219 (648)
Q Consensus       140 a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~  219 (648)
                      -+.=|+.||++++.|+.|-+.--+...++.+++        +.+..+.        +...|.=..|.|+= +-.. -.+-
T Consensus        31 Ti~glrRRG~~peai~~F~~~~Gvsk~~~~i~~--------~~le~~~--------R~~ld~~a~R~~~V-~~vp-vevr   92 (175)
T 1qtq_A           31 TISGLRRRGYTAASIREFCKRIGVTKQDNTIEM--------ASLESCI--------REDLNENAPRAMAV-HALP-VEIR   92 (175)
T ss_dssp             BHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCH--------HHHHHHH--------HHHHHHHSCEECEE-TCEE-EEEE
T ss_pred             CHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCH--------HHHHHHH--------HHHHHHHCCCCEEE-CCEE-EEEE
T ss_conf             189999869987999999999588887774267--------8799999--------97505306543168-7674-6999


Q ss_pred             EECCCCCCC
Q ss_conf             501001465
Q gi|254780834|r  220 FGGRTLSKG  228 (648)
Q Consensus       220 f~gR~l~~~  228 (648)
                      ...+.+...
T Consensus        93 lYd~Lf~~~  101 (175)
T 1qtq_A           93 LYDRLFSVP  101 (175)
T ss_dssp             EECCSBSSS
T ss_pred             ECCCCCCCC
T ss_conf             367455668


No 131
>>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Lactobacillus salivarius UCC118} (A:1-64)
Probab=30.62  E-value=19  Score=13.88  Aligned_cols=18  Identities=22%  Similarity=0.182  Sum_probs=10.3

Q ss_pred             HHHHHHHHHCCCCHHHHC
Q ss_conf             578999985068853510
Q gi|254780834|r  138 KRLHYYLDERGIDSHAIE  155 (648)
Q Consensus       138 ~~a~~yl~~Rg~~~~~~~  155 (648)
                      .+.++||.++|+++++|.
T Consensus        36 ~Ei~~kL~~k~~~e~~i~   53 (64)
T 3e3v_A           36 KEVEDKLRSLDIHEDYIS   53 (64)
T ss_dssp             HHHHTTSGGGTCCHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHH
T ss_conf             999999986699999999


No 132
>>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} (A:)
Probab=30.54  E-value=24  Score=13.01  Aligned_cols=30  Identities=20%  Similarity=0.586  Sum_probs=22.8

Q ss_pred             CEEEECCCCCCCCCCEE----EECCCCEEEECCCCC
Q ss_conf             55753458888587879----817897467136888
Q gi|254780834|r   38 DYWACCPFHDEKTPSFH----CNDSKGFYYCFSCHV   69 (648)
Q Consensus        38 ~~~~~cPfh~ektpsf~----v~~~~~~~~cf~c~~   69 (648)
                      .|+  ||..+-+=-++-    ++|..+.|+|--|+.
T Consensus        14 ~y~--Cp~C~~~ys~Lda~~Lld~~~~~F~C~~C~~   47 (62)
T 1vd4_A           14 SFK--CPVCSSTFTDLEANQLFDPMTGTFRCTFCHT   47 (62)
T ss_dssp             EEE--CSSSCCEEEHHHHHHHEETTTTEEBCSSSCC
T ss_pred             CEE--CCCCCCEECHHHHHHHCCCCCCEEEECCCCC
T ss_conf             209--9898899467669871597899197358999


No 133
>>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} (A:84-98,A:399-592)
Probab=29.97  E-value=25  Score=12.93  Aligned_cols=28  Identities=18%  Similarity=0.132  Sum_probs=22.7

Q ss_pred             CCCCCCHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf             5788888899720366889988641499
Q gi|254780834|r  353 LSRGEDPDSFIRCYGKTAFEKLIVESLP  380 (648)
Q Consensus       353 LP~G~DPDe~ir~~G~eaf~~ll~~A~~  380 (648)
                      +.+..||+++++++|+|+++-++-.+.+
T Consensus        41 ~GN~i~~~e~~~~~g~D~lR~~ll~~~~   68 (209)
T 1iq0_A           41 NPDHPDKEEAARMVALGAIRFSMVKTEP   68 (209)
T ss_dssp             CTTCSCHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             CCHHHHHHHHHHHHHHHHEEEECCCCCC
T ss_conf             1103445567877615344532103576


No 134
>>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} (A:1-132,A:254-306)
Probab=29.78  E-value=25  Score=12.91  Aligned_cols=34  Identities=35%  Similarity=0.453  Sum_probs=17.5

Q ss_pred             CEE-EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             818-996178866225777888888777536973067
Q gi|254780834|r  315 PRI-VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF  350 (648)
Q Consensus       315 ~~v-vl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~v  350 (648)
                      ++| |+.--||.+|.||+.|++=.  .....|.+|.-
T Consensus         3 krI~IltsGGdaPGlNa~Ir~vv~--~a~~~g~~v~G   37 (185)
T 1pfk_A            3 KKIGVLTSGGDAPGMNAAIRGVVR--SALTEGLEVMG   37 (185)
T ss_dssp             CEEEEEECSSCCTTHHHHHHHHHH--HHHHTTCEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH--HHHHCCCEEEE
T ss_conf             649998658886778999999999--99877999999


No 135
>>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A (A:)
Probab=29.68  E-value=25  Score=12.90  Aligned_cols=36  Identities=22%  Similarity=0.485  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHH-HCCCCCHHHHHHHHHCCCCHHHHCC
Q ss_conf             99999999997-3267775789999850688535101
Q gi|254780834|r  121 IEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEM  156 (648)
Q Consensus       121 ~~~~~~~~~~~-l~~~~~~~a~~yl~~Rg~~~~~~~~  156 (648)
                      .+-|..|-++- ..+..-..-+.||++.||+++-|+.
T Consensus        18 i~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~   54 (70)
T 2w84_A           18 IATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDM   54 (70)
T ss_dssp             HHHHHHHHCSTTGGGSCHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHCCHHHHCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf             9999999568212018689999999975999999999


No 136
>>1efd_N Ferrichrome-binding periplasmic protein; periplasmic binding protein-siderophore complex, FHUD complex with gallichrome; HET: GCR; 1.90A {Escherichia coli} (N:141-244)
Probab=29.20  E-value=25  Score=12.89  Aligned_cols=69  Identities=23%  Similarity=0.202  Sum_probs=40.8

Q ss_pred             HHHHHCCCCCCHHHHHCC--CCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH--HHHHHHCCCCEEEEECCC
Q ss_conf             998743554211343213--662678988512681899617886622577788888--877753697306752578
Q gi|254780834|r  284 LSLCQAGVQNVVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL--VLCHLIPGNRVNFVLLSR  355 (648)
Q Consensus       284 i~l~~~G~~n~va~~Gta--lt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~--~l~~l~~g~~v~vv~LP~  355 (648)
                      -.+-.+|..|+.+..++.  .+.--...|..+-+.++|+.+.+.......+..-..  -++..+.|   +|..+|.
T Consensus        29 ~l~~~~G~~n~~~~~~~~~~~~~is~E~l~~~~pd~ii~~~~~~~~~~~~l~~~p~~~~l~Avk~~---~V~~i~~  101 (104)
T 1efd_N           29 EILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAG---RFQRVPA  101 (104)
T ss_dssp             HHHHHTTCCBSCCSCCCTTSEEEECGGGGGGCCSCEEEEECSSCHHHHHHHHTSHHHHHCHHHHTT---CEEEECC
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCC---CEEEECC
T ss_conf             999990992434123566787414899996549998999918974789999809402068620189---2899696


No 137
>>1svp_A Sindbis virus capsid protein; chymotrypsin-like serine, mutant, coat protein, viral protein; 2.00A {Sindbis virus} (A:73-161)
Probab=29.14  E-value=25  Score=12.82  Aligned_cols=12  Identities=42%  Similarity=0.808  Sum_probs=10.9

Q ss_pred             EEEECCCCEEEE
Q ss_conf             897077858885
Q gi|254780834|r  209 PIRSSRGQVIAF  220 (648)
Q Consensus       209 Pi~~~~g~~i~f  220 (648)
                      ||.|-+|+|||.
T Consensus        41 pi~DN~GkVVaI   52 (89)
T 1svp_A           41 PIMDNSGRVVAI   52 (89)
T ss_dssp             EEECTTSCEEEE
T ss_pred             CCCCCCCCEEEE
T ss_conf             117688879999


No 138
>>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} (A:178-264)
Probab=29.10  E-value=25  Score=12.82  Aligned_cols=12  Identities=42%  Similarity=0.808  Sum_probs=10.9

Q ss_pred             EEEECCCCEEEE
Q ss_conf             897077858885
Q gi|254780834|r  209 PIRSSRGQVIAF  220 (648)
Q Consensus       209 Pi~~~~g~~i~f  220 (648)
                      ||.|-+|+|||.
T Consensus        41 pi~DN~GrVVaI   52 (87)
T 1kxf_A           41 PIMDNSGRVVAI   52 (87)
T ss_dssp             EEECTTSCEEEE
T ss_pred             CCCCCCCCEEEE
T ss_conf             525688768999


No 139
>>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} (A:)
Probab=29.09  E-value=25  Score=12.82  Aligned_cols=44  Identities=23%  Similarity=0.245  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999998724127989999999999999999999884
Q gi|254780834|r  590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES  633 (648)
Q Consensus       590 ~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~~  633 (648)
                      .|-.++..++.-|.++.+.+.-|...-|-.-|++++.+..+.+.
T Consensus         6 PLlqQi~~Ik~yI~QAk~a~R~DEV~~Le~NLreLq~e~~~qq~   49 (51)
T 1yzm_A            6 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQT   49 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999999833428999999999999999999875


No 140
>>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens} (A:)
Probab=29.03  E-value=25  Score=12.81  Aligned_cols=40  Identities=5%  Similarity=0.088  Sum_probs=28.3

Q ss_pred             EEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHH-CCCC
Q ss_conf             46713-6888878-989989885999799999999981-8858
Q gi|254780834|r   61 FYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIA-GVPL  100 (648)
Q Consensus        61 ~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~-gi~~  100 (648)
                      .-||- |=|.+|- +.-++|...++++.+|++.+..+- ++.+
T Consensus        87 lVHC~~G~~RS~~vv~ayLm~~~~~~~~~A~~~v~~~Rp~~~~  129 (149)
T 1zzw_A           87 LIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPIISP  129 (149)
T ss_dssp             EEECSSSSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHCTTCCC
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
T ss_conf             6685555563599999999998497999999999998997799


