Query gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 648 No_of_seqs 198 out of 1905 Neff 7.9 Searched_HMMs 33803 Date Wed Jun 1 19:09:36 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780834.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1dd9_A DNA primase, DNAG; top 100.0 3.5E-30 1E-34 296.6 9.0 145 95-243 1-145 (145) 2 >2au3_A DNA primase; zinc ribb 99.9 8.6E-28 2.5E-32 274.6 9.2 127 110-241 3-129 (129) 3 >1dd9_A DNA primase, DNAG; top 99.8 8.7E-20 2.6E-24 201.0 11.2 139 244-392 1-139 (140) 4 >2au3_A DNA primase; zinc ribb 99.8 1.1E-18 3.4E-23 190.7 11.1 124 242-378 1-124 (125) 5 >2fcj_A Small toprim domain pr 99.8 7.2E-19 2.1E-23 192.6 5.2 104 270-380 3-118 (119) 6 >1t6t_1 Putative protein; stru 99.7 6.6E-18 2E-22 183.7 3.6 114 245-381 2-115 (118) 7 >1q57_A DNA primase/helicase; 99.6 3.1E-15 9.1E-20 159.2 7.2 117 245-381 1-123 (129) 8 >1nui_A DNA primase/helicase; 99.6 8.5E-15 2.5E-19 155.1 8.0 111 245-375 1-117 (118) 9 >1d0q_A DNA primase; zinc-bind 99.6 2.6E-15 7.8E-20 159.8 4.6 47 21-72 1-47 (47) 10 >2au3_A DNA primase; zinc ribb 99.5 3.5E-15 1E-19 158.6 4.7 47 21-72 1-47 (47) 11 >1d0q_A DNA primase; zinc-bind 97.9 4.4E-05 1.3E-09 65.8 6.6 49 2-102 4-52 (56) 12 >2r5u_A Replicative DNA helica 97.6 0.005 1.5E-07 46.9 14.1 68 479-546 29-96 (200) 13 >2r6a_A DNAB helicase, replica 97.4 0.0089 2.6E-07 44.6 12.9 66 480-545 13-78 (155) 14 >2r6a_C DNAG primase, helicase 97.1 0.0072 2.1E-07 45.4 9.9 90 478-576 4-93 (100) 15 >1b79_A DNAB helicase; hexamer 96.9 0.03 9E-07 39.7 11.3 69 480-548 20-88 (119) 16 >3gxv_A Replicative DNA helica 96.8 0.036 1.1E-06 39.0 11.4 70 481-550 11-80 (123) 17 >2q6t_A DNAB replication FORK 96.7 0.088 2.6E-06 35.4 17.6 66 480-545 9-75 (152) 18 >3bgw_A DNAB-like replicative 96.0 0.19 5.6E-06 32.3 11.6 63 481-545 15-77 (154) 19 >1t3w_A DNA primase; DNAG, DNA 91.4 1.2 3.6E-05 24.9 8.1 73 484-557 18-90 (109) 20 >2au3_A DNA primase; zinc ribb 90.9 0.3 8.9E-06 30.5 3.9 28 73-100 20-47 (48) 21 >1xmx_A Hypothetical protein V 82.5 3.4 1E-04 20.9 6.8 73 289-366 1-75 (141) 22 >2gai_A DNA topoisomerase I; z 78.9 2.9 8.5E-05 21.5 4.1 84 272-363 6-93 (100) 23 >1ffy_A Isoleucyl-tRNA synthet 78.7 1.5 4.5E-05 24.1 2.6 79 271-387 47-125 (272) 24 >3k9f_C DNA topoisomerase 4 su 78.4 4.4 0.00013 19.8 5.7 67 291-363 97-170 (187) 25 >1nui_A DNA primase/helicase; 76.6 3 8.7E-05 21.4 3.6 50 170-226 13-62 (72) 26 >1q57_A DNA primase/helicase; 75.6 3.5 0.0001 20.7 3.8 50 170-226 15-64 (74) 27 >2kao_A Methionine-R-sulfoxide 72.9 2.6 7.6E-05 21.9 2.5 25 42-69 3-28 (69) 28 >1xri_A AT1G05000; structural 70.2 3 8.9E-05 21.3 2.4 57 40-96 60-132 (151) 29 >3gjx_A Exportin-1; transport, 66.7 7.6 0.00022 17.6 7.2 80 357-436 19-110 (211) 30 >1d3y_A DNA topoisomerase VI A 64.7 6.3 0.00019 18.4 3.1 95 270-366 46-152 (226) 31 >1vdd_A Recombination protein 64.6 8.2 0.00024 17.3 6.2 84 269-357 11-106 (109) 32 >3f41_A Phytase; tandem repeat 63.2 8.6 0.00026 17.1 5.3 90 6-101 52-160 (212) 33 >1yn9_A BVP, polynucleotide 5' 62.7 4.6 0.00014 19.6 2.1 24 314-337 112-135 (169) 34 >3iac_A Glucuronate isomerase; 62.2 9 0.00027 17.0 4.3 24 77-100 73-96 (117) 35 >2vbc_A Dengue 4 NS3 FULL-leng 61.8 5.3 0.00016 19.1 2.3 19 208-226 50-68 (88) 36 >2img_A Dual specificity prote 60.6 5.9 0.00017 18.7 2.3 60 38-97 57-131 (151) 37 >2wgp_A Dual specificity prote 60.4 6 0.00018 18.6 2.3 36 61-96 107-144 (147) 38 >2hcm_A Dual specificity prote 60.1 7.6 0.00022 17.6 2.8 73 22-99 46-133 (164) 39 >2zbk_A Type II DNA topoisomer 60.0 6.4 0.00019 18.3 2.4 98 271-368 49-155 (236) 40 >2uzz_A N-methyl-L-tryptophan 58.8 5.9 0.00018 18.6 2.1 20 142-161 19-38 (154) 41 >1dsq_A Nucleic acid binding p 58.5 2.6 7.8E-05 21.9 0.2 11 63-73 4-14 (26) 42 >2e0t_A Dual specificity phosp 57.7 6.4 0.00019 18.3 2.1 36 61-96 89-126 (128) 43 >1svp_A Sindbis virus capsid p 56.9 7.3 0.00022 17.8 2.3 23 206-228 9-35 (72) 44 >1mw9_X DNA topoisomerase I; d 56.9 11 0.00032 16.3 5.1 85 272-364 3-93 (100) 45 >2fp7_B Polyprotein; flaviviru 55.7 7.1 0.00021 17.9 2.1 17 209-225 123-139 (172) 46 >2q01_A Uronate isomerase; str 55.1 11 0.00034 16.0 3.5 23 78-100 71-93 (114) 47 >1b3u_A Protein (protein phosp 54.8 11 0.00034 16.0 5.8 80 355-434 11-92 (111) 48 >1twf_J DNA-directed RNA polym 54.6 12 0.00034 16.0 3.2 30 63-92 6-39 (70) 49 >2i6j_A Ssoptp, sulfolobus sol 52.8 7.2 0.00021 17.8 1.7 40 61-100 93-134 (161) 50 >2g6z_A Dual specificity prote 51.6 13 0.00037 15.6 3.5 63 38-100 51-128 (211) 51 >2r4f_A 3-hydroxy-3-methylglut 51.5 13 0.00037 15.6 3.2 47 314-360 53-103 (105) 52 >2qx5_A Nucleoporin NIC96; mRN 51.2 13 0.00038 15.6 3.5 13 485-497 68-80 (207) 53 >2wv9_A Flavivirin protease NS 51.1 9.9 0.00029 16.6 2.2 17 146-164 81-97 (231) 54 >1s1i_9 L37A, YL35, 60S riboso 51.1 9.6 0.00029 16.7 2.1 26 41-69 36-61 (91) 55 >1ile_A Ilers, isoleucyl-tRNA 50.6 13 0.00039 15.5 2.8 70 271-379 37-106 (305) 56 >2ggv_B NS3, non-structural pr 50.5 10 0.0003 16.4 2.2 17 209-225 137-153 (185) 57 >2pq5_A Dual specificity prote 50.5 8.2 0.00024 17.3 1.7 38 62-99 136-175 (205) 58 >3cc2_Z 50S ribosomal protein 50.3 9.6 0.00029 16.7 2.0 25 41-69 61-86 (116) 59 >2hxp_A Dual specificity prote 50.0 11 0.00033 16.1 2.3 40 61-100 89-131 (155) 60 >3cxk_A Methionine-R-sulfoxide 49.5 12 0.00035 15.8 2.4 14 147-160 59-72 (164) 61 >1b3u_A Protein (protein phosp 49.4 14 0.0004 15.3 3.2 18 358-375 24-41 (127) 62 >3e90_B NS3 protease; trypsin- 49.3 11 0.00031 16.3 2.1 17 209-225 142-158 (198) 63 >1vh4_A SUFD protein; structur 48.4 10 0.00031 16.4 1.9 82 347-436 342-424 (435) 64 >2waq_N DNA-directed RNA polym 48.0 14 0.00042 15.2 3.0 31 63-93 6-39 (66) 65 >1vq8_Z 50S ribosomal protein 48.0 11 0.00033 16.1 2.0 25 41-69 28-53 (83) 66 >3f81_A Dual specificity prote 47.0 15 0.00043 15.0 2.7 61 40-100 83-160 (183) 67 >1zbr_A AAQ65385, conserved hy 46.5 15 0.00044 15.0 3.0 53 303-355 1-58 (59) 68 >3hcj_A MSRB, peptide methioni 46.4 7.4 0.00022 17.7 0.9 14 56-69 7-20 (69) 69 >2k8d_A Peptide methionine sul 45.3 8.6 0.00026 17.1 1.1 14 56-69 29-42 (63) 70 >1m1j_A Fibrinogen alpha subun 44.9 15 0.00046 14.8 5.2 14 619-632 32-45 (373) 71 >2zkr_z 60S ribosomal protein 44.8 16 0.00046 14.8 2.6 25 42-69 38-62 (71) 72 >2fom_B Polyprotein; flaviviru 44.6 13 0.00039 15.5 2.0 16 209-224 138-153 (185) 73 >3ljn_A Hypothetical protein; 43.9 6.4 0.00019 18.3 0.3 21 42-66 3-23 (93) 74 >2aja_A Ankyrin repeat family 43.4 11 0.00032 16.2 1.4 58 242-315 50-107 (156) 75 >3iar_A Adenosine deaminase; p 42.9 11 0.00032 16.3 1.3 66 79-153 14-79 (188) 76 >1ses_A Seryl-tRNA synthetase; 42.0 17 0.0005 14.4 8.8 52 584-639 16-67 (83) 77 >1b3u_A Protein (protein phosp 41.4 15 0.00043 15.0 1.8 66 357-422 20-86 (117) 78 >1wii_A Hypothetical UPF0222 p 41.0 17 0.00051 14.3 2.6 30 42-71 25-57 (85) 79 >2esb_A Dual specificity prote 40.7 18 0.00052 14.3 2.7 35 62-96 102-138 (188) 80 >3emu_A Leucine rich repeat an 40.6 18 0.00052 14.3 2.7 60 38-97 55-129 (161) 81 >2oud_A Dual specificity prote 40.3 18 0.00053 14.2 2.3 40 61-100 91-133 (177) 82 >3hvm_A Agmatine deiminase; hy 40.2 18 0.00053 14.2 3.0 53 303-355 1-58 (67) 83 >3e7h_A DNA-directed RNA polym 40.2 4.8 0.00014 19.5 -0.8 53 200-260 12-72 (81) 84 >1nc8_A Nucleocapsid protein; 39.7 11 0.00032 16.2 1.0 16 58-73 3-18 (29) 85 >1a12_A RCC1, regulator of chr 39.7 18 0.00052 14.3 2.0 11 211-221 74-84 (188) 86 >2r0b_A Serine/threonine/tyros 39.7 18 0.00054 14.2 2.9 37 61-97 94-132 (154) 87 >3e0m_A Peptide methionine sul 39.6 17 0.00051 14.4 2.0 15 147-161 42-56 (160) 88 >2dq0_A Seryl-tRNA synthetase; 39.6 18 0.00054 14.1 9.2 61 574-636 33-93 (113) 89 >1wrm_A Dual specificity phosp 38.7 19 0.00055 14.0 2.9 44 57-100 82-128 (165) 90 >3cqy_A Anhydro-N-acetylmurami 38.4 19 0.00056 14.0 2.0 52 245-322 99-153 (180) 91 >2k5e_A Uncharacterized protei 37.9 17 0.00049 14.5 1.7 34 152-185 23-59 (73) 92 >1q77_A Hypothetical protein A 37.8 19 0.00057 13.9 4.1 39 312-353 2-40 (138) 93 >1nui_A DNA primase/helicase; 37.5 19 0.00057 13.9 4.0 29 40-70 14-42 (65) 94 >3i1a_A Spectinomycin phosphot 37.5 15 0.00045 14.8 1.4 16 285-300 68-83 (103) 95 >2dq3_A Seryl-tRNA synthetase; 37.4 19 0.00057 13.9 5.6 51 586-638 44-94 (112) 96 >1z0j_B FYVE-finger-containing 37.3 19 0.00058 13.9 6.8 45 589-633 12-56 (59) 97 >2k53_A A3DK08 protein; NESG, 37.1 20 0.00058 13.8 1.9 25 161-185 33-57 (76) 98 >3bfv_A CAPA1, CAPB2, membrane 36.9 20 0.00058 13.8 5.2 78 282-363 183-260 (271) 99 >3hcg_A Peptide methionine sul 36.8 16 0.00047 14.7 1.4 14 147-160 29-42 (146) 100 >1wle_A Seryl-tRNA synthetase; 36.7 20 0.00059 13.8 11.1 69 571-639 31-105 (121) 101 >3jyw_9 60S ribosomal protein 36.7 15 0.00045 14.8 1.3 26 41-69 27-52 (72) 102 >1b3u_A Protein (protein phosp 36.4 20 0.00059 13.8 5.5 75 357-431 18-94 (155) 103 >1ffk_W Ribosomal protein L37A 36.3 19 0.00055 14.0 1.7 26 41-69 28-53 (61) 104 >3fmc_A Putative succinylgluta 35.9 17 0.0005 14.4 1.4 15 51-65 60-74 (76) 105 >1jmv_A USPA, universal stress 35.2 21 0.00061 13.6 4.8 36 314-352 2-37 (141) 106 >2f46_A Hypothetical protein; 35.2 21 0.00062 13.6 2.1 24 71-94 116-139 (156) 107 >3can_A Pyruvate-formate lyase 34.9 21 0.00062 13.6 6.8 77 282-362 23-112 (182) 108 >3f62_A Interleukin 18 binding 34.7 16 0.00046 14.7 1.1 23 48-70 6-28 (109) 109 >2iye_A Copper-transporting AT 34.4 21 0.00063 13.5 4.4 121 238-381 29-157 (164) 110 >1fpz_A Cyclin-dependent kinas 34.1 22 0.00064 13.5 2.1 25 314-338 132-156 (212) 111 >3kb9_A EPI-isozizaene synthas 33.4 22 0.00065 13.4 4.5 12 510-521 36-47 (177) 112 >2etv_A Iron(III) ABC transpor 33.4 20 0.0006 13.7 1.5 39 285-326 27-68 (171) 113 >1juh_A Quercetin 2,3-dioxygen 33.4 15 0.00044 