No 141
>>3eol_A Isocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3e5b_A (A:349-433)
Probab=28.88  E-value=25  Score=12.79  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=19.1

Q ss_pred             EEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHH
Q ss_conf             9971438899987435542113432136626789
Q gi|254780834|r  275 ILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR  308 (648)
Q Consensus       275 i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~  308 (648)
                      .+==||+|.+.-.--|=..+++.||-+.|++|..
T Consensus        48 ~vGa~y~D~v~~~i~gG~Sst~Amg~stte~QF~   81 (85)
T 3eol_A           48 EVGTGYFDAVSLAITGGQSSTTAMKESTETAQFK   81 (85)
T ss_dssp             ----CHHHHHHHHHCC------------------
T ss_pred             HCCCCHHHHHHHHHCCCCHHHHHCCCCCCHHHCC
T ss_conf             1065588989998628830444236996566445


No 142
>>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 2.30A {Leishmania major} (A:)
Probab=28.83  E-value=26  Score=12.78  Aligned_cols=16  Identities=19%  Similarity=0.123  Sum_probs=6.8

Q ss_pred             EEECCCCEEEEECCCC
Q ss_conf             9707785888501001
Q gi|254780834|r  210 IRSSRGQVIAFGGRTL  225 (648)
Q Consensus       210 i~~~~g~~i~f~gR~l  225 (648)
                      |....|.++.|.-...
T Consensus        98 I~K~~~~~L~f~c~~~  113 (203)
T 1yqf_A           98 ITQKNGQTMQADLSIE  113 (203)
T ss_dssp             EECTTSCEEEEEEEEE
T ss_pred             EEECCCCEEEEEEEEC
T ss_conf             9968998799999964


No 143
>>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (I:54-122)
Probab=28.51  E-value=26  Score=12.74  Aligned_cols=29  Identities=24%  Similarity=0.541  Sum_probs=22.2

Q ss_pred             EECCCCCCCCCCEEEEC-------CCCEEEECCCCC
Q ss_conf             53458888587879817-------897467136888
Q gi|254780834|r   41 ACCPFHDEKTPSFHCND-------SKGFYYCFSCHV   69 (648)
Q Consensus        41 ~~cPfh~ektpsf~v~~-------~~~~~~cf~c~~   69 (648)
                      ..||-.....-.|...+       ..-||.|-.||.
T Consensus        20 ~~Cp~Cg~~ea~f~q~QtRsaDE~mT~Fy~C~~C~~   55 (69)
T 1twf_I           20 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSH   55 (69)
T ss_dssp             CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCC
T ss_pred             CCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCC
T ss_conf             678667998711687444667889739999699999


No 144
>>1ep5_B Capsid protein C, coat protein C; beta barrel, hydrolase; 2.30A {Venezuelan equine encephalitis virus} (B:71-157)
Probab=28.34  E-value=26  Score=12.72  Aligned_cols=12  Identities=42%  Similarity=0.841  Sum_probs=10.9

Q ss_pred             EEEECCCCEEEE
Q ss_conf             897077858885
Q gi|254780834|r  209 PIRSSRGQVIAF  220 (648)
Q Consensus       209 Pi~~~~g~~i~f  220 (648)
                      ||.|-+|+|||.
T Consensus        41 pi~DN~GrVVaI   52 (87)
T 1ep5_B           41 PILDNQGRVVAI   52 (87)
T ss_dssp             EEECTTSCEEEE
T ss_pred             CCCCCCCCEEEE
T ss_conf             117688869999


No 145
>>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} (A:1-24,A:153-262)
Probab=28.25  E-value=26  Score=12.70  Aligned_cols=23  Identities=13%  Similarity=0.232  Sum_probs=17.7

Q ss_pred             EEEECCCCEEEEECCCCCCCCCC
Q ss_conf             89707785888501001465530
Q gi|254780834|r  209 PIRSSRGQVIAFGGRTLSKGESV  231 (648)
Q Consensus       209 Pi~~~~g~~i~f~gR~l~~~~~~  231 (648)
                      |+.|..|+|||.....+..+..+
T Consensus        85 Pl~n~~GevVGI~~~~~~~~~~~  107 (134)
T 1ky9_A           85 ALVNLNGELIGINTAILAPDGGN  107 (134)
T ss_dssp             EEECTTSCEEEEEECSSTTSCCC
T ss_pred             EEEECCCEEEEEEEEEECCCCCC
T ss_conf             04945888977888777058886


No 146
>>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} (B:)
Probab=28.17  E-value=26  Score=12.69  Aligned_cols=43  Identities=23%  Similarity=0.239  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999872412798999999999999999999988
Q gi|254780834|r  590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE  632 (648)
Q Consensus       590 ~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~  632 (648)
                      .|-.++..++.-|.++...+.-|...-|-.-|++++.++.+.+
T Consensus        24 PLlqQi~~ik~yI~QAk~a~r~dEV~~Le~NLreLq~e~~~qq   66 (69)
T 1z0k_B           24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ   66 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             0999999999999999981441899999999999999999987


No 147
>>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single particle cryo-EM, high resolution, late protein, virion; 4.20A {Bovine papillomavirus type 1} (F:)
Probab=28.17  E-value=23  Score=13.12  Aligned_cols=11  Identities=27%  Similarity=0.338  Sum_probs=5.8

Q ss_pred             ECCCC--EEEECC
Q ss_conf             17897--467136
Q gi|254780834|r   56 NDSKG--FYYCFS   66 (648)
Q Consensus        56 ~~~~~--~~~cf~   66 (648)
                      +|++.  .|.|=|
T Consensus        88 nPe~eRLVW~l~G  100 (495)
T 3iyj_F           88 NPSKERLVWAVIG  100 (495)
T ss_dssp             CTTTEEEEEEEEE
T ss_pred             CCCCCEEEEEEEE
T ss_conf             9876567778888


No 148
>>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} (A:)
Probab=27.85  E-value=26  Score=12.65  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=17.2

Q ss_pred             EEEEEEEECCCCEEEEECCCCC
Q ss_conf             1688897077858885010014
Q gi|254780834|r  205 RLIFPIRSSRGQVIAFGGRTLS  226 (648)
Q Consensus       205 Ri~fPi~~~~g~~i~f~gR~l~  226 (648)
                      ++.-||+|..|+++|.-+-.++
T Consensus       103 ~~a~PI~~~~G~~iGvv~~~~~  124 (131)
T 1p0z_A          103 RGKSPIQDATGKVIGIVSVGYT  124 (131)
T ss_dssp             EEEEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEEECCCCCEEEEEEEEEE
T ss_conf             9999679799979999999988


No 149
>>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} (A:258-555)
Probab=27.68  E-value=27  Score=12.62  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=32.8

Q ss_pred             HHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEE-EEEECCC
Q ss_conf             38899987435542113432136626789885126818-9961788
Q gi|254780834|r  280 YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRI-VLCFDGD  324 (648)
Q Consensus       280 y~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~v-vl~fDgD  324 (648)
                      .-|++...+..+--.++..|-+||++.++.+.+.++++ ||.+=+=
T Consensus        95 l~e~v~~ikp~vlIG~S~~~g~fteevi~~Ma~~~~~PIIFaLSNP  140 (298)
T 1gq2_A           95 LEDIVKDIKPTVLIGVAAIGGAFTQQILQDXAAFNKRPIIFALSNP  140 (298)
T ss_dssp             HHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred             HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCC
T ss_conf             4567632487779951434687889999999840899889980797


No 150
>>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function, protease, thermophilic, SELF-compartmentalising, hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2pe3_A (A:1-74,A:170-354)
Probab=27.66  E-value=18  Score=14.18  Aligned_cols=40  Identities=20%  Similarity=0.040  Sum_probs=25.5

Q ss_pred             HHCCCCHHHHHHHHHCCCEEEEE-ECCCCCCHHHHHHHHHH
Q ss_conf             32136626789885126818996-17886622577788888
Q gi|254780834|r  298 LGTALTEYQLRLLWKLSPRIVLC-FDGDDPGLRAAYKAIDL  337 (648)
Q Consensus       298 ~Gtalt~~~~~~l~r~~~~vvl~-fDgD~AG~kAa~Ra~e~  337 (648)
                      .|+|.--+-++.|++.-..|+++ +|+-+-|...+...++.
T Consensus        93 sGva~lLe~ar~l~~~~~~i~fv~~~~EE~G~~Gs~~~~~~  133 (259)
T 2vpu_A           93 ICLYAMIEAARQLGDHEADIYIVGSVQEEVGLRGARVASYA  133 (259)
T ss_dssp             HHHHHHHHHHHHCCCCSSEEEEEECSCCTTTSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCC
T ss_conf             10667899999975223432001222157643113223445


No 151
>>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} (A:1-152)
Probab=27.65  E-value=27  Score=12.62  Aligned_cols=59  Identities=17%  Similarity=0.169  Sum_probs=35.2

Q ss_pred             HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf             678988512681899617886622577788888877753697306752578888889972
Q gi|254780834|r  305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR  364 (648)
Q Consensus       305 ~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir  364 (648)
                      ..++.+.+-++.||++-|.|.-|..=++-.++.+-.-......++=+.+ ....|.+..+
T Consensus        86 ~~lk~~~~~~d~iiiatD~DrEGE~I~~~i~~~~~~~~~~~~~v~R~~f-ssiT~~~I~~  144 (152)
T 1i7d_A           86 NVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQLAPEKRQQVQRCLI-NDLNPQAVER  144 (152)
T ss_dssp             HHHHHHHHHCSEEEEECCSSHHHHHHHHHHHHHTTCCHHHHHTCEECCC-SCCSHHHHHH
T ss_pred             HHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEE-CCCCHHHHHH
T ss_conf             9999998559989989899813419999999985623347885389996-1579999999


No 152
>>3fos_A Sensor protein; sensor histidine kinase domain, bacillus subtilis subsp. subtilis STR. 168, PSI-2, protein structure initiative; 2.48A {Bacillus subtilis subsp} (A:47-146)
Probab=27.65  E-value=27  Score=12.62  Aligned_cols=68  Identities=13%  Similarity=0.126  Sum_probs=37.7

Q ss_pred             HHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCE----EEEEEEECCCCEEE
Q ss_conf             98506885351012442256774103455420599734523201210034654100001671----68889707785888
Q gi|254780834|r  144 LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNR----LIFPIRSSRGQVIA  219 (648)
Q Consensus       144 l~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~R----i~fPi~~~~g~~i~  219 (648)
                      +...|.--..-..-..|+-+.++.+..+.+...+....              .-++++--+.    +-.||+|..|+++|
T Consensus        27 ~~~~G~~~~~~~~~~~~~d~~~r~wf~~a~~~~~~~is--------------~~~~~~~tg~~~i~~s~pi~d~~g~~~G   92 (100)
T 3fos_A           27 LNAKGDVTASTTELKTKVNLADRSFFIKAKETKKTVIS--------------DSYSSRITGQPIFTICVPVLDSKRNVTD   92 (100)
T ss_dssp             EETTCBEEEESSCCSSCCBCTTSHHHHHHHHHCSCEEC--------------CCEECTTTCSEEEEEEEEEECSSCCEEE
T ss_pred             ECCCCCEEECCCCCCCCCCHHHCHHHHHHHHCCCCCCC--------------CEEEECCCCCEEEEEEEEEECCCCCEEE
T ss_conf             95999789805766788893446367777633774213--------------3033046784589999867968997899


Q ss_pred             EECCCC
Q ss_conf             501001
Q gi|254780834|r  220 FGGRTL  225 (648)
Q Consensus       220 f~gR~l  225 (648)
                      +-+-.+
T Consensus        93 vv~~~i   98 (100)
T 3fos_A           93 YLVAAI   98 (100)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
T ss_conf             999996


No 153
>>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus} (A:)
Probab=27.60  E-value=27  Score=12.61  Aligned_cols=37  Identities=22%  Similarity=0.495  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHH-HCCCCCHHHHHHHHHCCCCHHHHCC
Q ss_conf             999999999997-3267775789999850688535101
Q gi|254780834|r  120 LIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEM  156 (648)
Q Consensus       120 ~~~~~~~~~~~~-l~~~~~~~a~~yl~~Rg~~~~~~~~  156 (648)
                      +.+-|..|-++- ..+..-..-+.||++.||+++-|+.
T Consensus        12 li~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~   49 (54)
T 3ff5_A           12 LIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDL   49 (54)
T ss_dssp             HHHHHHHHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHCCHHHCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf             99999999568212018689999999976999999999


No 154
>>2pfs_A USP, universal stress protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.25A {Nitrosomonas europaea atcc 19718} (A:)
Probab=27.46  E-value=27  Score=12.59  Aligned_cols=37  Identities=19%  Similarity=0.229  Sum_probs=29.9

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             6818996178866225777888888777536973067525
Q gi|254780834|r  314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL  353 (648)
Q Consensus       314 ~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~L  353 (648)
                      .++|.+++|++....+|...|+.++...   +-.+.++..
T Consensus         6 ~k~ILV~vd~s~~s~~al~~a~~~a~~~---~~~i~~lhv   42 (150)
T 2pfs_A            6 YHHILLAVDFSSEDSQVVQKVRNLASQI---GARLSLIHV   42 (150)
T ss_dssp             CSEEEEECCCCTTHHHHHHHHHHHHHHH---TCEEEEEEE
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHC---CCCEEEEEE
T ss_conf             9879999839989999999999999872---990688888


No 155
>>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} PDB: 1vkp_A* 2q3u_A* 3h7k_A* (X:163-296)
Probab=27.40  E-value=27  Score=12.59  Aligned_cols=72  Identities=15%  Similarity=0.121  Sum_probs=43.3

Q ss_pred             HHHHHCCCCCCHH-H---HHCCCCHHHHHHHHHCCC--EEEEEECCCCCCHHH-HHHHHHHHHHHH--HCCCCEEEEECC
Q ss_conf             9987435542113-4---321366267898851268--189961788662257-778888887775--369730675257
Q gi|254780834|r  284 LSLCQAGVQNVVS-S---LGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRA-AYKAIDLVLCHL--IPGNRVNFVLLS  354 (648)
Q Consensus       284 i~l~~~G~~n~va-~---~Gtalt~~~~~~l~r~~~--~vvl~fDgD~AG~kA-a~Ra~e~~l~~l--~~g~~v~vv~LP  354 (648)
                      .-....|++.++= +   .|.--|..|+--+-||+.  .|+++...|...-+. .+++..-.|...  ..|..++|+.||
T Consensus        36 ~L~~~LGv~kviWL~~G~~~dd~TdgHID~~arF~~~~~il~~~~~d~~d~~~~~~~~~~~~L~~~~da~G~~~~i~~lP  115 (134)
T 3h7c_X           36 ELKKYLGVQSFIWLPRGLYGDEDTNGHIDNXCCFARPGVVLLSWTDDETDPQYERSVEALSVLSNSIDARGRKIQVIKLY  115 (134)
T ss_dssp             HHHHHHCCCEEEEESCCCTTCGGGTCCGGGTEEEEETTEEEEEECCCTTSHHHHHHHHHHHHHHTCBCTTSCBCEEEEEE
T ss_pred             HHHHHHCCCEEEEECCCEECCCCCCCCCHHEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             99986297559997571207878765500048972898079874288768178999999999999987448853379712


Q ss_pred             C
Q ss_conf             8
Q gi|254780834|r  355 R  355 (648)
Q Consensus       355 ~  355 (648)
                      .
T Consensus       116 ~  116 (134)
T 3h7c_X          116 I  116 (134)
T ss_dssp             C
T ss_pred             C
T ss_conf             4


No 156
>>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A (A:165-334)
Probab=27.30  E-value=27  Score=12.57  Aligned_cols=18  Identities=17%  Similarity=0.196  Sum_probs=6.7

Q ss_pred             CHHHHHHCCCHHHHHHHH
Q ss_conf             888997203668899886
Q gi|254780834|r  358 DPDSFIRCYGKTAFEKLI  375 (648)
Q Consensus       358 DPDe~ir~~G~eaf~~ll  375 (648)
                      |||.-||..-.+.+..+.
T Consensus        22 D~~~~VR~~A~~~l~~i~   39 (170)
T 2iw3_A           22 DTKKEVKAAATAAXTKAT   39 (170)
T ss_dssp             CSSHHHHHHHHHHHHHHG
T ss_pred             CCCHHHHHHHHHHHHHHH
T ss_conf             697999999999999997


No 157
>>2be1_A Serine/threonine-protein kinase/endoribonuclease IRE1; transcription; 2.98A {Saccharomyces cerevisiae} (A:1-41,A:205-272)
Probab=26.94  E-value=27  Score=12.52  Aligned_cols=13  Identities=15%  Similarity=0.411  Sum_probs=5.2

Q ss_pred             CCCCCCCEEEEEE
Q ss_conf             0000167168889
Q gi|254780834|r  198 SYDRFRNRLIFPI  210 (648)
Q Consensus       198 ~~d~Fr~Ri~fPi  210 (648)
                      |+..|++|-+..|
T Consensus        52 yitPF~dkSLlAi   64 (109)
T 2be1_A           52 CIAPFRDKSLLAS   64 (109)
T ss_dssp             CEEEETTTEEEEE
T ss_pred             EEEECCCCEEEEE
T ss_conf             0641589849999


No 158
>>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Lactobacillus salivarius UCC118} (A:65-109)
Probab=26.89  E-value=27  Score=12.52  Aligned_cols=35  Identities=17%  Similarity=0.354  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHH-CCCCCHHHHHH-HHHCCCCHHHHCC
Q ss_conf             99999999973-26777578999-9850688535101
Q gi|254780834|r  122 EVATDFFHHSL-KNARDKRLHYY-LDERGIDSHAIEM  156 (648)
Q Consensus       122 ~~~~~~~~~~l-~~~~~~~a~~y-l~~Rg~~~~~~~~  156 (648)
                      +.|..|-+... ..+.|+..... |..+|+++++|+.
T Consensus         5 ~fA~~~vr~r~~~~~~Gp~~IrqeL~qKGI~~~~I~~   41 (45)
T 3e3v_A            5 NYAESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIAED   41 (45)
T ss_dssp             HHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHH
T ss_conf             9999999999870254089999999986999999999


No 159
>>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae} (A:)
Probab=26.46  E-value=28  Score=12.45  Aligned_cols=30  Identities=23%  Similarity=0.373  Sum_probs=21.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHCCCHHHHHHH
Q ss_conf             973067525788888899720366889988
Q gi|254780834|r  345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKL  374 (648)
Q Consensus       345 g~~v~vv~LP~G~DPDe~ir~~G~eaf~~l  374 (648)
                      |---.+|.||+|+|-.+|+-.+-.+-|.++
T Consensus        61 ~~l~~~V~lP~g~D~neWlA~~~~~ff~~i   90 (236)
T 2hjn_A           61 GVLNQAVKLPRGEDENEWLAVHCVDFYNQI   90 (236)
T ss_dssp             GC---CCSCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             679999269299870411899899999999


No 160
>>1ep5_B Capsid protein C, coat protein C; beta barrel, hydrolase; 2.30A {Venezuelan equine encephalitis virus} (B:1-70)
Probab=26.02  E-value=28  Score=12.39  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=16.1

Q ss_pred             EEEEEEECCCCEEE----EECCCCCCC
Q ss_conf             68889707785888----501001465
Q gi|254780834|r  206 LIFPIRSSRGQVIA----FGGRTLSKG  228 (648)
Q Consensus       206 i~fPi~~~~g~~i~----f~gR~l~~~  228 (648)
                      -+|||.+ .|+|+|    .|||++.+-
T Consensus         8 ~~F~v~~-dG~v~GyA~~vggkv~KPl   33 (70)
T 1ep5_B            8 KTFPIML-EGKINGYACVVGGKLFRPM   33 (70)
T ss_dssp             CEEEEEE-TTEEEEEEEEETTEEEEET
T ss_pred             CEEEEEE-CCEEEEEEEEECCEEECCC
T ss_conf             4645676-4614578999747530232


No 161
>>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=26.01  E-value=15  Score=14.83  Aligned_cols=15  Identities=33%  Similarity=0.766  Sum_probs=9.1

Q ss_pred             EEEECCCCCCCCHHH
Q ss_conf             467136888878989
Q gi|254780834|r   61 FYYCFSCHVKGDHLS   75 (648)
Q Consensus        61 ~~~cf~c~~~gd~~~   75 (648)
                      -|-||-||..|-.|+
T Consensus         7 ~YiC~rCg~~GH~Ik   21 (55)
T 2ysa_A            7 GYTCFRCGKPGHYIK   21 (55)
T ss_dssp             SCCCTTTCCTTSCGG
T ss_pred             CCEEECCCCCCCCCE
T ss_conf             878756899881046