14.9 0.8 10 228-237 22-31 (152) 114 >1pj3_A NAD-dependent malic en 33.0 22 0.00066 13.3 2.5 123 144-324 18-143 (305) 115 >1taf_B TFIID TBP associated f 32.9 22 0.00066 13.3 5.3 49 85-134 8-57 (70) 116 >2nt2_A Protein phosphatase sl 32.8 22 0.00066 13.3 2.3 44 57-100 80-127 (145) 117 >3f6q_B LIM and senescent cell 32.8 17 0.00051 14.4 1.0 15 54-68 27-43 (45) 118 >3cxj_A Uncharacterized protei 32.5 23 0.00067 13.3 3.8 55 295-363 54-108 (165) 119 >1ef4_A Subunit N, DNA-directe 32.3 23 0.00067 13.2 2.7 31 63-93 5-38 (55) 120 >3bk2_A RNAse J, metal depende 32.2 23 0.00068 13.2 2.4 45 200-244 18-80 (161) 121 >1yz4_A DUSP15, dual specifici 32.1 23 0.00068 13.2 2.5 59 39-97 52-126 (160) 122 >1dzl_A Late major capsid prot 32.1 23 0.00068 13.2 1.7 14 198-211 90-103 (505) 123 >2vqp_A Matrix protein; viral 31.8 15 0.00044 14.9 0.6 18 37-54 18-36 (133) 124 >2pt0_A MYO-inositol hexaphosp 31.5 23 0.00069 13.1 8.3 89 6-100 52-158 (214) 125 >3pfk_A Phosphofructokinase; t 31.3 24 0.0007 13.1 4.3 35 315-351 2-37 (186) 126 >1vcp_A Semliki forest virus c 31.2 24 0.0007 13.1 2.4 12 209-220 41-52 (86) 127 >1gqe_A Release factor 2, RF2; 31.1 24 0.0007 13.1 12.0 93 539-634 23-116 (120) 128 >2e9h_A EIF-5, eukaryotic tran 31.1 24 0.0007 13.1 1.8 32 42-73 2-35 (54) 129 >1vho_A Endoglucanase; structu 30.8 16 0.00047 14.7 0.6 63 273-335 60-128 (259) 130 >1qtq_A GLNRS, protein (glutam 30.7 14 0.0004 15.3 0.3 71 140-228 31-101 (175) 131 >3e3v_A Regulatory protein REC 30.6 19 0.00057 13.9 1.0 18 138-155 36-53 (64) 132 >1vd4_A Transcription initiati 30.5 24 0.00071 13.0 1.8 30 38-69 14-47 (62) 133 >1iq0_A Arginyl-tRNA synthetas 30.0 25 0.00073 12.9 2.8 28 353-380 41-68 (209) 134 >1pfk_A Phosphofructokinase; t 29.8 25 0.00073 12.9 4.1 34 315-350 3-37 (185) 135 >2w84_A Peroxisomal membrane p 29.7 25 0.00073 12.9 2.5 36 121-156 18-54 (70) 136 >1efd_N Ferrichrome-binding pe 29.2 25 0.00074 12.9 1.4 69 284-355 29-101 (104) 137 >1svp_A Sindbis virus capsid p 29.1 25 0.00075 12.8 2.4 12 209-220 41-52 (89) 138 >1kxf_A Sindbis virus capsid p 29.1 25 0.00075 12.8 2.4 12 209-220 41-52 (87) 139 >1yzm_A FYVE-finger-containing 29.1 25 0.00075 12.8 6.8 44 590-633 6-49 (51) 140 >1zzw_A Dual specificity prote 29.0 25 0.00075 12.8 2.7 40 61-100 87-129 (149) 141 >3eol_A Isocitrate lyase; seat 28.9 25 0.00075 12.8 1.5 34 275-308 48-81 (85) 142 >1yqf_A Hypothetical protein L 28.8 26 0.00076 12.8 1.6 16 210-225 98-113 (203) 143 >1twf_I B12.6, DNA-directed RN 28.5 26 0.00076 12.7 2.6 29 41-69 20-55 (69) 144 >1ep5_B Capsid protein C, coat 28.3 26 0.00077 12.7 2.4 12 209-220 41-52 (87) 145 >1ky9_A Protease DO, DEGP, HTR 28.2 26 0.00077 12.7 2.6 23 209-231 85-107 (134) 146 >1z0k_B FYVE-finger-containing 28.2 26 0.00077 12.7 6.1 43 590-632 24-66 (69) 147 >3iyj_F Major capsid protein L 28.2 23 0.00069 13.1 1.1 11 56-66 88-100 (495) 148 >1p0z_A Sensor kinase CITA; tr 27.9 26 0.00078 12.6 2.8 22 205-226 103-124 (131) 149 >1gq2_A Malic enzyme; oxidored 27.7 27 0.00079 12.6 2.6 45 280-324 95-140 (298) 150 >2vpu_A TET3, 354AA long hypot 27.7 18 0.00053 14.2 0.4 40 298-337 93-133 (259) 151 >1i7d_A DNA topoisomerase III; 27.6 27 0.00079 12.6 3.1 59 305-364 86-144 (152) 152 >3fos_A Sensor protein; sensor 27.6 27 0.00079 12.6 1.6 68 144-225 27-98 (100) 153 >3ff5_A PEX14P, peroxisomal bi 27.6 27 0.00079 12.6 3.3 37 120-156 12-49 (54) 154 >2pfs_A USP, universal stress 27.5 27 0.00079 12.6 4.6 37 314-353 6-42 (150) 155 >3h7c_X Agmatine deiminase; st 27.4 27 0.00079 12.6 3.3 72 284-355 36-116 (134) 156 >2iw3_A Elongation factor 3A; 27.3 27 0.0008 12.6 1.6 18 358-375 22-39 (170) 157 >2be1_A Serine/threonine-prote 26.9 27 0.00081 12.5 1.5 13 198-210 52-64 (109) 158 >3e3v_A Regulatory protein REC 26.9 27 0.00081 12.5 3.8 35 122-156 5-41 (45) 159 >2hjn_A MPS1 binder 1, mainten 26.5 28 0.00082 12.5 1.9 30 345-374 61-90 (236) 160 >1ep5_B Capsid protein C, coat 26.0 28 0.00083 12.4 2.1 22 206-228 8-33 (70) 161 >2ysa_A Retinoblastoma-binding 26.0 15 0.00045 14.8 -0.2 15 61-75 7-21 (55) 162 >2q1f_A Chondroitinase; alpha 25.8 19 0.00055 14.0 0.2 67 156-237 117-186 (190) 163 >1jmu_B Protein MU-1; protein- 25.4 26 0.00076 12.8 0.9 16 140-155 79-94 (145) 164 >1zxx_A 6-phosphofructokinase; 25.4 29 0.00085 12.3 4.8 15 231-245 58-72 (182) 165 >1rxd_A Protein tyrosine phosp 25.1 29 0.00086 12.3 2.3 28 67-94 107-134 (159) 166 >2yvq_A Carbamoyl-phosphate sy 25.0 15 0.00046 14.8 -0.3 16 285-301 45-60 (143) 167 >3e0o_A Peptide methionine sul 24.7 30 0.00087 12.2 1.4 12 149-160 17-28 (131) 168 >2z08_A Universal stress prote 24.6 30 0.00088 12.2 3.7 37 314-353 2-38 (137) 169 >2gf3_A MSOX, monomeric sarcos 24.4 19 0.00055 14.1 0.0 20 140-159 18-37 (228) 170 >3dlo_A Universal stress prote 24.3 30 0.00089 12.1 5.1 38 314-354 24-62 (155) 171 >3clc_A Regulatory protein; pr 24.2 30 0.00089 12.1 1.4 39 146-184 33-71 (82) 172 >3icy_A Sensor protein; sensor 23.9 30 0.0009 12.1 2.8 21 206-226 55-75 (77) 173 >1mbm_A NSP4 proteinase, chymo 23.8 31 0.0009 12.1 1.1 14 59-72 102-116 (149) 174 >1ev0_A MINE; topological spec 23.6 25 0.00074 12.8 0.6 25 4-30 5-29 (58) 175 >3c1d_A Protein ORAA, regulato 23.5 31 0.00091 12.0 4.0 34 123-156 6-40 (47) 176 >2yzq_A Putative uncharacteriz 23.1 31 0.00093 12.0 2.3 18 206-223 32-49 (77) 177 >3d5l_A Regulatory protein REC 23.1 31 0.00093 12.0 3.9 35 122-156 5-41 (45) 178 >1tq8_A Hypothetical protein R 23.0 31 0.00093 11.9 3.0 41 312-355 15-55 (128) 179 >1fmk_A C-SRC, P60-SRC, tyrosi 23.0 11 0.00032 16.2 -1.4 76 141-221 6-84 (192) 180 >2jer_A Agmatine deiminase; hy 22.8 32 0.00094 11.9 2.5 72 284-355 37-116 (133) 181 >2k4q_A Major tail protein V; 22.7 32 0.00094 11.9 4.9 36 316-357 84-119 (156) 182 >1yzy_A Hypothetical protein H 22.6 32 0.00094 11.9 1.8 16 206-221 110-125 (413) 183 >2ja2_A Glutamyl-tRNA syntheta 22.5 32 0.00095 11.9 2.9 34 132-165 91-126 (168) 184 >1ka5_A Phosphocarrier protein 22.4 32 0.00095 11.8 5.1 62 306-377 22-83 (88) 185 >2pke_A Haloacid delahogenase- 22.1 33 0.00096 11.8 1.2 61 275-335 24-87 (163) 186 >1ryi_A Glycine oxidase; flavo 22.1 25 0.00074 12.9 0.3 17 143-159 35-51 (228) 187 >3c8f_A Pyruvate formate-lyase 22.1 33 0.00097 11.8 6.4 78 286-363 94-181 (245) 188 >2jk1_A HUPR, hydrogenase tran 22.0 33 0.00097 11.8 6.0 99 273-380 3-105 (139) 189 >1xng_A NH(3)-dependent NAD(+) 22.0 33 0.00097 11.8 3.4 90 60-158 9-106 (136) 190 >2om6_A Probable phosphoserine 21.9 33 0.00097 11.8 2.3 29 272-300 91-122 (150) 191 >3f2b_A DNA-directed DNA polym 21.8 33 0.00098 11.8 2.5 28 149-176 93-120 (230) 192 >1ps1_A Pentalenene synthase; 21.6 33 0.00098 11.7 4.0 38 277-314 36-73 (337) 193 >1a1t_A Nucleocapsid protein; 21.4 31 0.00091 12.0 0.7 11 61-71 12-22 (55) 194 >3ezz_A Dual specificity prote 21.4 34 0.00099 11.7 2.5 46 55-100 78-127 (144) 195 >1djl_A Transhydrogenase DIII; 21.3 34 0.001 11.7 4.2 18 337-354 68-85 (207) 196 >3hno_A Pyrophosphate-dependen 21.2 34 0.001 11.7 4.7 38 315-355 4-44 (211) 197 >1pi1_A MOB1A; mitotic EXIT ne 20.9 34 0.001 11.6 1.3 27 348-374 11-37 (185) 198 >2vug_A PAB1020; RNA, ligase, 20.9 2.3 6.8E-05 22.4 -5.2 29 15-52 4-32 (101) 199 >1y56_B Sarcosine oxidase; deh 20.9 33 0.00097 11.8 0.7 15 143-157 23-37 (222) 200 >2yvy_A MGTE, Mg2+ transporter 20.6 35 0.001 11.6 2.3 17 207-223 29-45 (75) 201 >1bjt_A Topoisomerase II; quat 20.5 35 0.001 11.6 2.8 85 294-387 90-179 (202) 202 >1l6w_A Fructose-6-phosphate a 20.5 31 0.0009 12.1 0.5 71 76-152 30-107 (196) 203 >1vcp_A Semliki forest virus c 20.5 35 0.001 11.5 2.4 21 207-228 2-26 (63) 204 >1evy_A Glycerol-3-phosphate d 20.4 24 0.0007 13.1 -0.1 14 509-522 117-130 (167) 205 >2csx_A Methionyl-tRNA synthet 20.3 35 0.001 11.5 2.9 26 354-379 301-326 (348) 206 >1kcq_A Gelsolin, brevin, ADF, 20.2 35 0.001 11.5 4.5 55 315-369 37-93 (104) 207 >3eat_X Pyoverdine biosynthesi 20.2 23 0.00068 13.2 -0.2 13 87-99 46-58 (200) No 1 >>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein; HET: DNA; 1.60A {Escherichia coli} (A:1-145) Probab=99.96 E-value=3.5e-30 Score=296.65 Aligned_cols=145 Identities=34% Similarity=0.638 Sum_probs=133.9 Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHH Q ss_conf 81885877682036777889999999999999999973267775789999850688535101244225677410345542 Q gi|254780834|r 95 IAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 (648) Q Consensus 95 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~ 174 (648) .|||++|... ..++..+++.++++++.|++|||.+|+++.+++|++||.+|||++++|+.|+|||||.+|+.|..++. T Consensus 1 ~~gi~l~~~~--~~~~~~~~~~l~~~~~~a~~~y~~~L~~~~~~~a~~YL~~Rgl~~~~i~~F~lGyap~~~~~l~~~~~ 78 (145) T 1dd9_A 1 MRGSHHHHHH--GSGSMHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFG 78 (145) T ss_dssp ---------------------CHHHHHHHHHHHHHHHHTSGGGHHHHHHHHHTTCCHHHHHHHTCEEECSSSCHHHHHHC T ss_pred CCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHH T ss_conf 9875445667--88767799999999999999999996897408999999977989999986512547655799999987 Q ss_pred CCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCCCC Q ss_conf 059973452320121003465410000167168889707785888501001465530010387676535 Q gi|254780834|r 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 (648) Q Consensus 175 ~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~if~ 243 (648) ++|++.++|.++||+..+++|. +||+|+|||||||+|..|+|||||||+|+++ .|||||||||++|+ T Consensus 79 ~~~~~~~~l~~~GL~~~~~~g~-~~d~F~~RiifPI~d~~G~vvgF~gR~l~~~-~pKYlNspet~iF~ 145 (145) T 1dd9_A 79 GNPENRQSLIDAGMLVTNDQGR-SYDRFRERVMFPIRDKRGRVIGFGGRVLGND-TPKYLNSPETDIFH 145 (145) T ss_dssp SSHHHHHHHHHTTSEEEC---C-EEESCCSEEEEEEECTTSCEEEEEEEESSSC-SCSEEECCCCSSCC T ss_pred HCCCCHHHHHHCCCEEECCCCC-CHHHHCCEEEEEEECCCCEEEEEEEEECCCC-CCCCCCCCCCCCCC T ss_conf 5798767787547734346533-0122223268888516621899931231666-43245788754544 No 2 >>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:96-224) Probab=99.95 E-value=8.6e-28 Score=274.63 Aligned_cols=127 Identities=32% Similarity=0.573 Sum_probs=115.