No 162
>>2q1f_A Chondroitinase; alpha plus beta, lyase; 2.85A {Bacteroides thetaiotaomicron} (A:1-190)
Probab=25.77  E-value=19  Score=14.03  Aligned_cols=67  Identities=16%  Similarity=0.248  Sum_probs=31.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHC--CCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEE-ECCCCEEEEECCCCCCCCCCE
Q ss_conf             12442256774103455420--599734523201210034654100001671688897-077858885010014655300
Q gi|254780834|r  156 MFKLGYAPDSRYSLREHLRQ--KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIR-SSRGQVIAFGGRTLSKGESVK  232 (648)
Q Consensus       156 ~f~lG~ap~~~~~l~~~l~~--~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~-~~~g~~i~f~gR~l~~~~~~K  232 (648)
                      .|+|.|.  +|..-.--...  .|-..+.+.+--+..+...|.    .|-||||||+. |.         |.-.+|...=
T Consensus       117 ~~~LnF~--GWRa~wV~y~~dm~g~~~~g~~~~ri~AP~~~G~----lflD~l~~~~~vd~---------r~~t~D~QvP  181 (190)
T 2q1f_A          117 PFGINFK--GWRAAWVCYERDXQGTPEEGXNELRIVAPDAKGR----LFIDHLITATKVDA---------RQQTADLQVP  181 (190)
T ss_dssp             EEECCCS--EEEEEEEETTTTSEECCCTTCCEEEEECCSSCEE----EEEEEEEEEEEECT---------TCBCCCSSCT
T ss_pred             EEEEECC--HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC----EEEEEEEECCCCCC---------CCCCCCCCCC
T ss_conf             8877342--1767665467760799768823899974588982----89999980355445---------6578643366


Q ss_pred             ECCCC
Q ss_conf             10387
Q gi|254780834|r  233 YLNSP  237 (648)
Q Consensus       233 YlNSp  237 (648)
                      |+|+.
T Consensus       182 fvN~~  186 (190)
T 2q1f_A          182 FVNAG  186 (190)
T ss_dssp             TTTTT
T ss_pred             CCCCC
T ss_conf             66755


No 163
>>1jmu_B Protein MU-1; protein-protein complex, jelly roll, zinc finger, viral protein; HET: BOG; 2.80A {Reovirus SP} (B:1-145)
Probab=25.42  E-value=26  Score=12.76  Aligned_cols=16  Identities=19%  Similarity=0.121  Sum_probs=11.8

Q ss_pred             HHHHHHHCCCCHHHHC
Q ss_conf             8999985068853510
Q gi|254780834|r  140 LHYYLDERGIDSHAIE  155 (648)
Q Consensus       140 a~~yl~~Rg~~~~~~~  155 (648)
                      -|+||..||+++++.+
T Consensus        79 dR~yLda~gv~~~s~~   94 (145)
T 1jmu_B           79 NREFLDKLRVLSVSPK   94 (145)
T ss_dssp             THHHHHHTTCCCSCCC
T ss_pred             HHHHHHCCCCCCCCCE
T ss_conf             0776630376766532


No 164
>>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus bulgaricus, transferase; 1.85A {Lactobacillus delbrueckii subsp} (A:1-131,A:253-303)
Probab=25.42  E-value=29  Score=12.30  Aligned_cols=15  Identities=20%  Similarity=0.377  Sum_probs=5.8

Q ss_pred             CEECCCCCCCCCCCC
Q ss_conf             001038767653521
Q gi|254780834|r  231 VKYLNSPETILFHKG  245 (648)
Q Consensus       231 ~KYlNSpeT~if~K~  245 (648)
                      ..++|++-|.+-.-+
T Consensus        58 ~~i~~~GGtiLgtsR   72 (182)
T 1zxx_A           58 AHLINVSGTFLYSAR   72 (182)
T ss_dssp             TTCTTCCSCTTCCCC
T ss_pred             HHHHHCCCCCCCCCC
T ss_conf             767733774013577


No 165
>>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} (A:)
Probab=25.12  E-value=29  Score=12.26  Aligned_cols=28  Identities=11%  Similarity=-0.001  Sum_probs=10.4

Q ss_pred             CCCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             8888789899898859997999999999
Q gi|254780834|r   67 CHVKGDHLSFLSALLGCSFIESVQRLAA   94 (648)
Q Consensus        67 c~~~gd~~~f~~~~~~~~f~ea~~~la~   94 (648)
                      +|.+|-++--++-..+++..||+..+.+
T Consensus       107 ~~RSg~~~~aylm~~~~~~~~A~~~vr~  134 (159)
T 1rxd_A          107 LGRAPVLVALALIEGGXKYEDAVQFIRQ  134 (159)
T ss_dssp             STTHHHHHHHHHHHTTCCHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             8746999999999919799999999997


No 166
>>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens} (A:)
Probab=25.04  E-value=15  Score=14.78  Aligned_cols=16  Identities=19%  Similarity=0.368  Sum_probs=9.4

Q ss_pred             HHHHCCCCCCHHHHHCC
Q ss_conf             98743554211343213
Q gi|254780834|r  285 SLCQAGVQNVVSSLGTA  301 (648)
Q Consensus       285 ~l~~~G~~n~va~~Gta  301 (648)
                      .++..|++ ..||.||+
T Consensus        45 ~l~~~G~~-i~AT~gT~   60 (143)
T 2yvq_A           45 QLHNEGFK-LFATEATS   60 (143)
T ss_dssp             HHHTTTCE-EEEEHHHH
T ss_pred             HHHHCCEE-EEECHHHH
T ss_conf             99750714-67438989


No 167
>>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} PDB: 1xm0_A (A:14-144)
Probab=24.66  E-value=30  Score=12.20  Aligned_cols=12  Identities=8%  Similarity=0.066  Sum_probs=4.3

Q ss_pred             CCHHHHCCCCCC
Q ss_conf             885351012442
Q gi|254780834|r  149 IDSHAIEMFKLG  160 (648)
Q Consensus       149 ~~~~~~~~f~lG  160 (648)
                      ++.+-...+.-|
T Consensus        17 ftg~y~~~~~~G   28 (131)
T 3e0o_A           17 FQNEYWDHKEEG   28 (131)
T ss_dssp             TCSTTSSCCCSE
T ss_pred             CCCCCCCCCCCE
T ss_conf             987776788886


No 168
>>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} (A:)
Probab=24.56  E-value=30  Score=12.18  Aligned_cols=37  Identities=32%  Similarity=0.362  Sum_probs=29.7

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             6818996178866225777888888777536973067525
Q gi|254780834|r  314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL  353 (648)
Q Consensus       314 ~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~L  353 (648)
                      -++|.+++|+...+++|...+++++...   +-.+.++..
T Consensus         2 ~~~iLv~vd~s~~~~~al~~a~~la~~~---~~~i~ll~V   38 (137)
T 2z08_A            2 FKTILLAYDGSEHARRAAEVAKAEAEAH---GARLIVVHA   38 (137)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHHHHHHHH---TCEEEEEEE
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHC---CCEEEEEEE
T ss_conf             9839999889989999999999999875---999999987


No 169
>>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-fuoric acid, oxidoreductase; HET: FAD; 1.30A {Bacillus SP} (A:1-87,A:144-217,A:323-389)
Probab=24.37  E-value=19  Score=14.06  Aligned_cols=20  Identities=20%  Similarity=0.481  Sum_probs=9.7

Q ss_pred             HHHHHHHCCCCHHHHCCCCC
Q ss_conf             89999850688535101244
Q gi|254780834|r  140 LHYYLDERGIDSHAIEMFKL  159 (648)
Q Consensus       140 a~~yl~~Rg~~~~~~~~f~l  159 (648)
                      |-.+|.++|++--++++-..
T Consensus        18 aA~~la~~G~~v~vie~~~~   37 (228)
T 2gf3_A           18 AGYQLAKQGVKTLLVDAFDP   37 (228)
T ss_dssp             HHHHHHHTTCCEEEECSSCS
T ss_pred             HHHHHHHCCCCEEEEECCCC
T ss_conf             99999978995899955899


No 170
>>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.97A {Archaeoglobus fulgidus} (A:)
Probab=24.26  E-value=30  Score=12.14  Aligned_cols=38  Identities=21%  Similarity=0.075  Sum_probs=25.9

Q ss_pred             CCEEEEEECCCC-CCHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             681899617886-62257778888887775369730675257
Q gi|254780834|r  314 SPRIVLCFDGDD-PGLRAAYKAIDLVLCHLIPGNRVNFVLLS  354 (648)
Q Consensus       314 ~~~vvl~fDgD~-AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP  354 (648)
                      ..+|+++.|++. ..++|...++.++...   |-.+.++..-
T Consensus        24 ~~~ilv~vd~~s~~s~~~l~~a~~la~~~---~~~l~~l~v~   62 (155)
T 3dlo_A           24 YXPIVVAVDKKSDRAERVLRFAAEEARLR---GVPVYVVHSL   62 (155)
T ss_dssp             CCCEEEECCSSSHHHHHHHHHHHHHHHHH---TCCEEEEEEE
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHC---CCEEEEEEEE
T ss_conf             51589998797988999999999999865---9949999986


No 171
>>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP} (A:)
Probab=24.16  E-value=30  Score=12.12  Aligned_cols=39  Identities=13%  Similarity=0.032  Sum_probs=29.6

Q ss_pred             HCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHH
Q ss_conf             506885351012442256774103455420599734523
Q gi|254780834|r  146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII  184 (648)
Q Consensus       146 ~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~  184 (648)
                      .=|++..++.++.-|-..++++.|...+.--|++.+.+.
T Consensus        33 ~~gvs~~~i~~~e~G~~~p~~~~l~~ia~~~~v~~~~l~   71 (82)
T 3clc_A           33 KSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFF   71 (82)
T ss_dssp             HHTSCHHHHHHHHTTCCCCBHHHHHHHHHHHTCCHHHHH
T ss_pred             CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf             557479899999769999999999999999698999997


No 172
>>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum} (A:1-14,A:56-118)
Probab=23.86  E-value=30  Score=12.08  Aligned_cols=21  Identities=14%  Similarity=-0.010  Sum_probs=17.2