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCC Q ss_conf 77889999999999999999973267775789999850688535101244225677410345542059973452320121 Q gi|254780834|r 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL 189 (648) Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~ 189 (648) +...+..++++++.|++|||.+|++ +++|++||++|||++++|+.|+|||||++|. +..++.++||+.+++.++||+ T Consensus 3 k~~~~~~~~~i~~~a~~fy~~~L~~--~~~a~~YL~~Rgl~~e~i~~F~lGyap~~~~-~~~~~~~~~~~~~~l~~~Gl~ 79 (129) T 2au3_A 3 KISKDEKVYVALDRVCDFYRESLLK--NREASEYVKSRGIDPKVARKFDLGYAPSSEA-LVKVLKENDLLEAYLETKNLL 79 (129) T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHTTCCHHHHHHTTCEECCCHHH-HHHHHHHHTCHHHHHTTTCEE T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHCCCCHHHHHHHHHCCCCCCHH-HHHHHHHCCHHHHHHHHHCCC T ss_conf 2210268999999999999875312--5679999886487477775432114776245-666664112037777752233 Q ss_pred EECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCC Q ss_conf 0034654100001671688897077858885010014655300103876765 Q gi|254780834|r 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 (648) Q Consensus 190 ~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~i 241 (648) ...+++ +||+|+|||||||+|..|+|||||||+|+++..|||||||||+| T Consensus 80 ~~~~~~--~~d~F~~RiifPI~d~~G~vvgF~GR~l~~~~~pKYlNSpeT~i 129 (129) T 2au3_A 80 SPTKGV--YRDLFLRRVVIPIKDPRGRVIGFGGRRIVEDKSPKYINSPDSRV 129 (129) T ss_dssp CSSTTC--CEETTTTEEEEEEECTTSCEEEEEEEECSCCSSCSEEECCCCSS T ss_pred CCCCCC--CCCCHHHCCCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCEE T ss_conf 135787--65310001244304258956643100014566755345443300 No 3 >>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein; HET: DNA; 1.60A {Escherichia coli} (A:146-285) Probab=99.82 E-value=8.7e-20 Score=200.98 Aligned_cols=139 Identities=35% Similarity=0.683 Sum_probs=132.0 Q ss_pred CCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECC Q ss_conf 21011081788886433100002356787089971438899987435542113432136626789885126818996178 Q gi|254780834|r 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDG 323 (648) Q Consensus 244 K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDg 323 (648) ||+.|||++.+.+.+++ .++++||||++|+++++++|+.++|+++|+++|..|+..|.+..++|++|||+ T Consensus 1 K~~~lyg~~~~~~~~~~----------~~~v~i~EG~~Dals~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~D~ 70 (140) T 1dd9_A 1 KGRQLYGLYEAQQDNAE----------PNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDG 70 (140) T ss_dssp TTTCCBTHHHHHHTCSS----------CSCEEEESSHHHHHHHHHTTCCCEEECCC-CCCHHHHHHHHHHCSEEEEEEES T ss_pred CHHHCCCHHHHHHHCCC----------CCCEEEEECHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHCCCCEEEEECC T ss_conf 20211325554321155----------65259995579899998715234401331021178999987407745787536 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 866225777888888777536973067525788888899720366889988641499279999999853 Q gi|254780834|r 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETEN 392 (648) Q Consensus 324 D~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l~dFl~~~l~~~ 392 (648) |.||++++.++...+..+...+..+++..+|+|+||+|+++++|.++|.++++++.|+.+|+++.+.++ T Consensus 71 D~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kD~nd~~~~~g~e~~~~~i~~a~~~~~~~~~~~~~~ 139 (140) T 1dd9_A 71 DRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQ 139 (140) T ss_dssp SHHHHHHHHHHHHHHGGGCCTTCEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEHHHHHHHHHGGG T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHC T ss_conf 620216788589987687359973899980589988999885177999999862888999999999855 No 4 >>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:225-349) Probab=99.79 E-value=1.1e-18 Score=190.74 Aligned_cols=124 Identities=45% Similarity=0.770 Sum_probs=117.3 Q ss_pred CCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEE Q ss_conf 35210110817888864331000023567870899714388999874355421134321366267898851268189961 Q gi|254780834|r 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCF 321 (648) Q Consensus 242 f~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~f 321 (648) |+|++.|||++.++..+++. ++++||||++|+++++|+|++++|+++||+++..|+..+.+..++||||+ T Consensus 1 f~k~~~lygl~~~~~~~~~~----------~~v~i~EG~~dals~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~vvi~~ 70 (125) T 2au3_A 1 FKKGENLFGLYEAKEYIKEE----------GFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQNQANLLSKFTKKVYILY 70 (125) T ss_dssp CCGGGCEETHHHHHHHHHHH----------TCEEECSSHHHHHHHHHTTCCSEEEESSSSCCHHHHHHHHTTCSEEEEEC T ss_pred ECCCCCCCCCHHHHHHHCCC----------CCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEC T ss_conf 03464444410122210134----------41033046235678876186553343123433688988761277236742 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHC Q ss_conf 788662257778888887775369730675257888888997203668899886414 Q gi|254780834|r 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES 378 (648) Q Consensus 322 DgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A 378 (648) |+|.||++|+.+....+ ...+..++++.+|+++|++|+++++|.+++++++++| T Consensus 71 D~D~aG~~~a~~~~~~l---~~~~~~~~~~~~p~~kD~nD~l~~~g~e~l~~~l~~a 124 (125) T 2au3_A 71 DGDDAGRKAMKSAIPLL---LSAGVEVYPVYLPEGYDPDEFIKEFGKEELRRLINSS 124 (125) T ss_dssp CSSHHHHHHHHHHHHHH---HHTTCEEEEECCCTTCCHHHHHHHHCHHHHHHHHHHC T ss_pred CCCHHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCHHHHHHHCCHHHHHHHHHCC T ss_conf 78677775578877654---0236521366589998849999864999999999668 No 5 >>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} (A:) Probab=99.75 E-value=7.2e-19 Score=192.55 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=94.3 Q ss_pred CCCEEEEECCHHHHHHHHHCCCCCCHHHH-HCCCCHHHHHHHHHCCC--EEEEEECCCCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 78708997143889998743554211343-21366267898851268--1899617886622577788888877753697 Q gi|254780834|r 270 SSSFIILVEGYMDVLSLCQAGVQNVVSSL-GTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 (648) Q Consensus 270 ~~~~~i~vEGy~Dvi~l~~~G~~n~va~~-Gtalt~~~~~~l~r~~~--~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~ 346 (648) ..+++||||||||||+|||+|++||||++ |||+|.+|+++|+++++ +|++|||||.||++|+.+.... .. T Consensus 3 k~~~viIVEG~~D~i~l~~~G~~n~Va~~~gta~~~~~l~~l~~~~~~~~iil~~D~D~aG~~a~~~l~~~-------l~ 75 (119) T 2fcj_A 3 RVEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKLRRQFRRM-------FP 75 (119) T ss_dssp CCCEEEEESSHHHHHHHHHHBSSCCEEEECCSCCCHHHHHHHHHHTTTSEEEEECCSSHHHHHHHHHHHHH-------CT T ss_pred CCCEEEEECCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHH-------CC T ss_conf 28989998088999999981898869768986373999999999708984899844892889999999986-------78 Q ss_pred CEEEEECCCC---------CCHHHHHHCCCHHHHHHHHHHCCC Q ss_conf 3067525788---------888899720366889988641499 Q gi|254780834|r 347 RVNFVLLSRG---------EDPDSFIRCYGKTAFEKLIVESLP 380 (648) Q Consensus 347 ~v~vv~LP~G---------~DPDe~ir~~G~eaf~~ll~~A~~ 380 (648) .++++.+|.| +||+++++++|.+++..++++|.| T Consensus 76 ~~~~~~~~~~~~~~~~~~~~d~~e~l~~~~~~~~~~~i~~a~~ 118 (119) T 2fcj_A 76 EAEHLYIDRAYREVAAAPIWHLAQVLLRARFDVRIESLMRGRG 118 (119) T ss_dssp TSEEECCCTTTCSTTTSCHHHHHHHHHHTTCCBCGGGTC---- T ss_pred CCCEEEECCCCCCHHCCCHHHHHHHHHHCCCHHHHHHHHHHCC T ss_conf 5538885465410202456789999997761688988887337 No 6 >>1t6t_1 Putative protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.80A {Aquifex aeolicus VF5} (1:) Probab=99.70 E-value=6.6e-18 Score=183.71 Aligned_cols=114 Identities=29% Similarity=0.227 Sum_probs=105.0 Q ss_pred CHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCC Q ss_conf 10110817888864331000023567870899714388999874355421134321366267898851268189961788 Q gi|254780834|r 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGD 324 (648) Q Consensus 245 ~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD 324 (648) +++|||++++++.++.. ..+++|||||++||++|+++|++||||++|+++++.|+..|+++ .+||+|||+| T Consensus 2 ~e~lygl~~~~~~~~~~--------~~~~viIvEG~~Dalsl~~~G~~~~va~~g~~~~~~~~~~l~~~-~~vii~~D~D 72 (118) T 1t6t_1 2 TKEPRNLSEWIKELKKA--------SREAVILVEGKNDKKALSKFSIKNVIDLSGKRYADVVDXLEGKW-EKVILLFDLD 72 (118) T ss_dssp ---CCSHHHHHHHHHHH--------TTTSEEEESSHHHHHHHHTTTCCCEEECTTSCHHHHHHHHTTTC-SEEEECCCSS T ss_pred CCCHHHHHHHHHHHHHC--------CCCCEEEEECHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHCC-CCEEEEECCC T ss_conf 71034089999999981--------79968998145999999983412324128875458999998348-9269984898 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCH Q ss_conf 662257778888887775369730675257888888997203668899886414992 Q gi|254780834|r 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 (648) Q Consensus 325 ~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l 381 (648) .||++++.+.++. ++|+|+|||++++++|++++..+++++.+. T Consensus 73 ~~G~~~~~~~~~~--------------l~~~g~D~~~~~~~~g~~~~~~~i~~a~~~ 115 (118) T 1t6t_1 73 THGERINQKXKEL--------------LSSQGFLVDENFRNFLKKWNIIHIEEINGG 115 (118) T ss_dssp HHHHHHHHHHHHH--------------HHHTTCEEECHHHHHHHHTTCCCGGGC--- T ss_pred HHHHHHHHHHHHH--------------HHHCCCEEEHHHHHHHHHHCHHHHHHHHCC T ss_conf 8899999999999--------------998699442459999988486999865476 No 7 >>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} (A:75-203) Probab=99.59 E-value=3.1e-15 Score=159.19 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=100.4 Q ss_pred CHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHH---HHHCCCCHHHHHHHHHC---CCEEE Q ss_conf 1011081788886433100002356787089971438899987435542113---43213662678988512---68189 Q gi|254780834|r 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS---SLGTALTEYQLRLLWKL---SPRIV 318 (648) Q Consensus 245 ~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va---~~Gtalt~~~~~~l~r~---~~~vv 318 (648) |+.