Q ss_pred             EEEEEEECCCCEEEEECCCCC
Q ss_conf             688897077858885010014
Q gi|254780834|r  206 LIFPIRSSRGQVIAFGGRTLS  226 (648)
Q Consensus       206 i~fPi~~~~g~~i~f~gR~l~  226 (648)
                      ...||+|..|++++|-|-..|
T Consensus        55 ~~~pi~d~~G~i~~~iGi~~D   75 (77)
T 3icy_A           55 HXRSSFSDDGLFSGIDGILCE   75 (77)
T ss_dssp             EEEEEECTTSCEEEEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEEEEE
T ss_conf             999999999799999999997


No 173
>>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed oxyanion HOLE; 2.00A {Equine arteritis virus} (A:1-149)
Probab=23.77  E-value=31  Score=12.06  Aligned_cols=14  Identities=7%  Similarity=0.152  Sum_probs=8.1

Q ss_pred             CCEEEECC-CCCCCC
Q ss_conf             97467136-888878
Q gi|254780834|r   59 KGFYYCFS-CHVKGD   72 (648)
Q Consensus        59 ~~~~~cf~-c~~~gd   72 (648)
                      +++..||. ||.+|.
T Consensus       102 ~~~afcfT~cGDSGS  116 (149)
T 1mbm_A          102 GEVCLAWTTSGDSGS  116 (149)
T ss_dssp             SSCEECCCCGGGTTC
T ss_pred             CCEEEEECCCCCCCC
T ss_conf             854899815788899


No 174
>>1ev0_A MINE; topological specificity, cell division, mincd, minicell, cell cycle; NMR {Escherichia coli} (A:)
Probab=23.58  E-value=25  Score=12.84  Aligned_cols=25  Identities=24%  Similarity=0.385  Sum_probs=15.8

Q ss_pred             CHHHHHHHHHHCCHHHHHHHHCCCEEC
Q ss_conf             888999998748888875412221015
Q gi|254780834|r    4 PRDFIKDLLIHIPISNLIGQYVDWDRR   30 (648)
Q Consensus         4 ~~~~i~~i~~~~~i~~vv~~~v~l~~~   30 (648)
                      .++++..++.  +|.+||+.||+....
T Consensus         5 ~pdyLp~L~~--Eil~VI~KyV~Id~d   29 (58)
T 1ev0_A            5 EPHYLPQLRK--DILEVICKYVQIDPE   29 (58)
T ss_dssp             TTSSHHHHHH--HHHHHHHHHSCCCGG
T ss_pred             CCHHHHHHHH--HHHHHHHHHEEECHH
T ss_conf             8156999999--999999875885468


No 175
>>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli} (A:62-108)
Probab=23.49  E-value=31  Score=12.02  Aligned_cols=34  Identities=18%  Similarity=0.240  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHCCCCCHHHHHH-HHHCCCCHHHHCC
Q ss_conf             999999997326777578999-9850688535101
Q gi|254780834|r  123 VATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEM  156 (648)
Q Consensus       123 ~~~~~~~~~l~~~~~~~a~~y-l~~Rg~~~~~~~~  156 (648)
                      .|..|-+..+....|+..... |..+|++.+.|+.
T Consensus         6 yae~~vr~~~~kg~G~~rI~qeL~qKGi~~~~Ie~   40 (47)
T 3c1d_A            6 FVARFIASRSRKGYGPARIRQELNQKGISREATEK   40 (47)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHH
T ss_conf             99999998750798789999999998088999999


No 176
>>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} (A:127-203)
Probab=23.11  E-value=31  Score=11.96  Aligned_cols=18  Identities=17%  Similarity=0.495  Sum_probs=14.6

Q ss_pred             EEEEEEECCCCEEEEECC
Q ss_conf             688897077858885010
Q gi|254780834|r  206 LIFPIRSSRGQVIAFGGR  223 (648)
Q Consensus       206 i~fPi~~~~g~~i~f~gR  223 (648)
                      -.|||-|..|+++|+--+
T Consensus        32 ~~~pVvd~~g~lvGivt~   49 (77)
T 2yzq_A           32 MALPVVDSEGNLVGIVDE   49 (77)
T ss_dssp             SEEEEECTTSCEEEEEEG
T ss_pred             CCCCCCCCCCEEEEEEEH
T ss_conf             221134677438999889


No 177
>>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomics, protein structure initiative; 2.35A {Lactobacillus reuteri 100-23} (A:108-152)
Probab=23.09  E-value=31  Score=11.96  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHC-CCCCHHHHHH-HHHCCCCHHHHCC
Q ss_conf             999999999732-6777578999-9850688535101
Q gi|254780834|r  122 EVATDFFHHSLK-NARDKRLHYY-LDERGIDSHAIEM  156 (648)
Q Consensus       122 ~~~~~~~~~~l~-~~~~~~a~~y-l~~Rg~~~~~~~~  156 (648)
                      ..|..|-..... +..|+..... |..+|++.++|..
T Consensus         5 ~fA~~~v~~r~~~~~~Gp~~I~qeL~qKGI~~~iIe~   41 (45)
T 3d5l_A            5 AYAASYVRTMINTDLKGPGIIRQHLRQKGIGESDIDD   41 (45)
T ss_dssp             HHHHHHHHHHHHHCCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHH
T ss_conf             9999999986012660599999999986999999999


No 178
>>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis H37RV} (A:1-128)
Probab=23.02  E-value=31  Score=11.95  Aligned_cols=41  Identities=17%  Similarity=0.152  Sum_probs=27.1

Q ss_pred             HCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             12681899617886622577788888877753697306752578
Q gi|254780834|r  312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR  355 (648)
Q Consensus       312 r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~  355 (648)
                      ...++|+++.|+.+.-++|...|+.++.+.   +..+-+...+.
T Consensus        15 ~~~~~ILvavD~S~~s~~al~~a~~la~~~---~~~~~l~~v~~   55 (128)
T 1tq8_A           15 SAYKTVVVGTDGSDSSXRAVDRAAQIAGAD---AKLIIASAYLP   55 (128)
T ss_dssp             CCCCEEEEECCSSHHHHHHHHHHHHHHTTT---SEEEEEEECCC
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHHHCC---CCEEEEEEEEC
T ss_conf             589969999899989999999999998548---98799999961


No 179
>>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} (A:261-452)
Probab=22.98  E-value=11  Score=16.19  Aligned_cols=76  Identities=13%  Similarity=0.056  Sum_probs=44.2

Q ss_pred             HHHHH---HCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCE
Q ss_conf             99998---506885351012442256774103455420599734523201210034654100001671688897077858
Q gi|254780834|r  141 HYYLD---ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV  217 (648)
Q Consensus       141 ~~yl~---~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~  217 (648)
                      .+||.   .+.++...+.++-++-|    .+ ..||.++|+=--+|.-+.++...+......|....+++.+..+..+..
T Consensus         6 ~~~l~~~~~~~l~~~~~~~i~~qia----~g-L~yLHs~~iiHrDlKp~NILl~~~~~~~i~Dfg~~~~~~~~~~~~~~~   80 (192)
T 1fmk_A            6 LDFLKGETGKYLRLPQLVDMAAQIA----SG-MAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQG   80 (192)
T ss_dssp             HHHHSHHHHTTCCHHHHHHHHHHHH----HH-HHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC------------
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHH----HH-HHHHHHCCCCCCCCCCCEEEECCCCCEEEECCCHHEECCCCCCEEECC
T ss_conf             9998644588899999999999999----99-999986898678745221899799977980241012236887302101


Q ss_pred             EEEE
Q ss_conf             8850
Q gi|254780834|r  218 IAFG  221 (648)
Q Consensus       218 i~f~  221 (648)
                      ...+
T Consensus        81 ~~~~   84 (192)
T 1fmk_A           81 AKFP   84 (192)
T ss_dssp             --CC
T ss_pred             CCCC
T ss_conf             4777


No 180
>>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} (A:157-289)
Probab=22.78  E-value=32  Score=11.91  Aligned_cols=72  Identities=15%  Similarity=0.037  Sum_probs=42.5

Q ss_pred             HHHHHCCCCCCHH-HHH--CCCCHHHHHHHHHCCC--EEEEEECCCCCCHH--HHHHHHHHHHHHH-HCCCCEEEEECCC
Q ss_conf             9987435542113-432--1366267898851268--18996178866225--7778888887775-3697306752578
Q gi|254780834|r  284 LSLCQAGVQNVVS-SLG--TALTEYQLRLLWKLSP--RIVLCFDGDDPGLR--AAYKAIDLVLCHL-IPGNRVNFVLLSR  355 (648)
Q Consensus       284 i~l~~~G~~n~va-~~G--talt~~~~~~l~r~~~--~vvl~fDgD~AG~k--Aa~Ra~e~~l~~l-~~g~~v~vv~LP~  355 (648)
                      .-....|+++++= +-|  ---|..|+-.+-||+.  .|+++...|...-+  +.....+.+.... ..|...+|+.||.
T Consensus        37 ~l~~~LG~~~viWl~~~~~~D~TdgHiD~~arF~~~~~il~~~~~d~~d~~~~~~~~~~~~L~~~~da~G~~~~i~~lP~  116 (133)
T 2jer_A           37 KLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCC  116 (133)
T ss_dssp             HHHHHHTCSEEEEECCCSCTTTTSSCGGGTEEEEETTEEEEECCCCTTSTTHHHHHHHHHHHHTCBCTTCCBCEEEEECC
T ss_pred             HHHHHHCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             99886498079986587667667777544479947995699833898883578999999999765653489865897158


No 181
>>2k4q_A Major tail protein V; GPV, bacteriophage lambda, viral protein; NMR {Enterobacteria phage lambda} (A:)
Probab=22.69  E-value=32  Score=11.90  Aligned_cols=36  Identities=11%  Similarity=0.134  Sum_probs=23.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             189961788662257778888887775369730675257888
Q gi|254780834|r  316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE  357 (648)
Q Consensus       316 ~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~  357 (648)
                      .+.+.||.+.||+.|..-+.+-     ..-..+| +.+|+|.
T Consensus        84 s~~~~~d~~~~~~~aL~~a~~s-----~~~~~~k-i~~pdg~  119 (156)
T 2k4q_A           84 SFTLAWMPGEQGQQALLAWFNE-----GDTRAYK-IRFPNGT  119 (156)
T ss_dssp             EEEEEECTTCCCHHHHHHHHHH-----TCCEEEE-EECTTSC
T ss_pred             EEEEEECCCCHHHHHHHHHHHC-----CCEEEEE-EECCCCC
T ss_conf             9998748885789999999868-----9969999-9868998


No 182
>>1yzy_A Hypothetical protein HI1011; putative tRNA synthase, structural genomics, PSI, protein structure initiative; 2.10A {Haemophilus influenzae} (A:)
Probab=22.64  E-value=32  Score=11.89  Aligned_cols=16  Identities=31%  Similarity=0.443  Sum_probs=11.0