|||++.+.+. +.++||||+||+++++++|+++++| +.|++++..|+..+.++ ..+|| T Consensus 1 s~~ly~~~~~~~~--------------~~i~i~EG~~Dalsl~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~iv 66 (129) T 1q57_A 1 SDALFGKHLWNGG--------------KKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQII 66 (129) T ss_dssp TTCEETGGGCSSE--------------EEEEEESSHHHHHHHTTTTTTCSCEEEESSTTTTHHHHHHTTHHHHHTEEEEE T ss_pred CCCCCCEECCCCC--------------CEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEE T ss_conf 6642040204799--------------98999886689999999658886156157542104889999899863698799 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCH Q ss_conf 961788662257778888887775369730675257888888997203668899886414992 Q gi|254780834|r 319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 (648) Q Consensus 319 l~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l 381 (648) +|||+|+||++|+.|....+ ...-..+.+|+++||+|+++++|.++++..+++++++ T Consensus 67 i~~D~D~aG~~~a~~~~~~~------~~~~~~~~~p~~kD~nd~l~~~~~~~~~~~l~~a~~~ 123 (129) T 1q57_A 67 LMFDMDEAGRKAVEEAAQVL------PAGKVRVAVLPCKDANECHLNGHDREIMEQVWNAGPW 123 (129) T ss_dssp EECCSSHHHHHHHHHHHHHS------CGGGEEECCCSSSSHHHHHTTSCHHHHHHHHTTCCCC T ss_pred EECCCCHHHHHHHHHHHHHC------CCCEEEEEECCCCCCCHHHHHCCCHHHHHHHHHHCCC T ss_conf 96089989999999998755------7755999856656874566642313456787752136 No 8 >>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} (A:138-255) Probab=99.57 E-value=8.5e-15 Score=155.12 Aligned_cols=111 Identities=15% Similarity=0.127 Sum_probs=95.4 Q ss_pred CHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHH---HHHCCCCHHHHHHHHHCC---CEEE Q ss_conf 1011081788886433100002356787089971438899987435542113---432136626789885126---8189 Q gi|254780834|r 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS---SLGTALTEYQLRLLWKLS---PRIV 318 (648) Q Consensus 245 ~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va---~~Gtalt~~~~~~l~r~~---~~vv 318 (648) |+.|||++.+++. ++++||||++|++|++|+|++++|+ ++|++++..|+..+.++. .+|+ T Consensus 1 S~~l~~~~~~~~~--------------~~v~i~EG~~Dals~~~~g~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ii 66 (118) T 1nui_A 1 SDALFGKHLWNGG--------------KKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQII 66 (118) T ss_dssp TTCCTTGGGCCCB--------------SCCEEESSHHHHHHHHHHHTTCSCEECCTTTTTTHHHHHHHTHHHHTTBSCEE T ss_pred CCCCEEEEECCCC--------------CEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE T ss_conf 4632022104687--------------66999788136999999842688654367630121467788888743677599 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHH Q ss_conf 961788662257778888887775369730675257888888997203668899886 Q gi|254780834|r 319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375 (648) Q Consensus 319 l~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll 375 (648) +|||+|.||++++.+..+.+ ...-..+.+|+|+||+|+++++|.++|+++| T Consensus 67 i~~DnD~aG~~~~~~~~~~l------~~~~~~~~~p~~kD~nd~l~~~g~~~~~~~i 117 (118) T 1nui_A 67 LMFDMDEAGRKAVEEAAQVL------PAGKVRVAVLPCKDANECHLNGHDREIMEQV 117 (118) T ss_dssp EECCSSHHHHHHHHHHHHHS------CTTTEEECCCSSSSHHHHHTTTTHHHHHHHH T ss_pred EECCCCHHHHHHHHHHHHHC------CCCCEEEEECCCCCHHHHHHCCCHHHHHHHH T ss_conf 97789989999999999875------7787999508987989998819999999975 No 9 >>1d0q_A DNA primase; zinc-binding motif, protein; HET: DNA; 1.71A {Bacillus stearothermophilus} (A:23-69) Probab=99.56 E-value=2.6e-15 Score=159.80 Aligned_cols=47 Identities=47% Similarity=1.025 Sum_probs=46.0 Q ss_pred HHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCC Q ss_conf 5412221015887777755753458888587879817897467136888878 Q gi|254780834|r 21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72 (648) Q Consensus 21 v~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd 72 (648) ||+||+|+|+|+| |||+||||+||||||+|+|+|++|||||||+||| T Consensus 1 ig~~v~l~~~G~~-----~~~~CPfH~ek~PSf~V~~~k~~~~CFgCg~gGd 47 (47) T 1d0q_A 1 IGEYVQLKRQGRN-----YFGLCPFHGEKTPSFSVSPEKQIFHCFGCGAGGN 47 (47) T ss_dssp HTTTSCCEEETTE-----EEECCSSSCCSSCCEEEETTTTEEEETTTCCEEC T ss_pred HHHCCCEEECCCC-----EEEECCCCCCCCCCEEECCCCCEEEEECCCCCCH T ss_conf 9640786887966-----0787121279887438816841035630036633 No 10 >>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:20-66) Probab=99.55 E-value=3.5e-15 Score=158.62 Aligned_cols=47 Identities=43% Similarity=0.940 Sum_probs=46.0 Q ss_pred HHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCC Q ss_conf 5412221015887777755753458888587879817897467136888878 Q gi|254780834|r 21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72 (648) Q Consensus 21 v~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd 72 (648) ||+||+|+|+|+| ||++||||+||||||+|+|+||+|||||||+||| T Consensus 1 i~~yv~l~~~G~~-----~~~~CPfH~ek~PSf~v~~~k~~~~CFgCg~gGd 47 (47) T 2au3_A 1 ISEYLNLEKVGSN-----YRTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGD 47 (47) T ss_dssp HHHHSCCEEETTE-----EEECCSSSCCSSCCEEEETTTTEEEETTTCCEEC T ss_pred HHHCEEEEECCCE-----EEEECCCCCCCCCCEEEECCCCEEEECCCCCCCC T ss_conf 8626048976974-----7987989999899559988999899658998977 No 11 >>1d0q_A DNA primase; zinc-binding motif, protein; HET: DNA; 1.71A {Bacillus stearothermophilus} (A:1-22,A:70-103) Probab=97.86 E-value=4.4e-05 Score=65.80 Aligned_cols=49 Identities=35% Similarity=0.575 Sum_probs=45.7 Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHC Q ss_conf 87888999998748888875412221015887777755753458888587879817897467136888878989989885 Q gi|254780834|r 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81 (648) Q Consensus 2 ~i~~~~i~~i~~~~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd~~~f~~~~~ 81 (648) +||.+.||+||..+|||+|+ |+|+|++| T Consensus 4 ~ip~e~i~~irr~~div~v~----------------------------------------------------fsflmdie 31 (56) T 1d0q_A 4 RIPEETIEAIRRGVDIVDVA----------------------------------------------------FTFLMDIE 31 (56) T ss_dssp TSCHHHHHHHHHHCCHHHHH----------------------------------------------------HHHHHHHH T ss_pred CCCHHHHHHHHHHCCHHHHH----------------------------------------------------HHHHHHHH T ss_conf 88989999999859999999----------------------------------------------------99999996 Q ss_pred CCCHHHHHHHHHHHHCCCCCC Q ss_conf 999799999999981885877 Q gi|254780834|r 82 GCSFIESVQRLAAIAGVPLPV 102 (648) Q Consensus 82 ~~~f~ea~~~la~~~gi~~~~ 102 (648) |++|.||++.||.++||++.. T Consensus 32 gi~fiea~krla~ka~vdls~ 52 (56) T 1d0q_A 32 GIPFVEAAKRLAAKAGVDLSV 52 (56) T ss_dssp TCCHHHHHHHHHHHHTCCCGG T ss_pred CCCHHHHHHHHHHHHCCCCCC T ss_conf 869999999999996998777 No 12 >>2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication, DNA-binding, endonuclease; 1.90A {Mycobacterium tuberculosis} (A:) Probab=97.63 E-value=0.005 Score=46.91 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=61.5 Q ss_pred CHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH Q ss_conf 30379999999998477889999844300237998899999999999753889998999988511128 Q gi|254780834|r 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 (648) Q Consensus 479 ~~~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l 546 (648) .....|+.+|..|+.+|+.+.++...|...+|.++.++.||..+.+.+.++...+...+...+...+. T Consensus 29 ~~~~aE~~vLg~ll~~p~~~~~v~~~L~~edF~~~~h~~If~~i~~l~~~~~~iD~~~l~~~l~~~~~ 96 (200) T 2r5u_A 29 QDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYGRGEPADAVTVAAELDRRGL 96 (200) T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHTTCCTTCCSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHTTC T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC T ss_conf 88999999999999387279999985899874739999999999999986998765788999877687 No 13 >>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A (A:1-155) Probab=97.40 E-value=0.0089 Score=44.59 Aligned_cols=66 Identities=15% Similarity=0.069 Sum_probs=60.7 Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH Q ss_conf 037999999999847788999984430023799889999999999975388999899998851112 Q gi|254780834|r 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 (648) Q Consensus 480 ~~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~ 545 (648) ..-.|+.+|.+|+.+|+.+.++...+...+|.++.++.||..+.+.+.++...|...+...+...+ T Consensus 13 ~~eaE~~lLg~ll~~~~~~~~v~~~L~~edF~~~~h~~If~ai~~l~~~g~~iD~~~v~~~l~~~~ 78 (155) T 2r6a_A 13 SIEAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLRVADRGEPVDLVTVTAELAASE 78 (155) T ss_dssp CHHHHHHHHHHHHHCGGGHHHHHHHCCGGGCSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHTT T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC T ss_conf 899999999999859626999994059877799899999999999997699999999999986459 No 14 >>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A* (C:1-100) Probab=97.11 E-value=0.0072 Score=45.45 Aligned_cols=90 Identities=13% Similarity=0.126 Sum_probs=66.8 Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 53037999999999847788999984430023799889999999999975388999899998851112899999999986 Q gi|254780834|r 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 (648) Q Consensus 478 ~~~~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~elL~~L~~~~ 557 (648) .....+|+.||+.|+++|+++..+... ...+|.++.++.|+..+...+.++..+++..+...+.++. ..++.++ T Consensus 4 ~~~~~AEr~LL~~ml~~~~~~~~v~~~-~~~~F~~~~yq~i~~~l~~~~~e~~~~~~a~f~~~l~de~-~~~~~~i---- 77 (100) T 2r6a_C 4 PAFQNAERLLLAHXXRSRDVALVVQER-IGGRFNIEEHRALAAYIYAFYEEGHEADPGALISRIPGEL-QPLASEL---- 77 (100) T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH-CCSCCSSHHHHHHHHHHHHHHTTSCCSCHHHHTTTSCSSS-HHHHHHH---- T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHH-HHHHHHH---- T ss_conf 943999999999998794899999977-2246615989999999999984144305889999965111-3669999---- Q ss_pred HHHHHHHCCCCCCHHHHHH Q ss_conf 5433320256899889999 Q gi|254780834|r 558 RDAGLWSATTEANIVDVRQ 576 (648) Q Consensus 558 ~~~~~~~~~~e~~~~d~~e 576 (648) .......+.+.+.+.+ T Consensus 78 ---~~~~~~~e~s~~ei~D 93 (100) T 2r6a_C 78 ---SLLLIADDVSEQELED 93 (100) T ss_dssp ---TTSCCCSSCCHHHHHH T ss_pred ---HHHHCCCCCCHHHHHH T ss_conf ---9987036651788999 No 15 >>1b79_A DNAB helicase; hexamer, DNA replication; 2.30A {Escherichia coli} (A:) Probab=96.86 E-value=0.03 Score=39.67 Aligned_cols=69 Identities=7% Similarity=-0.022 Sum_probs=62.5 Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH Q ss_conf 037999999999847788999984430023799889999999999975388999899998851112899 Q gi|254780834|r 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 (648) Q Consensus 480 ~~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~e 548 (648) ..-.|+.+|..|+.+|+.+.++...+...+|.++.++.||..+.+.+.++...+...+...+...+.-. T Consensus 20 ~~~aE~~vLg~ll~~~~~~~~v~~~L~~edF~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~ 88 (119) T 1b79_A 20 SIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLD 88 (119) T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHTTCCGGGSSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHTTTTHH T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHH T ss_conf 889999999999949408999997659998274989999999999850599988999999998679735 No 16 >>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C (A:) Probab=96.82 E-value=0.036 Score=39.00 Aligned_cols=70 Identities=10% Similarity=-0.059 Sum_probs=62.7 Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 3799999999984778899998443002379988999999999997538899989999885111289999 Q gi|254780834|r 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550 (648) Q Consensus 481 ~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~elL 550 (648) ...|+.+|..++.+|+.+.++...+...+|.++.++.||..+.+.+.++...|...+...+.+.+.-..+ T Consensus 11 ~~aE~~lLg~ll~~~~~~~~v~~~L~~edF~~~~h~~If~~i~~l~~~g~~iD~~tv~~~l~~~~~~~~~ 80 (123) T 3gxv_A 11 QNIERIVLSGIVLANHKIEEVHSVLEPSDFYYPPNGLFFEIALKLHEEDCPIDENFIRQKMPKDKQIKEE 80 (123) T ss_dssp HHHHHHHHHHHHHSGGGHHHHHTTCCGGGCSSHHHHHHHHHHHHHHHTTCCCSHHHHHHTSCSSSCCCHH T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHH T ss_conf 9999999999996972899999668999829898999999999998456888699999999876981431 No 17 >>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} (A:1-152) Probab=96.71 E-value=0.088 Score=35.44 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=58.2 Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH Q ss_conf 03799999999984778899998443-0023799889999999999975388999899998851112 Q gi|254780834|r 480 PSLREAALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 (648) Q Consensus 480 ~~~~E~~LL~llI~~P~l~~~~~e~l-~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~ 545 (648) ....|+.+|..++.+|+.+.++.+.+ ...+|.++.++.||..+.+.+..+...|...+...+...+ T Consensus 9 ~~~aE~~vLg~ll~~~~~~~~~~~~ll~~e~F~~~~h~~If~ai~~l~~~~~~iD~~tv~~~l~~~~ 75 (152) T 2q6t_A 9 SLEAEQSVLGSILLDSDVMDEVEGLLPSPEAFYAEAHRKIYAAMQALRSQGRPVDLVTLSEELSRRG 75 (152) T ss_dssp CHHHHHHHHHHHHHCGGGHHHHHHHCCSGGGCSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC T ss_conf 8999999999998596489999987588653488889999999999996699999999999985568 No 18 >>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} (A:1-154) Probab=96.02 E-value=0.19 Score=32.34 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=54.2 Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH Q ss_conf 37999999999847788999984430023799889999999999975388999899998851112 Q gi|254780834|r 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 (648) Q Consensus 481 ~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~ 545 (648) .-.|+.+|..++.+|+.+.+ -.+...+|.++.++.||..+.+.+.++...+...+...+.... T Consensus 15 ~eaE~~vLg~ll~~~~~~~~--i~L~~edF~~~~h~~If~~i~~l~~~~~~iD~~~l~~~l~~~~ 77 (154) T 3bgw_A 15 EYAEQAVLGSILTEPELIKE--CPLTPEHFSPGKHFNIYFTMQDLDRKGQSVDFTSIAARVGEKL 77 (154) T ss_dssp HHHHHHHHHHHHHSTTHHHH--SCCCGGGSCTTHHHHHHHHHHHHHHTTCCCSHHHHHHHSSTTC T ss_pred HHHHHHHHHHHHCCHHHHHH--CEECHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 99999999999879745644--1008788888899999999999997699999999999986388 No 19 >>1t3w_A DNA primase; DNAG, DNA-directed RNA polymerase, E. coli, DNA replication; HET: DNA MSE; 2.80A {Escherichia coli} (A:1-109) Probab=91.36 E-value=1.2 Score=24.93 Aligned_cols=73 Identities=11% Similarity=0.004 Sum_probs=53.7 Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999847788999984430023799889999999999975388999899998851112899999999986 Q gi|254780834|r 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 (648) Q Consensus 484 E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~elL~~L~~~~ 557 (648) .+.+|.++++||.+...+.+.-.-.....+. -.++..+++.+..++......+.++..+....+.++.+..+. T Consensus 18 ~r~lI~LLLq~P~La~~v~~~~~l~~~~~~g-~~lL~~L~~~~~~~p~~~t~qLLE~~r~t~~~~~L~~LA~~~ 90 (109) T 1t3w_A 18 XRILIGLLVQNPELATLVPPLENLDENKLPG-LGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSXWD 90 (109) T ss_dssp HHHHHHHHHHCGGGGGGCCCCTTSCGGGSTT-HHHHHHHHHHHHTSTTCCHHHHHHTTCSGGGHHHHHHHHHHH T ss_pred HHHHHHHHHHCCHHHHCCCCHHHHHHCCCHH-HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCC T ss_conf 9999999986909775198446675445501-499999999998589998999999981986899999998675 No 20 >>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:1-19,A:67-95) Probab=90.85 E-value=0.3 Score=30.54 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=25.9 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCC Q ss_conf 9899898859997999999999818858 Q gi|254780834|r 73 HLSFLSALLGCSFIESVQRLAAIAGVPL 100 (648) Q Consensus 73 ~~~f~~~~~~~~f~ea~~~la~~~gi~~ 100 (648) +|+||.-+|++++-||...||.|+|+.+ T Consensus 20 aikfvslye~isyfeaa~~lakr~g~kl 47 (48) T 2au3_A 20 AIKFVSLYEDISYFEAALELAKRYGKKL 47 (48) T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHTCCC T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCC T ss_conf 7899999829988999999999708652 No 21 >>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural genomics, PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} (A:1-141) Probab=82.54 E-value=3.4 Score=20.86 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=51.4 Q ss_pred CCCCCCHHHHHCCCCHHHHHHHHH-C-CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCC Q ss_conf 355421134321366267898851-2-68189961788662257778888887775369730675257888888997203 Q gi|254780834|r 289 AGVQNVVSSLGTALTEYQLRLLWK-L-SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 (648) Q Consensus 289 ~G~~n~va~~Gtalt~~~~~~l~r-~-~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~ 366 (648) +|.+--|+++|+.-...-...+.+ + .++|+|.++.+..+....++.. +.+.|.++.++.+++-.|+++..+.- T Consensus 1 ~~M~vli~~iG~~~~~~~~~i~~~~~~~d~v~li~s~~~~~~~~~l~~~-----l~~~~~~~~~~~i~d~~d~~~~~~~i 75 (141) T 1xmx_A 1 NAMAIHVGIIDQDPVRLVTPLLDHRTVSRHIIFIGDHTQTVIYQRLSDV-----LNKRNISTDFFEIPAGSNTSAIKSAI 75 (141) T ss_dssp CTTEEEEEECCSSCHHHHHHHHSTTCCCCEEEEEECGGGHHHHHHHHHH-----HHHTTCEEEEEECCSSSCHHHHHHHH T ss_pred CCEEEEEEEECCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHH-----HHHCCCCEEEEECCCCCCHHHHHHHH T ss_conf 9618999996377221201755478998679999773258899999999-----98659861798457644779999999 No 22 >>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima MSB8} PDB: 2gaj_A* (A:1-35,A:63-127) Probab=78.91 E-value=2.9 Score=21.50 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=55.9 Q ss_pred CEEEEECCHHHHHHHH-HCCCC-CCHHHHHCCCCHHHHHHHHHCCC--EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC Q ss_conf 7089971438899987-43554-21134321366267898851268--18996178866225777888888777536973 Q gi|254780834|r 272 SFIILVEGYMDVLSLC-QAGVQ-NVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 (648) Q Consensus 272 ~~~i~vEGy~Dvi~l~-~~G~~-n~va~~Gtalt~~~~~~l~r~~~--~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~ 347 (648) ..+|+||..--.=.+- -.|-. -|||++| ...|+..|+++.+ .||++-|.|.-|..=++..++. +..... T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---kkk~i~~Lkkl~k~adIIiATD~DREGE~Ia~eIl~~----~~~~kp 78 (100) T 2gai_A 6 KKYIVVESPAKAKTIKSILGNEYEVFASMG---KEKVVEKLKDLAKKGELLIASDMDREGEAIAWHIARV----TNTLGR 78 (100) T ss_dssp -CEEEESCHHHHHHHHHHHGGGSEEEECCS---CHHHHHHHHHHHHHSCEEECCCSSHHHHHHHHHHHHH----HTCTTS T ss_pred CEEEEECCHHHHHHHHHHCCCCCEEEEECC---HHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHH----HCCCCC T ss_conf 579998797999999998094989996146---6999999999846898999489981520999999998----588898 Q ss_pred EEEEECCCCCCHHHHH Q ss_conf 0675257888888997 Q gi|254780834|r 348 VNFVLLSRGEDPDSFI 363 (648) Q Consensus 348 v~vv~LP~G~DPDe~i 363 (648) ++=+.+ ....|.+.. T Consensus 79 vkRl~f-sslT~~~I~ 93 (100) T 2gai_A 79 KNRIVF-SEITPRVIR 93 (100) T ss_dssp SCBCCC-SSCCHHHHH T ss_pred EEEEEE-ECCCHHHHH T ss_conf 058997-107999999 No 23 >>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} (A:1-88,A:598-781) Probab=78.73 E-value=1.5 Score=24.06 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=56.5 Q ss_pred CCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 87089971438899987435542113432136626789885126818996178866225777888888777536973067 Q gi|254780834|r 271 SSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 (648) Q Consensus 271 ~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~v 350 (648) +...+|+-++-- .|...-+|.++|--..-.+.|| .| ..|.