Q ss_pred             EEEEEEECCCCEEEEE
Q ss_conf             6888970778588850
Q gi|254780834|r  206 LIFPIRSSRGQVIAFG  221 (648)
Q Consensus       206 i~fPi~~~~g~~i~f~  221 (648)
                      ++.|-+=..||++-+|
T Consensus       110 ~v~PAfP~~GR~t~~G  125 (413)
T 1yzy_A          110 VITPALPVNGRTIFNG  125 (413)
T ss_dssp             EECCCBGGGTEEEETT
T ss_pred             EEECCCCCCCCEEECC
T ss_conf             9965656788389877


No 183
>>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} (A:1-89,A:257-335)
Probab=22.46  E-value=32  Score=11.86  Aligned_cols=34  Identities=15%  Similarity=0.267  Sum_probs=24.3

Q ss_pred             HCCCCCHHHHHHHHHCCCCHHHHCCC--CCCCCCCC
Q ss_conf             32677757899998506885351012--44225677
Q gi|254780834|r  132 LKNARDKRLHYYLDERGIDSHAIEMF--KLGYAPDS  165 (648)
Q Consensus       132 l~~~~~~~a~~yl~~Rg~~~~~~~~f--~lG~ap~~  165 (648)
                      |....|.....++++.|+-++.+-.|  .||+++.+
T Consensus        91 LSKR~g~~si~~~re~G~~PeAl~nyLa~LG~s~~~  126 (168)
T 2ja2_A           91 LSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSIAD  126 (168)
T ss_dssp             CCTTSGGGBHHHHHHHTCCHHHHHHHHHTSSCCSCS
T ss_pred             CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCC
T ss_conf             344578623677997598889999999985778788


No 184
>>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural proteomics in europe, spine, structural genomics, ligand transport; NMR {Staphylococcus aureus} (A:)
Probab=22.36  E-value=32  Score=11.85  Aligned_cols=62  Identities=16%  Similarity=0.279  Sum_probs=42.7

Q ss_pred             HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHH
Q ss_conf             789885126818996178866225777888888777536973067525788888899720366889988641
Q gi|254780834|r  306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE  377 (648)
Q Consensus       306 ~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~  377 (648)
                      =++...+|...|.+-+||-.+--+-.+..+-+   -+..|-.+.+..  +|.|-++.+     +++.+++++
T Consensus        22 lv~~a~~~~~~I~i~~~~~~~~akSil~ll~L---~~~~G~~i~i~~--~G~De~~Al-----~~l~~~l~~   83 (88)
T 1ka5_A           22 LVQTASKFDSDIQLEYNGKKVNLKSIMGVMSL---GVGKDAEITIYA--DGSDESDAI-----QAISDVLSK   83 (88)
T ss_dssp             HHHHHHHHSSEEEEEETTEEEETTCHHHHHTT---TCCTTCEEEEEE--ESSSHHHHH-----HHHHHHHHH
T ss_pred             HHHHHHHCCCEEEEEECCEEEECHHHHHHHHC---CCCCCCEEEEEE--ECCCHHHHH-----HHHHHHHHH
T ss_conf             99999758998999989999852829999855---999989999999--786899999-----999999986


No 185
>>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, structural genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV} (A:1-24,A:113-251)
Probab=22.14  E-value=33  Score=11.81  Aligned_cols=61  Identities=18%  Similarity=0.269  Sum_probs=32.3

Q ss_pred             EEECCHHHHHHHHHCCCCCCHHHHHCCC-CHHHHHH--HHHCCCEEEEEECCCCCCHHHHHHHH
Q ss_conf             9971438899987435542113432136-6267898--85126818996178866225777888
Q gi|254780834|r  275 ILVEGYMDVLSLCQAGVQNVVSSLGTAL-TEYQLRL--LWKLSPRIVLCFDGDDPGLRAAYKAI  335 (648)
Q Consensus       275 i~vEGy~Dvi~l~~~G~~n~va~~Gtal-t~~~~~~--l~r~~~~vvl~fDgD~AG~kAa~Ra~  335 (648)
                      ++..|-.+++..-..|++-+|.|.|+.- -+.-++.  |..|.+.|+.+...|.+-...+++.+
T Consensus        24 ~l~pgv~e~L~~Lk~~~~l~IvSn~~~~~~~~~l~~~gl~~~Fd~i~~~~KP~p~~~~~~l~~l   87 (163)
T 2pke_A           24 LVIAGVREAVAAIAADYAVVLITKGDLFHQEQKIEQSGLSDLFPRIEVVSEKDPQTYARVLSEF   87 (163)
T ss_dssp             TBCTTHHHHHHHHHTTSEEEEEEESCHHHHHHHHHHHSGGGTCCCEEEESCCSHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             6785699986332110220014578678788888875311211211002577548999988760


No 186
>>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} (A:1-99,A:163-229,A:321-382)
Probab=22.10  E-value=25  Score=12.86  Aligned_cols=17  Identities=18%  Similarity=0.276  Sum_probs=6.8

Q ss_pred             HHHHCCCCHHHHCCCCC
Q ss_conf             99850688535101244
Q gi|254780834|r  143 YLDERGIDSHAIEMFKL  159 (648)
Q Consensus       143 yl~~Rg~~~~~~~~f~l  159 (648)
                      +|.++|++--++++-..
T Consensus        35 ~La~~G~~V~iiE~~~~   51 (228)
T 1ryi_A           35 YLAKENKNTALFESGTM   51 (228)
T ss_dssp             HHHHTTCCEEEECSSST
T ss_pred             HHHHCCCCEEEEECCCC
T ss_conf             99988995899959999


No 187
>>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* (A:)
Probab=22.07  E-value=33  Score=11.80  Aligned_cols=78  Identities=9%  Similarity=0.095  Sum_probs=53.0

Q ss_pred             HHHCCCCCCHHHHHCCCCHHHHHHHHHC-CCEEEEEECCCCCCHHHHHH------HHHHHHHHHHCCCC--EEEEECCC-
Q ss_conf             8743554211343213662678988512-68189961788662257778------88888777536973--06752578-
Q gi|254780834|r  286 LCQAGVQNVVSSLGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYK------AIDLVLCHLIPGNR--VNFVLLSR-  355 (648)
Q Consensus       286 l~~~G~~n~va~~Gtalt~~~~~~l~r~-~~~vvl~fDgD~AG~kAa~R------a~e~~l~~l~~g~~--v~vv~LP~-  355 (648)
                      +...|+...+-+.|+.++.+.+..+... ...+.+.+|+...-.....+      .++.+..+...|..  +..+.+|. 
T Consensus        94 ~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~  173 (245)
T 3c8f_A           94 CKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGW  173 (245)
T ss_dssp             HHTTTCCEEEEECCCCCCCCHHHHHHHHTCSEEEEECCCSSHHHHHHHHSSCSHHHHHHHHHHHHHTCCEEEEEEECTTT
T ss_pred             HHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             88635714661377311445556542133210114500100678887627332666766545422555137766323898


Q ss_pred             CCCHHHHH
Q ss_conf             88888997
Q gi|254780834|r  356 GEDPDSFI  363 (648)
Q Consensus       356 G~DPDe~i  363 (648)
                      +.+++++.
T Consensus       174 ~~~~~~~~  181 (245)
T 3c8f_A          174 SDDDDSAH  181 (245)
T ss_dssp             TCCHHHHH
T ss_pred             CCCHHHHH
T ss_conf             89999999


No 188
>>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HUPR1; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B (A:)
Probab=21.98  E-value=33  Score=11.79  Aligned_cols=99  Identities=13%  Similarity=0.203  Sum_probs=52.4

Q ss_pred             EEEEECCHHHHHHHH----HCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             089971438899987----4355421134321366267898851268189961788662257778888887775369730
Q gi|254780834|r  273 FIILVEGYMDVLSLC----QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV  348 (648)
Q Consensus       273 ~~i~vEGy~Dvi~l~----~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v  348 (648)
                      .++|||.-.+...+.    ..|+.-.+|..|    .+-+..+.+....++++ |-.=.|..    +++++-.+.+.+..+
T Consensus         3 ~ILiVDD~~~~~~~l~~~l~~g~~v~~a~~~----~~al~~l~~~~~dlill-D~~lP~~~----G~ell~~lr~~~~~~   73 (139)
T 2jk1_A            3 AILLVDDEPHSLAAMKLALEDDFDVLTAQGA----EAAIAILEEEWVQVIIC-DQRMPGRT----GVDFLTEVRERWPET   73 (139)
T ss_dssp             EEEEECSSHHHHHHHHHHHTTTSCEEEESSH----HHHHHHHHHSCEEEEEE-ESCCSSSC----HHHHHHHHHHHCTTS
T ss_pred             EEEEEECCHHHHHHHHHHHHCCCEEEEECCH----HHHHHHHHHCCCCEEEE-ECCCCCCC----HHHHHHHHHHCCCCC
T ss_conf             8999969899999999999879999996549----99999998378988996-34454243----899999999718999


Q ss_pred             EEEECCCCCCHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf             67525788888899720366889988641499
Q gi|254780834|r  349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP  380 (648)
Q Consensus       349 ~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~  380 (648)
                      .|+.+....|.++.++.-..-+...++.+...
T Consensus        74 pvI~lt~~~~~~~~~~~~~~~Ga~dyl~KP~~  105 (139)
T 2jk1_A           74 VRIIITGYTDSASMMAAINDAGIHQFLTKPWH  105 (139)
T ss_dssp             EEEEEESCTTCHHHHHHHHHTTCCEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHCCCCEEEECCCC
T ss_conf             68989897998999999997599718869899


No 189
>>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} (A:133-268)
Probab=21.97  E-value=33  Score=11.79  Aligned_cols=90  Identities=14%  Similarity=0.101  Sum_probs=44.6