+|| T Consensus 47 ~~~~~i~~~~py---------~~g~~HiGH~~~~~~~Dv~~Ry------------------~r---------~~G~~VK- 89 (272) T 1ffy_A 47 NETFILHDGPPY---------ANGNLHMGHALNKILKDFIVRY------------------KT---------MQGFYAK- 89 (272) T ss_dssp SCBCCEECCCCB---------SSSCCCHHHHHHHHHHHHHHHH------------------HH---------TTTCBCS- T ss_pred CCCEEEECCCCC---------CCCCCHHHHHHHHHHHHHHHHH------------------HH---------CCCCCCC- T ss_conf 996899648999---------8887414377888999999999------------------87---------3799665- Q ss_pred EECCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHHHH Q ss_conf 5257888888997203668899886414992799999 Q gi|254780834|r 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387 (648) Q Consensus 351 v~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l~dFl~~ 387 (648) .+-++.||++++.++|+|+++-++-.+.+..|+-|. T Consensus 90 -SlGN~V~p~e~l~~yg~D~lR~~Ll~~~~~~d~~fs 125 (272) T 1ffy_A 90 -SLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRIS 125 (272) T ss_dssp -SSSCCCCHHHHHHHTCHHHHHHHHHTSCTTSCEECC T ss_pred -CCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCCCC T ss_conf -577876621103556864899999736865578644 No 24 >>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* (C:1-161,C:205-230) Probab=78.41 E-value=4.4 Score=19.79 Aligned_cols=67 Identities=15% Similarity=0.302 Sum_probs=38.8 Q ss_pred CCCCHHHHHCCCCHH-HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH------HHHHCCCCEEEEECCCCCCHHHHH Q ss_conf 542113432136626-7898851268189961788662257778888887------775369730675257888888997 Q gi|254780834|r 291 VQNVVSSLGTALTEY-QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVL------CHLIPGNRVNFVLLSRGEDPDSFI 363 (648) Q Consensus 291 ~~n~va~~Gtalt~~-~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l------~~l~~g~~v~vv~LP~G~DPDe~i 363 (648) |.+-+..+|+.+... ++..| || .+|+|+-|.|.-|.. .|++-+.. ++++.|. |+ +..|..++||.+- T Consensus 97 i~~l~~alG~~~~~~~d~~~l-RY-gkIiImtDaD~DG~H--I~~Llltff~~~~p~Li~~G~-vy-ia~p~~~~~~~l~ 170 (187) T 3k9f_C 97 INTMIYTIGAGVGADFSIEDA-NY-DKIIIMTDADTDGAH--IQTLLLTFFYRYMRPLVEAGH-VY-IALPGEMNADQLW 170 (187) T ss_dssp HHHHHHHHCSCC--CCCCC-C-CC-SEEEEECCSSHHHHH--HHHHHHHHHHHTSHHHHHTTC-EE-EECCGGSCHHHHH T ss_pred HHHHHHHCCCCCCCCCCCCCC-CC-CEEEEEECCCCCCHH--HHHHHHHHHHHHHHHHCCCCC-EE-EECCCCCCHHHHH T ss_conf 767876406667887876546-76-707998579876221--577999999987498702894-56-7538768988999 No 25 >>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} (A:66-137) Probab=76.62 E-value=3 Score=21.39 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=32.9 Q ss_pred HHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCC Q ss_conf 455420599734523201210034654100001671688897077858885010014 Q gi|254780834|r 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 (648) Q Consensus 170 ~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~ 226 (648) +..|.+.|++++.-.+.|......+|. ++ .++|.+|..|++||.--|-=+ T Consensus 13 y~~L~~RgiteeTCrK~gY~V~~~~g~-~v------qva~Y~D~~G~lVaQKvR~k~ 62 (72) T 1nui_A 13 YSALTARGISKETCQKAGYWIAKVDGV-MY------QVADYRDQNGNIVSQKVRDKD 62 (72) T ss_dssp CCCBGGGTBCHHHHHHHTEEEEEETTE-EE------EEEEEECTTSCEEEEEEECTT T ss_pred HHHHHHCCCCHHHHHHCEEEEEECCCC-EE------EEEEEECCCCCEEEEEEECCC T ss_conf 335757789989963155999964992-47------998656799988645762045 No 26 >>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} (A:1-74) Probab=75.63 E-value=3.5 Score=20.69 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=33.2 Q ss_pred HHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCC Q ss_conf 455420599734523201210034654100001671688897077858885010014 Q gi|254780834|r 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 (648) Q Consensus 170 ~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~ 226 (648) +..|...|++++.-.+.|..+...+|. ++ .++|.+|..|++|+.--|-=+ T Consensus 15 y~~L~aRgIteeTCrK~gY~V~~~~g~-~v------qva~Y~D~~G~lVaQKvR~k~ 64 (74) T 1q57_A 15 YSALTARGISKETCQKAGYWIAKVDGV-MY------QVADYRDQNGNIVSQKVRDKD 64 (74) T ss_dssp CCCBTTTTBCHHHHHHHTEEECCBTTB-CE------EEEEEECTTSCEEEEEEEETT T ss_pred CCHHHHCCCCHHHHHHCCEEEECCCCC-EE------EEEEEECCCCCEEEEEEECCC T ss_conf 111432998999999749078613992-78------996458979949999975799 No 27 >>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} (A:1-43,A:99-124) Probab=72.85 E-value=2.6 Score=21.94 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=16.6 Q ss_pred EC-CCCCCCCCCEEEECCCCEEEECCCCC Q ss_conf 34-58888587879817897467136888 Q gi|254780834|r 42 CC-PFHDEKTPSFHCNDSKGFYYCFSCHV 69 (648) Q Consensus 42 ~c-Pfh~ektpsf~v~~~~~~~~cf~c~~ 69 (648) .| ||-++-- .-..+.|+|+|-+||. T Consensus 3 FcsPFtGeyy---~n~~e~GvYvC~~Cg~ 28 (69) T 2kao_A 3 FCSFFGGEVF---QNHFEPGVYVCAKCSY 28 (69) T ss_dssp CCCCCCSCTT---TTCCCCCEEEESSSCC T ss_pred CCCCCCCCHH---CCCCCCEEEEECCCCC T ss_conf 4346557210---2889985999479996 No 28 >>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics, phosphoprotein phosphatase; 3.30A {Arabidopsis thaliana} (A:) Probab=70.16 E-value=3 Score=21.31 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=42.3 Q ss_pred EEECCCCCCCCCCEEE--------------ECCCC-EEEEC-CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 7534588885878798--------------17897-46713-6888878989989885999799999999981 Q gi|254780834|r 40 WACCPFHDEKTPSFHC--------------NDSKG-FYYCF-SCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 (648) Q Consensus 40 ~~~cPfh~ektpsf~v--------------~~~~~-~~~cf-~c~~~gd~~~f~~~~~~~~f~ea~~~la~~~ 96 (648) .-.-|+-+..+|+... .+.+. .-||- |+|.+|-++-++|...|+++.+|+..+..+- T Consensus 60 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~VlVHC~~G~~RS~~via~~m~~~g~s~~~A~~~v~~~R 132 (151) T 1xri_A 60 LFQFGIEGNKEPFVNIPDHKIRXALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSIFDEYQRFA 132 (151) T ss_dssp EEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECSSSSSHHHHHHHHHHHHTTBCHHHHHHHHHHHH T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC T ss_conf 5346742343432001099999999999716699888776899507899999999994999999999999976 No 29 >>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3gb8_A (A:558-768) Probab=66.73 E-value=7.6 Score=17.63 Aligned_cols=80 Identities=11% Similarity=0.089 Sum_probs=62.2 Q ss_pred CCHHHHHHCCCHHHHHHHHHHC------------CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 8888997203668899886414------------9927999999985302331457999999999885417998999999 Q gi|254780834|r 357 EDPDSFIRCYGKTAFEKLIVES------------LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 (648) Q Consensus 357 ~DPDe~ir~~G~eaf~~ll~~A------------~~l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~y 424 (648) .||+.-|+.+...+|..+.+++ .|+++-+++.+..-...-.+..+..+...+-.++..+++...+..| T Consensus 19 ~d~~~~Vqe~A~~Al~~iae~~~~~~~~~~~~~~~p~l~~ii~~l~~~~~~l~~~~~~~~~e~i~~i~~~v~~~~~~~~~ 98 (211) T 3gjx_A 19 HETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHL 98 (211) T ss_dssp TCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH T ss_conf 18988999999999999999999998641403547899999999888875279999999999999999806746568999 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999988765 Q gi|254780834|r 425 SQAIRDRLQQLF 436 (648) Q Consensus 425 l~~la~~L~~~~ 436 (648) +..+-..+.... T Consensus 99 ~~~lm~~l~~~~ 110 (211) T 3gjx_A 99 IEKYMLLPNQVW 110 (211) T ss_dssp HHHHTHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999998889999 No 30 >>1d3y_A DNA topoisomerase VI A subunit; DNA binding protein, SPO11 homolog; HET: DNA; 2.00A {Methanococcus jannaschii} (A:76-301) Probab=64.70 E-value=6.3 Score=18.40 Aligned_cols=95 Identities=20% Similarity=0.189 Sum_probs=52.5 Q ss_pred CCCEEEEECCHHHHHHHHHCCCCC----C-HHHHHC--CCCHHHHHHHHHC-CCEEEEEECCCCCC-HHHHH--HHHHHH Q ss_conf 787089971438899987435542----1-134321--3662678988512-68189961788662-25777--888888 Q gi|254780834|r 270 SSSFIILVEGYMDVLSLCQAGVQN----V-VSSLGT--ALTEYQLRLLWKL-SPRIVLCFDGDDPG-LRAAY--KAIDLV 338 (648) Q Consensus 270 ~~~~~i~vEGy~Dvi~l~~~G~~n----~-va~~Gt--alt~~~~~~l~r~-~~~vvl~fDgD~AG-~kAa~--Ra~e~~ 338 (648) ..+.+++||=..=.-.|.+.++.. . |-.-|- ..|..=++.|.+- .-.++.+.|+|.+| ...+. +..-.. T Consensus 46 ~~~~VlvVEk~avF~~L~~~~~~~~~~~ilIt~kGyPd~~tr~~l~~L~~~~~~p~~~~~D~Dp~G~~~I~~~y~~gs~~ 125 (226) T 1d3y_A 46 DADFILAIETSGMFARLNAERFWDKHNCILVSLKGVPARATRRFIKRLHEEHDLPVLVFTDGDPYGYLNIYRTLKVGSGK 125 (226) T ss_dssp CCSEEEEESCHHHHHHHHHTTHHHHTTEEEEECCSSCCHHHHHHHHHHHHHHTCCEEEECCBSHHHHHTHHHHHHC---- T ss_pred CCCEEEEEEEHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCC T ss_conf 46689999632089999864755225566872788896899999999866219987999758861089999999961122 Q ss_pred HHHHHCCCCEEEEEC-CCCCCHHHHHHCC Q ss_conf 777536973067525-7888888997203 Q gi|254780834|r 339 LCHLIPGNRVNFVLL-SRGEDPDSFIRCY 366 (648) Q Consensus 339 l~~l~~g~~v~vv~L-P~G~DPDe~ir~~ 366 (648) ... ....+.+-.| |-|.+|+++.+.. T Consensus 126 ~~~--~~~~~~~p~l~~~g~~~~~~~~~~ 152 (226) T 1d3y_A 126 AIH--LADKLSIPAARLIGVTPQDIIDYD 152 (226) T ss_dssp -------CTTCCTTCEEEESCHHHHHHTT T ss_pred CCC--CCCCCCCCCCEECCCCHHHHHHCC T ss_conf 321--121234777779047799974015 No 31 >>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} (A:67-175) Probab=64.64 E-value=8.2 Score=17.32 Aligned_cols=84 Identities=19% Similarity=0.157 Sum_probs=55.9 Q ss_pred CCCCEEEEECCHHHHHHHHHCCCCCCH-HHHHC------CCCHHHHH---HHHHC--CCEEEEEECCCCCCHHHHHHHHH Q ss_conf 678708997143889998743554211-34321------36626789---88512--68189961788662257778888 Q gi|254780834|r 269 NSSSFIILVEGYMDVLSLCQAGVQNVV-SSLGT------ALTEYQLR---LLWKL--SPRIVLCFDGDDPGLRAAYKAID 336 (648) Q Consensus 269 ~~~~~~i~vEGy~Dvi~l~~~G~~n~v-a~~Gt------alt~~~~~---~l~r~--~~~vvl~fDgD~AG~kAa~Ra~e 336 (648) +..+.+.|||-.-|++++-+.|+-+.+ =.||. ..+++++. ++.|. .++|||++...--|+--|.=..+ T Consensus 11 Rd~~~lcVVE~~~Di~~iE~s~~y~G~YhVL~g~isp~~gi~p~~l~~~~L~~r~~~i~EvIlA~s~t~EGe~Ta~yi~~ 90 (109) T 1vdd_A 11 RDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQR 90 (109) T ss_dssp SCTTEEEEESSHHHHHHTTTTSSCCSEEEECSSCCBGGGTBCTTTSTTGGGGGGCCTTCEEEECCCSSHHHHHHHHHHHH T ss_pred CCCCEEEEEECHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH T ss_conf 77526999956899899985122221042305744734488852011256677624776799982698650899999999 Q ss_pred HHHHHHHCCCCEEEEECCCCC Q ss_conf 887775369730675257888 Q gi|254780834|r 337 LVLCHLIPGNRVNFVLLSRGE 357 (648) Q Consensus 337 ~~l~~l~~g~~v~vv~LP~G~ 357 (648) + -....++|-.|-.|. T Consensus 91 ~-----lk~~~ikvtrlA~Gi 106 (109) T 1vdd_A 91 L-----LEPLGAAISRIAYGV 106 (109) T ss_dssp H-----HTTSSCEEEECCBCB T ss_pred H-----HHHCCCEEEEECCCC T ss_conf 8-----423496187602268 No 32 >>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol phosphatase, hydrolase; 2.30A {Mitsuokella multacida} (A:349-420,A:490-629) Probab=63.19 E-value=8.6 Score=17.11 Aligned_cols=90 Identities=12% Similarity=0.043 Sum_probs=52.8 Q ss_pred HHHHHHHHHC--CHHHH--HHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEE----------C-C-CCEEEE-CCCC Q ss_conf 8999998748--88887--541222101588777775575345888858787981----------7-8-974671-3688 Q gi|254780834|r 6 DFIKDLLIHI--PISNL--IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN----------D-S-KGFYYC-FSCH 68 (648) Q Consensus 6 ~~i~~i~~~~--~i~~v--v~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~----------~-~-~~~~~c-f~c~ 68 (648) ..+..|++++ +|+.| =-+.-..++.|-. | --.|+-+...|+...- + + +=..|| -|.| T Consensus 52 ~~~~~~~~~~~~~~~~~dlr~e~e~~~~~gi~-----y-~~i~~~D~~~P~~e~i~~~v~~i~~~~~~~~VlVHC~aG~G 125 (212) T 3f41_A 52 AMLPVLKQQAKGPIYIMDLRQEQQLVEKNGLH-----Y-YRIAATDHIWPSAANIDEFINFTRTMPANAWLHFHCQAGAG 125 (212) T ss_dssp HHHHHHHHHCCSCEEEEEEECHHHHHHHTTCE-----E-EEEEECTTSCCCHHHHHHHHHHHHHSCTTCEEEEECSSSSH T ss_pred HHHHHHCCCCCCCEEEEECCCHHHHHHCCCCE-----E-EEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC T ss_conf 99998443789848999888799997368963-----8-98436767798878999999999738898559998899987 Q ss_pred CCCCHHHHH-H-HHCCCCHHHHHHHHHHHHCCCCC Q ss_conf 887898998-9-88599979999999998188587 Q gi|254780834|r 69 VKGDHLSFL-S-ALLGCSFIESVQRLAAIAGVPLP 101 (648) Q Consensus 69 ~~gd~~~f~-~-~~~~~~f~ea~~~la~~~gi~~~ 101 (648) ..|-++... | +..++++.||+..+...-+.-++ T Consensus 126 RTgtvia~yli~~~~~~s~~eai~~ir~~R~~~~~ 160 (212) T 3f41_A 126 RTTAYMAMYDMMKNPDVSLGDILSRQYLLGGNYVA 160 (212) T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHTSCCTT T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHH T ss_conf 89899999998747771278999999885530222 No 33 >>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine phosphatase, P-loop, hydrolase; HET: PO4; 1.50A {Autographa californicanucleopolyhedrovirus} (A:) Probab=62.73 E-value=4.6 Score=19.60 Aligned_cols=24 Identities=8% Similarity=-0.190 Sum_probs=12.6 Q ss_pred CCEEEEEECCCCCCHHHHHHHHHH Q ss_conf 681899617886622577788888 Q gi|254780834|r 314 SPRIVLCFDGDDPGLRAAYKAIDL 337 (648) Q Consensus 314 ~~~vvl~fDgD~AG~kAa~Ra~e~ 337 (648) .+.+++.-..+.-|+-+++=++.+ T Consensus 112 ~~~~v~VHC~~G~gRSgt~i~a~l 135 (169) T 1yn9_A 112 PGMLVGVHCTHGINRTGYMVCRYL 135 (169) T ss_dssp TTSEEEEECSSSSHHHHHHHHHHH T ss_pred CCCEEEEEECCCCCCHHHHHHHHH T ss_conf 998599996047785699999999 No 34 >>3iac_A Glucuronate isomerase; IDP02065, structural genomics, center for structural genomics of infectious diseases, csgid; 2.22A {Salmonella typhimurium} (A:28-49,A:143-237) Probab=62.15 E-value=9 Score=16.96 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=13.6 Q ss_pred HHHHCCCCHHHHHHHHHHHHCCCC Q ss_conf 898859997999999999818858 Q gi|254780834|r 77 LSALLGCSFIESVQRLAAIAGVPL 100 (648) Q Consensus 77 ~~~~~~~~f~ea~~~la~~~gi~~ 100 (648) +|+.++-+|.+-|..|++.+|+++ T Consensus 73 al~i~~~~f~~yv~kL~e~sg~~I 96 (117) T 3iac_A 73 VFKIELDGFVDYLRKLEAAADVSI 96 (117) T ss_dssp HHCTTSTTHHHHHHHHHHHHTCCC T ss_pred HCCCCCHHHHHHHHHHHHHHCCCC T ss_conf 026561659999999999859886 No 35 >>2vbc_A Dengue 4 NS3 FULL-length protein; transmembrane, RNA replication, NS2B-NS3 protease; 3.15A {Dengue virus type 4} (A:88-175) Probab=61.81 E-value=5.3 Score=19.07 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=15.9 Q ss_pred EEEEECCCCEEEEECCCCC Q ss_conf 8897077858885010014 Q gi|254780834|r 208 FPIRSSRGQVIAFGGRTLS 226 (648) Q Consensus 208 fPi~~~~g~~i~f~gR~l~ 226 (648) =||.|..|+|||+.|-=+- T Consensus 50 SPIin~~G~VvGLYGNGv~ 68 (88) T 2vbc_A 50 SPIINKKGKVIGLYGNGVV 68 (88) T ss_dssp CEEECSSSSEEEEEECCCC T ss_pred CCCCCCCCCEEEEEEEEEE T ss_conf 8738899968998601788 No 36 >>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens} (A:) Probab=60.65 E-value=5.9 Score=18.66 Aligned_cols=60 Identities=10% Similarity=0.016 Sum_probs=45.1 Q ss_pred CEEEECCCCCCCCCCEEE------------ECCCC-EEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHHC Q ss_conf 557534588885878798------------17897-46713-6888878-9899898859997999999999818 Q gi|254780834|r 38 DYWACCPFHDEKTPSFHC------------NDSKG-FYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIAG 97 (648) Q Consensus 38 ~~~~~cPfh~ektpsf~v------------~~~~~-~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~g 97 (648) -..-..|+++..+|+..- ...+. .-||- |+|.+|- +.-++|...++++.+|++.+.++-. T Consensus 57 i~~~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~VlVHC~~G~~Rsg~~~~~~Lm~~~~~~~~~a~~~ir~~R~ 131 (151) T 2img_A 57 LTLHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTXLACYLVKERGLAAGDAIAEIRRLRP 131 (151) T ss_dssp SEEEECCCCTTCCCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHST T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC T ss_conf 599955642689979999999999999988449819998278876479999999998619899999999998788 No 37 >>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specificity phosphatase; 1.88A {Homo sapiens} (A:1-147) Probab=60.38 E-value=6 Score=18.59 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=23.7 Q ss_pred EEEE-CCCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 4671-36888878-989989885999799999999981 Q gi|254780834|r 61 FYYC-FSCHVKGD-HLSFLSALLGCSFIESVQRLAAIA 96 (648) Q Consensus 61 ~~~c-f~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~ 96 (648) .-|| -|.|.+|- ++-++|...++++.||++.+-.+- T Consensus 107 lVHC~~G~~RS~~vv~ayLm~~~~~~~~~A~~~v~~~R 144 (147) T 2wgp_A 107 LVHCAAGVSRSATLCIAYLMKFHNVCLLEAYNWVKARR 144 (147) T ss_dssp EEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHC T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHC T ss_conf 98887656508999999999983999999999999979 No 38 >>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus} (A:) Probab=60.05 E-value=7.6 Score=17.63 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=44.8 Q ss_pred HHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEE------------ECCCC-EEEEC-CCCCCCCHH-HHHHHHCCCCHH Q ss_conf 4122210158877777557534588885878798------------17897-46713-688887898-998988599979 Q gi|254780834|r 22 GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC------------NDSKG-FYYCF-SCHVKGDHL-SFLSALLGCSFI 86 (648) Q Consensus 22 ~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v------------~~~~~-~~~cf-~c~~~gd~~-~f~~~~~~~~f~ 86 (648) .+.-.....+- .|..+.++.+...|.... ...+. .-||- |.+.+|-++ -++|...|+++. T Consensus 46 ~e~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yLm~~~~~~~~ 120 (164) T 2hcm_A 46 RQQPGPRAPGV-----AELRVPVFDDPAEDLLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSRSAAVCTAYLMRHRGHSLD 120 (164) T ss_dssp SSCCCCCCTTC-----EEEECCCCSCTTSCCHHHHHHHHHHHHHHHHTTCEEEEEESSSSHHHHHHHHHHHHHHSCCCHH T ss_pred CCCCCCCCCCC-----EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCCCHH T ss_conf 25664568886-----5999705788435431117999999988875133079984577860799999999998696999 Q ss_pred HHHHHHHHHHCCC Q ss_conf 9999999981885 Q gi|254780834|r 87 ESVQRLAAIAGVP 99 (648) Q Consensus 87 ea~~~la~~~gi~ 99 (648) ||++.+..+-..- T Consensus 121 eAl~~v~~~r~~~ 133 (164) T 2hcm_A 121 RAFQMVKSARPVA 133 (164) T ss_dssp HHHHHHHHHCTTC T ss_pred HHHHHHHHHCCCC T ss_conf 9999999989977 No 39 >>2zbk_A Type II DNA topoisomerase VI subunit A; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} (A:154-389) Probab=60.05 E-value=6.4 Score=18.31 Aligned_cols=98 Identities=15% Similarity=0.017 Sum_probs=54.6 Q ss_pred CCEEEEECCHHHHHHHHHCCCC---CCHHHHHC----CCCHHHHHHHHHCCC-EEEEEECCCCCCHHHHHHHHHHHHHHH Q ss_conf 8708997143889998743554---21134321----366267898851268-189961788662257778888887775 Q gi|254780834|r 271 SSFIILVEGYMDVLSLCQAGVQ---NVVSSLGT----ALTEYQLRLLWKLSP-RIVLCFDGDDPGLRAAYKAIDLVLCHL 342 (648) Q Consensus 271 ~~~~i~vEGy~Dvi~l~~~G~~---n~va~~Gt----alt~~~~~~l~r~~~-~vvl~fDgD~AG~kAa~Ra~e~~l~~l 342 (648) ...+++||=..=.-.|.+.++. +++...|- .-|..=++.|.+-.. .++.+.|.|..|..=+..-........ T Consensus 49 ~~~VlvVEn~~~F~~L~~~~~~~~~~~ilI~~~G~p~~~tr~ll~~L~~~~~~~i~~~gD~Dp~Gl~I~~~~~~~~~~~~ 128 (236) T 2zbk_A 49 AEFVLVVEKDAVFQQLHRAGFWKQYKSILITSAGQPDRATRRFVRRLNEELKLPVYILTDADPYGWYIFSVFRIGSISLS 128 (236) T ss_dssp CSCEEEESCHHHHHHHHTTTHHHHTTCEEEECCSSCCTTHHHHHHHHHHHSCCCEEEECCSSHHHHHHHHHHTSCSCC-- T ss_pred CCEEEEEECCHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCC T ss_conf 66899992523899998616343367468956888987999999999753288779996688138899999974133223 Q ss_pred HCCCCEEEEEC-CCCCCHHHHHHCCCH Q ss_conf 36973067525-788888899720366 Q gi|254780834|r 343 IPGNRVNFVLL-SRGEDPDSFIRCYGK 368 (648) Q Consensus 343 ~~g~~v~vv~L-P~G~DPDe~ir~~G~ 368 (648) -..-.+.+-.+ |-|+||.++.+.... T Consensus 129 ~~~~~~~~p~l~~~g~~~~~~~~~~~~ 155 (236) T 2zbk_A 129 YESERLATPDAKFLGVSMGDIFGNSRK 155 (236) T ss_dssp ---CCCSCSSCEECCCCHHHHHCCSSS T ss_pred CCCCCCCCCCCEEECCCHHHHHHCCCC T ss_conf 101246688508931659997412567 No 40 >>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} (A:1-39,A:149-206,A:316-372) Probab=58.79 E-value=5.9 Score=18.60 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=11.1 Q ss_pred HHHHHCCCCHHHHCCCCCCC Q ss_conf 99985068853510124422 Q gi|254780834|r 142 YYLDERGIDSHAIEMFKLGY 161 (648) Q Consensus 142 ~yl~~Rg~~~~~~~~f~lG~ 161 (648) .