Q ss_pred             CEEEECCCCCCC-CHHHHHHHHCCCCHHHHHHHHHHHHCCCC------CCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf             746713688887-89899898859997999999999818858------7768203677788999-999999999999997
Q gi|254780834|r   60 GFYYCFSCHVKG-DHLSFLSALLGCSFIESVQRLAAIAGVPL------PVVDPKIEKKEKIQTD-LIRLIEVATDFFHHS  131 (648)
Q Consensus        60 ~~~~cf~c~~~g-d~~~f~~~~~~~~f~ea~~~la~~~gi~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  131 (648)
                      |+|-=+|+|.++ +.|.=+-|.+       |..||...||+-      |..+-...+.++..-. =|+.++.....+...
T Consensus         9 Gy~Tk~GD~~~d~~pi~~L~Kt~-------V~~Lar~l~vP~~ii~k~PSaeL~~~qtDE~~lg~~Y~~lD~~l~~~~~~   81 (136)
T 1xng_A            9 GYGTLFGDLACAINPIGELFKTE-------VYELARRLNIPKKILNKPPSADLFVGQSDEKDLGYPYSVIDPLLKDIEAL   81 (136)
T ss_dssp             TCSCTTTTTCCSEETTTTSCHHH-------HHHHHHHTTCCHHHHTSCCCCCSSTTCCHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHCCCCCCCCCCCHHH-------HHHHHHHHCCCHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHH
T ss_conf             65512544234300123768999-------99999981984887127999651236787665158889999999987752


Q ss_pred             HCCCCCHHHHHHHHHCCCCHHHHCCCC
Q ss_conf             326777578999985068853510124
Q gi|254780834|r  132 LKNARDKRLHYYLDERGIDSHAIEMFK  158 (648)
Q Consensus       132 l~~~~~~~a~~yl~~Rg~~~~~~~~f~  158 (648)
                      ...+.  ...+.|..-|++.+.++++.
T Consensus        82 ~~~~~--~~~~~l~~~~~~~~~v~~i~  106 (136)
T 1xng_A           82 FQTKP--IDTETLAQLGYDEILVKNIT  106 (136)
T ss_dssp             SSSSC--CCHHHHHHTTCCHHHHHHHH
T ss_pred             CCCCC--CCHHHHHHCCCCHHHHHHHH
T ss_conf             12245--89999988499999999999


No 190
>>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural genomics, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:1-14,A:100-235)
Probab=21.87  E-value=33  Score=11.77  Aligned_cols=29  Identities=17%  Similarity=0.209  Sum_probs=18.2

Q ss_pred             CEEEEEC-CH-HHHHHHHHCCCCCC-HHHHHC
Q ss_conf             7089971-43-88999874355421-134321
Q gi|254780834|r  272 SFIILVE-GY-MDVLSLCQAGVQNV-VSSLGT  300 (648)
Q Consensus       272 ~~~i~vE-Gy-~Dvi~l~~~G~~n~-va~~Gt  300 (648)
                      +.++.|. .+ -|+.+...+|+..+ |..-|.
T Consensus        91 ~~~i~VGD~~~~Di~~A~~aG~~ti~v~~~~~  122 (150)
T 2om6_A           91 EESLHIGDTYAEDYQGARKVGXWAVWINQEGD  122 (150)
T ss_dssp             GGEEEEESCTTTTHHHHHHTTSEEEEECTTCC
T ss_pred             CCCEEECCCCHHHHHHHHHCCCEEEEECCCCC
T ss_conf             22404436728669999986998999889998


No 191
>>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* (A:406-496,A:551-689)
Probab=21.77  E-value=33  Score=11.75  Aligned_cols=28  Identities=4%  Similarity=0.084  Sum_probs=15.8

Q ss_pred             CCHHHHCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             8853510124422567741034554205
Q gi|254780834|r  149 IDSHAIEMFKLGYAPDSRYSLREHLRQK  176 (648)
Q Consensus       149 ~~~~~~~~f~lG~ap~~~~~l~~~l~~~  176 (648)
                      ++++-+-.+.|-|+.+.++..++|+.++
T Consensus        93 lnpeRmPDIDiDf~~~~R~eVi~Yi~~k  120 (230)
T 3f2b_A           93 FKGDKVPDIDLNFSGEYQPRAHNYTKVL  120 (230)
T ss_dssp             TTSCSCCCEEEEEETTTHHHHHHHHHHH
T ss_pred             CCCCCCCHHHCCCCHHHHHHHHHHHHHH
T ss_conf             3313345322025247789999988876


No 192
>>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} (A:)
Probab=21.63  E-value=33  Score=11.73  Aligned_cols=38  Identities=16%  Similarity=0.068  Sum_probs=17.7

Q ss_pred             ECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCC
Q ss_conf             71438899987435542113432136626789885126
Q gi|254780834|r  277 VEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLS  314 (648)
Q Consensus       277 vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~  314 (648)
                      +++-.-.-.+...++...++.+-.-.+.+++.++.++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~e~l~~~a~~~   73 (337)
T 1ps1_A           36 IRSDAAAERHLRGGYADLASRFYPHATGADLDLGVDLM   73 (337)
T ss_dssp             CCSHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             89879999986059999999977899999999999999


No 193
>>1a1t_A Nucleocapsid protein; stem-loop RNA; NMR {Human immunodeficiency virus 1} (A:)
Probab=21.45  E-value=31  Score=12.02  Aligned_cols=11  Identities=36%  Similarity=0.914  Sum_probs=5.4

Q ss_pred             EEEECCCCCCC
Q ss_conf             46713688887
Q gi|254780834|r   61 FYYCFSCHVKG   71 (648)
Q Consensus        61 ~~~cf~c~~~g   71 (648)
                      .-+||-||..|
T Consensus        12 ~ikCfNCGk~G   22 (55)
T 1a1t_A           12 TVKCFNCGKEG   22 (55)
T ss_dssp             TCBCTTTCCBS
T ss_pred             CCEEECCCCCC
T ss_conf             61063578745


No 194
>>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A (A:)
Probab=21.39  E-value=34  Score=11.69  Aligned_cols=46  Identities=7%  Similarity=-0.072  Sum_probs=32.1

Q ss_pred             EECCCCEE-EECC-CCCCCCH-HHHHHHHCCCCHHHHHHHHHHHH-CCCC
Q ss_conf             81789746-7136-8888789-89989885999799999999981-8858
Q gi|254780834|r   55 CNDSKGFY-YCFS-CHVKGDH-LSFLSALLGCSFIESVQRLAAIA-GVPL  100 (648)
Q Consensus        55 v~~~~~~~-~cf~-c~~~gd~-~~f~~~~~~~~f~ea~~~la~~~-gi~~  100 (648)
                      ..+.+..+ ||-. =|.+|-+ .-++|...++++.||++.+..+- ++.+
T Consensus        78 ~~~~~~VlVHC~~G~~RS~~~~~~yL~~~~~~~~~~A~~~v~~~R~~~~~  127 (144)
T 3ezz_A           78 KDCRGRVLVHSQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRRSIISP  127 (144)
T ss_dssp             HHTTCCEEEEESSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHTTCTTCCC
T ss_pred             HHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
T ss_conf             62472278884012551799999999998399999999999998996689


No 195
>>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of NADP, oxidoreductase; HET: NAP; 2.00A {Homo sapiens} (A:)
Probab=21.28  E-value=34  Score=11.67  Aligned_cols=18  Identities=28%  Similarity=0.318  Sum_probs=8.3

Q ss_pred             HHHHHHHCCCCEEEEECC
Q ss_conf             887775369730675257
Q gi|254780834|r  337 LVLCHLIPGNRVNFVLLS  354 (648)
Q Consensus       337 ~~l~~l~~g~~v~vv~LP  354 (648)
                      ++-.+...|.+|+|+.=|
T Consensus        68 l~~~L~~~G~~V~faIHP   85 (207)
T 1djl_A           68 LVKMLTEQGKKVRFGIHP   85 (207)
T ss_dssp             HHHHHHHTTCEEEEEECT
T ss_pred             HHHHHHHCCCEEEEEECC
T ss_conf             999999779837898420


No 196
>>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A (A:1-148,A:302-364)
Probab=21.20  E-value=34  Score=11.66  Aligned_cols=38  Identities=5%  Similarity=0.033  Sum_probs=21.6

Q ss_pred             CEEEEE-ECCCCCCHHHHHHHH-HHHHHHHHCCCCE-EEEECCC
Q ss_conf             818996-178866225777888-8887775369730-6752578
Q gi|254780834|r  315 PRIVLC-FDGDDPGLRAAYKAI-DLVLCHLIPGNRV-NFVLLSR  355 (648)
Q Consensus       315 ~~vvl~-fDgD~AG~kAa~Ra~-e~~l~~l~~g~~v-~vv~LP~  355 (648)
                      .+|.++ --||.||.||+++++ +.++   ..+.++ +|.-..+
T Consensus         4 kni~I~~sGG~tpgiNasi~gvv~~a~---~~~~~v~~iyG~~~   44 (211)
T 3hno_A            4 KNAFYAQSGGVTAVINASAAGVIEAAR---KQSGKIGRIYAGRN   44 (211)
T ss_dssp             CEEEEEECSSCCSSHHHHHHHHHHHHH---HHCSSCCCEEEETT
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHHHHH---HCCCCEEEEEEECC
T ss_conf             648998888825889799999999999---83994879976735


No 197
>>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} (A:)
Probab=20.93  E-value=34  Score=11.62  Aligned_cols=27  Identities=26%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHCCCHHHHHHH
Q ss_conf             067525788888899720366889988
Q gi|254780834|r  348 VNFVLLSRGEDPDSFIRCYGKTAFEKL  374 (648)
Q Consensus       348 v~vv~LP~G~DPDe~ir~~G~eaf~~l  374 (648)
                      -.+|.+|+|.|-+||+-.+-.+-|..+
T Consensus        11 ~~~v~lP~g~d~neWlA~~~~~ff~~i   37 (185)
T 1pi1_A           11 RQAVMLPEGEDLNEWIAVNTVDFFNQI   37 (185)
T ss_dssp             HHHTSCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999449199871220999999999999


No 198
>>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5} (A:105-205)
Probab=20.88  E-value=2.3  Score=22.39  Aligned_cols=29  Identities=24%  Similarity=0.532  Sum_probs=18.9

Q ss_pred             CCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCC
Q ss_conf             88888754122210158877777557534588885878
Q gi|254780834|r   15 IPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPS   52 (648)
Q Consensus        15 ~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektps   52 (648)
                      +.||.+=|+...++|.|-       +  |||..+|-+.
T Consensus         4 VRI~~~~g~ilA~TRgG~-------I--CPfTT~rv~~   32 (101)
T 2vug_A            4 VRVVMYKGKMLGITRGGF-------I--CPFTTERIPD   32 (101)
T ss_dssp             EEEEEETTEEEEEETTSC-------B--CHHHHHHGGG
T ss_pred             EEEEEECCEEEEEECCCC-------C--CCCCHHHHHH
T ss_conf             999998999999948984-------5--7760566899


No 199
>>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii OT3} (B:1-81,B:145-215,B:313-382)
Probab=20.86  E-value=33  Score=11.79  Aligned_cols=15  Identities=33%  Similarity=0.341  Sum_probs=6.5

Q ss_pred             HHHHCCCCHHHHCCC
Q ss_conf             998506885351012
Q gi|254780834|r  143 YLDERGIDSHAIEMF  157 (648)
Q Consensus       143 yl~~Rg~~~~~~~~f  157 (648)
                      +|.+||++--++++-
T Consensus        23 ~La~~G~~v~ilE~~   37 (222)
T 1y56_B           23 ELAKRGEEVTVIEKR   37 (222)
T ss_dssp             HHHHTTCCEEEECSS
T ss_pred             HHHHCCCCEEEECCC
T ss_conf             999889939998699


No 200
>>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A (A:204-278)
Probab=20.61  E-value=35  Score=11.57  Aligned_cols=17  Identities=12%  Similarity=0.452  Sum_probs=13.5

Q ss_pred             EEEEEECCCCEEEEECC
Q ss_conf             88897077858885010
Q gi|254780834|r  207 IFPIRSSRGQVIAFGGR  223 (648)
Q Consensus       207 ~fPi~~~~g~~i~f~gR  223 (648)
                      -+|+-|..|+++|+=-+
T Consensus        29 ~lpVvD~~g~lvGiit~   45 (75)
T 2yvy_A           29 VLPVVDEEGRLVGIVTV   45 (75)
T ss_dssp             EEEEECTTSBEEEEEEH
T ss_pred             EEEEECCCCEEEEEEEH
T ss_conf             89898689969999789


No 201
>>1bjt_A Topoisomerase II; quaternary change, DNA-binding, DNA topology; 2.50A {Saccharomyces cerevisiae} (A:1-153,A:197-245)
Probab=20.53  E-value=35  Score=11.55  Aligned_cols=85  Identities=13%  Similarity=0.058  Sum_probs=45.9

Q ss_pred             CHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH-----HHHHHCCCCEEEEECCCCCCHHHHHHCCCH
Q ss_conf             113432136626789885126818996178866225777888888-----777536973067525788888899720366
Q gi|254780834|r  294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLV-----LCHLIPGNRVNFVLLSRGEDPDSFIRCYGK  368 (648)
Q Consensus       294 ~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~-----l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~  368 (648)
                      -+..+|+.+.......-..--.+|+||-|.|.-|..  .|++-+.     .|-|-..-.|+++..|=|.--+-..+++  
T Consensus        90 l~~aLG~~~~~~~~d~~~lRY~kIiImTDADvDGsH--Ir~LLltfF~r~~p~Li~~G~vyia~pP~gt~~~~~~~~y--  165 (202)
T 1bjt_A           90 IKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSH--IKGLIINFLESSFLGLLDIQGFLLEFITLGTSLAQEVREY--  165 (202)
T ss_dssp             HHHHHTCCSSBCCSCSSSSSCSEEEEEEC-----CC--HHHHHHHHHHHHBTTTTTSTTSEEECCCCSTTHHHHHHHH--
T ss_pred             HHHHHCCCCCCCCCCCHHCCCCCEEEEECCCCCCHH--HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH--
T ss_conf             999978898988786001676847999889888426--9999999999972897355884999848544560345777--


Q ss_pred             HHHHHHHHHCCCHHHHHHH
Q ss_conf             8899886414992799999
Q gi|254780834|r  369 TAFEKLIVESLPLVDMLWK  387 (648)
Q Consensus       369 eaf~~ll~~A~~l~dFl~~  387 (648)
                        |.++=...   +.|.|.
T Consensus       166 --~~~~~~h~---~~f~~~  179 (202)
T 1bjt_A          166 --FSNLDRHL---KIFHSL  179 (202)
T ss_dssp             --HHHHHHHH---HHHHHC
T ss_pred             --HCCCCCCC---CEEEEC
T ss_conf             --53600002---102312


No 202
>>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} (A:1-196)
Probab=20.52  E-value=31  Score=12.07  Aligned_cols=71  Identities=10%  Similarity=-0.047  Sum_probs=41.0

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHCC
Q ss_conf             9898859997999999999818858776---8203677788999999999999999997----32677757899998506
Q gi|254780834|r   76 FLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIRLIEVATDFFHHS----LKNARDKRLHYYLDERG  148 (648)
Q Consensus        76 f~~~~~~~~f~ea~~~la~~~gi~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~a~~yl~~Rg  148 (648)
                      .++..++.++.+....++...|.+-+-.   .+...+.      +.+--.....++...    -.+..|-+|...|.++|
T Consensus        30 ~l~~~~~~~~~~~~~~i~~~~~~~g~vsvev~~~d~~~------~i~~A~~l~~~~~ni~IKIP~T~~Gi~Ai~~L~~~G  103 (196)
T 1l6w_A           30 SIIAAGKKPLDVVLPQLHEAMGGQGRLFAQVMATTAEG------MVNDALKLRSIIADIVVKVPVTAEGLAAIKMLKAEG  103 (196)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHTTTCSEEEEECCCSSHHH------HHHHHHHHHHHSTTCEEEEECSHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHH------HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCC
T ss_conf             99986699999999999998098996899997376777------899999999728675899506275789999988739


Q ss_pred             CCHH
Q ss_conf             8853
Q gi|254780834|r  149 IDSH  152 (648)
Q Consensus       149 ~~~~  152 (648)
                      ++-.
T Consensus       104 I~vn  107 (196)
T 1l6w_A          104 IPTL  107 (196)
T ss_dssp             CCEE
T ss_pred             CCEE
T ss_conf             3288


No 203
>>1vcp_A Semliki forest virus capsid protein; virus coat protein, polyprotein, transmembrane, glycoprotein, nucleocapsid protein, viral protein; 3.00A {Semliki forest virus} (A:1-63)
Probab=20.51  E-value=35  Score=11.55  Aligned_cols=21  Identities=24%  Similarity=0.718  Sum_probs=16.0

Q ss_pred             EEEEEECCCCEEEE----ECCCCCCC
Q ss_conf             88897077858885----01001465
Q gi|254780834|r  207 IFPIRSSRGQVIAF----GGRTLSKG  228 (648)
Q Consensus       207 ~fPi~~~~g~~i~f----~gR~l~~~  228 (648)
                      +|||.. .|+|.|+    |||++.+-
T Consensus         2 ~F~v~~-dG~v~GyAc~vg~kv~kP~   26 (63)
T 1vcp_A            2 IFEVKH-EGKVTGYACLVGDKVMKPA   26 (63)
T ss_dssp             EEEEEE-TTEEEEEEECBTTEEBCBT
T ss_pred             EEEEEE-CCEEEEEEEEECCEEECCC
T ss_conf             103655-6725688999757630231


No 204
>>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} (A:200-366)
Probab=20.42  E-value=24  Score=13.09  Aligned_cols=14  Identities=0%  Similarity=0.176  Sum_probs=5.5

Q ss_pred             CCCCHHHHHHHHHH
Q ss_conf             37998899999999
Q gi|254780834|r  509 RYDNNELQKLWSFL  522 (648)
Q Consensus       509 ~f~~~~~~~L~~~i  522 (648)
                      ....|-+..+++.+
T Consensus       117 ~i~~Pl~~~vy~Il  130 (167)
T 1evy_A          117 KVKMPLCHQIYEIV  130 (167)
T ss_dssp             TCCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
T ss_conf             99984999999999


No 205
>>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* (A:1-348)
Probab=20.28  E-value=35  Score=11.51  Aligned_cols=26  Identities=15%  Similarity=0.342  Sum_probs=21.6

Q ss_pred             CCCCCHHHHHHCCCHHHHHHHHHHCC
Q ss_conf             78888889972036688998864149
Q gi|254780834|r  354 SRGEDPDSFIRCYGKTAFEKLIVESL  379 (648)
Q Consensus       354 P~G~DPDe~ir~~G~eaf~~ll~~A~  379 (648)
                      -.+.||++++.++|+|.++-++-...
T Consensus       301 gn~v~~~~~~~~yg~D~~R~~~~~~~  326 (348)
T 2csx_A          301 GNVVDPYEVVQEYGLDEVRYFLLREV  326 (348)
T ss_dssp             TCCCCHHHHHHHHCHHHHHHHHHHSS
T ss_pred             CCCCCHHHHHHHCCCCHHHHHHHHCC
T ss_conf             86569899998829779999776417


No 206
>>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloidosis--finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} (A:)
Probab=20.21  E-value=35  Score=11.50  Aligned_cols=55  Identities=13%  Similarity=0.182  Sum_probs=34.3

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC--CEEEEECCCCCCHHHHHHCCCHH
Q ss_conf             81899617886622577788888877753697--30675257888888997203668
Q gi|254780834|r  315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN--RVNFVLLSRGEDPDSFIRCYGKT  369 (648)
Q Consensus       315 ~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~--~v~vv~LP~G~DPDe~ir~~G~e  369 (648)
                      ...++..=|-.+=..--..|.+++..+.....  ...+..+.+|+.|++|.+..|..
T Consensus        37 ~~~ifvW~G~~s~~~ek~~A~~~a~~~~~~~~~~~~~i~~v~eg~E~~~F~~~~gg~   93 (104)
T 1kcq_A           37 GNNIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHVSEEGTEPEAMLQVLGPK   93 (104)
T ss_dssp             SSEEEEEECTTCCHHHHHHHHHHHHHHHHHTSTTCSEEEEEETTCCCHHHHHHHCSC
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCC
T ss_conf             998999989979999999999999999862779997399987899949999983998


No 207
>>3eat_X Pyoverdine biosynthesis protein PVCB; paerucumarin, Fe/alpha-ketoglutarate dependent hydroxylase, 2-isocyano-6,7-dihydroxycoumarin; 2.50A {Pseudomonas aeruginosa} (X:1-145,X:239-293)
Probab=20.17  E-value=23  Score=13.20  Aligned_cols=13  Identities=15%  Similarity=0.053  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             9999999981885
Q gi|254780834|r   87 ESVQRLAAIAGVP   99 (648)
Q Consensus        87 ea~~~la~~~gi~   99 (648)
                      ++++.+-.++|+-
T Consensus        46 ~~l~~~l~~~Gvv   58 (200)
T 3eat_X           46 QWLKGLARSHHLL   58 (200)
T ss_dssp             HHHHHHHHHHSEE
T ss_pred             HHHHHHHHHCCEE
T ss_conf             9999999875999


Done!