||.++|++--.+++..++. T Consensus 19 ~~l~~~g~~v~~~e~~~~~~ 38 (154) T 2uzz_A 19 YYATRAGLNVLMTDAHMPPH 38 (154) T ss_dssp HHHHHTTCCEEEECSSCSSS T ss_pred HHHHHCCCCEEEEECCCCCC T ss_conf 99997899589993899985 No 41 >>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} (A:) Probab=58.50 E-value=2.6 Score=21.87 Aligned_cols=11 Identities=45% Similarity=0.996 Sum_probs=8.8 Q ss_pred EECCCCCCCCH Q ss_conf 71368888789 Q gi|254780834|r 63 YCFSCHVKGDH 73 (648) Q Consensus 63 ~cf~c~~~gd~ 73 (648) -||+||+.|.+ T Consensus 4 vcfscgktghi 14 (26) T 1dsq_A 4 VCFSCGKTGHI 14 (26) T ss_dssp BCTTTCCBSSC T ss_pred EEEECCCCCCC T ss_conf 77756876651 No 42 >>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA; 1.67A {Homo sapiens} (A:1-128) Probab=57.73 E-value=6.4 Score=18.29 Aligned_cols=36 Identities=11% Similarity=0.215 Sum_probs=28.1 Q ss_pred EEEECC-CCCCC-CHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 467136-88887-8989989885999799999999981 Q gi|254780834|r 61 FYYCFS-CHVKG-DHLSFLSALLGCSFIESVQRLAAIA 96 (648) Q Consensus 61 ~~~cf~-c~~~g-d~~~f~~~~~~~~f~ea~~~la~~~ 96 (648) +.||-+ .|.+| =++-++|..+|+++.+|++.+..+- T Consensus 89 lVHC~~G~~RS~~i~~ayLm~~~~~s~~~A~~~v~~~R 126 (128) T 2e0t_A 89 LVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHR 126 (128) T ss_dssp EEECSSSSHHHHHHHHHHHHHHSCCCHHHHHHHHHHTS T ss_pred EEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHC T ss_conf 99844568608999999999860999999999999828 No 43 >>1svp_A Sindbis virus capsid protein; chymotrypsin-like serine, mutant, coat protein, viral protein; 2.00A {Sindbis virus} (A:1-72) Probab=56.93 E-value=7.3 Score=17.80 Aligned_cols=23 Identities=22% Similarity=0.536 Sum_probs=18.6 Q ss_pred EEEEEEECCCCEEE----EECCCCCCC Q ss_conf 68889707785888----501001465 Q gi|254780834|r 206 LIFPIRSSRGQVIA----FGGRTLSKG 228 (648) Q Consensus 206 i~fPi~~~~g~~i~----f~gR~l~~~ 228 (648) =+|||.++.|+|+| .|||++.+- T Consensus 9 ~~F~v~~~dG~V~GyA~~vggkv~KP~ 35 (72) T 1svp_A 9 RLFDVKNEDGDVIGHALAMEGKVMKPL 35 (72) T ss_dssp SEEEEECTTSCEEEEEEEETTEEEEET T ss_pred CCCCCCCCCCCEEEEEEEECCEEECCC T ss_conf 656533247836788899747640232 No 44 >>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} (X:1-32,X:89-156) Probab=56.85 E-value=11 Score=16.26 Aligned_cols=85 Identities=22% Similarity=0.251 Sum_probs=55.9 Q ss_pred CEEEEECCHHHHHHHH-HCCCCCCH-HHHHCCCCHHHHHHHHHC---CCEEEEEECCCCCCHHHHHHHHHHHHHHHHC-C Q ss_conf 7089971438899987-43554211-343213662678988512---6818996178866225777888888777536-9 Q gi|254780834|r 272 SFIILVEGYMDVLSLC-QAGVQNVV-SSLGTALTEYQLRLLWKL---SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP-G 345 (648) Q Consensus 272 ~~~i~vEGy~Dvi~l~-~~G~~n~v-a~~Gtalt~~~~~~l~r~---~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~-g 345 (648) +.+++||...-+-... ..|-..|| .+.| ...|+..|+++ +++||+|-|.|.=|..=++..++.+ .. + T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kk~l~~Ikkl~k~ad~IIiATD~DREGE~Ia~eI~~~~----~~~~ 75 (100) T 1mw9_X 3 KALVIVESPAKAKTINKYLGSDYVVKSSVG---KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVI----GGDD 75 (100) T ss_dssp CEEEEESCHHHHHHHHTTSCTTEEEEECCS---CHHHHHHHHHHHHTCSEEEECCCSSHHHHHHHHHHHHHH----CSCG T ss_pred CEEEEECCHHHHHHHHHHHCCCCEEEECCC---HHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHH----CCCC T ss_conf 839998989999999998299989995467---799999999998459999988898733539999999996----6899 Q ss_pred CCEEEEECCCCCCHHHHHH Q ss_conf 7306752578888889972 Q gi|254780834|r 346 NRVNFVLLSRGEDPDSFIR 364 (648) Q Consensus 346 ~~v~vv~LP~G~DPDe~ir 364 (648) ..++=+.+ ....|++..+ T Consensus 76 k~vkRl~f-sslT~~~I~~ 93 (100) T 1mw9_X 76 ARYSRVVF-NEITKNAIRQ 93 (100) T ss_dssp GGEEECCC-SSCSHHHHHH T ss_pred CCEEEEEE-CCCCHHHHHH T ss_conf 86599996-6689999999 No 45 >>2fp7_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, substrate-based inhibitor, viral protein/protease complex; HET: NDL; 1.68A {West nile virus} (B:) Probab=55.74 E-value=7.1 Score=17.88 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=14.6 Q ss_pred EEEECCCCEEEEECCCC Q ss_conf 89707785888501001 Q gi|254780834|r 209 PIRSSRGQVIAFGGRTL 225 (648) Q Consensus 209 Pi~~~~g~~i~f~gR~l 225 (648) ||.|..|+|||+.|--+ T Consensus 123 PIin~~G~VVGLYGNGv 139 (172) T 2fp7_B 123 PIVDKNGDVIGLYGNGV 139 (172) T ss_dssp EEECTTSCEEEESCCEE T ss_pred CEECCCCCEEEEECCEE T ss_conf 63745896999853549 No 46 >>2q01_A Uronate isomerase; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics; 2.34A {Caulobacter crescentus CB15} (A:35-55,A:154-246) Probab=55.06 E-value=11 Score=16.03 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=11.6 Q ss_pred HHHCCCCHHHHHHHHHHHHCCCC Q ss_conf 98859997999999999818858 Q gi|254780834|r 78 SALLGCSFIESVQRLAAIAGVPL 100 (648) Q Consensus 78 ~~~~~~~f~ea~~~la~~~gi~~ 100 (648) |+.++-+|.+-|+.|++.+|+++ T Consensus 71 l~i~~~~f~~yi~kL~~~sg~~I 93 (114) T 2q01_A 71 IDFEDERSPRAFERFAETSGQDV 93 (114) T ss_dssp TCTTCTTHHHHHHHHHHHHTSCT T ss_pred CCCCCCCHHHHHHHHHHHCCCCC T ss_conf 26677107999999999709886 No 47 >>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} (A:478-588) Probab=54.76 E-value=11 Score=15.99 Aligned_cols=80 Identities=10% Similarity=-0.008 Sum_probs=60.4 Q ss_pred CCCCHHHHHHCCCHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 888888997203668899886414--992799999998530233145799999999988541799899999999999998 Q gi|254780834|r 355 RGEDPDSFIRCYGKTAFEKLIVES--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432 (648) Q Consensus 355 ~G~DPDe~ir~~G~eaf~~ll~~A--~~l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~yl~~la~~L 432 (648) .=.|||..+|.....++..+...- ....+.++..+.+...-+++.-|..+..-+..++..+++.......+..+...+ T Consensus 11 ~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l 90 (111) T 1b3u_A 11 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLT 90 (111) T ss_dssp TTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHT T ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHC T ss_conf 86499878999999999999998596878999999999886999879999999999999987080758999999999976 Q ss_pred HH Q ss_conf 87 Q gi|254780834|r 433 QQ 434 (648) Q Consensus 433 ~~ 434 (648) .. T Consensus 91 ~d 92 (111) T 1b3u_A 91 QD 92 (111) T ss_dssp TC T ss_pred CC T ss_conf 79 No 48 >>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (J:) Probab=54.58 E-value=12 Score=15.97 Aligned_cols=30 Identities=37% Similarity=0.575 Sum_probs=17.2 Q ss_pred EECCCCC-CCCHH-HHHHHHCC--CCHHHHHHHH Q ss_conf 7136888-87898-99898859--9979999999 Q gi|254780834|r 63 YCFSCHV-KGDHL-SFLSALLG--CSFIESVQRL 92 (648) Q Consensus 63 ~cf~c~~-~gd~~-~f~~~~~~--~~f~ea~~~l 92 (648) .||+||+ =||.+ .|....+. .+-.+|+-.| T Consensus 6 RCFTCGkvig~~we~y~~~~~~ge~~~~~~LD~L 39 (70) T 1twf_J 6 RCFSCGKVVGDKWESYLNLLQEDELDEGTALSRL 39 (70) T ss_dssp BCTTTCCBCTTCHHHHHHHHHTSCCCHHHHHHHT T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHC T ss_conf 6578986818889999999970798788999984 No 49 >>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB: 2i6i_A 2i6m_A 2i6o_A* 2dxp_A* 2i6p_A* (A:) Probab=52.77 E-value=7.2 Score=17.83 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=28.4 Q ss_pred EEEEC-CCCCCCCHH-HHHHHHCCCCHHHHHHHHHHHHCCCC Q ss_conf 46713-688887898-99898859997999999999818858 Q gi|254780834|r 61 FYYCF-SCHVKGDHL-SFLSALLGCSFIESVQRLAAIAGVPL 100 (648) Q Consensus 61 ~~~cf-~c~~~gd~~-~f~~~~~~~~f~ea~~~la~~~gi~~ 100 (648) .-||- |+|.+|-++ -++|...+++..+|++.+-.+=..-+ T Consensus 93 lVHC~~G~gRSg~~~~~yl~~~~~~~~~~a~~~lr~~R~~~i 134 (161) T 2i6j_A 93 LVHCVGGIGRTGTILASYLILTEGLEVESAIDEVRLVRPGAV 134 (161) T ss_dssp EEECSSSSHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCS T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC T ss_conf 999724767069999999999827999999999998689998 No 50 >>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens} (A:) Probab=51.58 E-value=13 Score=15.59 Aligned_cols=63 Identities=5% Similarity=-0.103 Sum_probs=41.6 Q ss_pred CEEEECCCCCCCCCCEEE------------ECCC-CEEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHHCCCC Q ss_conf 557534588885878798------------1789-746713-6888878-9899898859997999999999818858 Q gi|254780834|r 38 DYWACCPFHDEKTPSFHC------------NDSK-GFYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIAGVPL 100 (648) Q Consensus 38 ~~~~~cPfh~ektpsf~v------------~~~~-~~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~gi~~ 100 (648) .|..++.+-++.+|.+.- ...+ -.-||. |-|.+|- |+-++|..+++++.||+..+..+-.... T Consensus 51 ~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~RS~~~v~aYLm~~~~~~~~~A~~~v~~~R~~~~ 128 (211) T 2g6z_A 51 HYKWIPVEDSHTADISSHFQEAIDFIDCVREKGGKVLVHSEAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRRSMVS 128 (211) T ss_dssp EEEECCCCSSTTSCCGGGHHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHCTTCC T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC T ss_conf 699985266856899999999998656777337518998788787309999999998629999999999999899668 No 51 >>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... (A:154-258) Probab=51.53 E-value=13 Score=15.59 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=35.1 Q ss_pred CCEEEEE---ECCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCHH Q ss_conf 6818996---17886622577788888877753697-30675257888888 Q gi|254780834|r 314 SPRIVLC---FDGDDPGLRAAYKAIDLVLCHLIPGN-RVNFVLLSRGEDPD 360 (648) Q Consensus 314 ~~~vvl~---fDgD~AG~kAa~Ra~e~~l~~l~~g~-~v~vv~LP~G~DPD 360 (648) .+.|++. .=||++|+|=.-+|.+.++..++... .+.++.|..+...| T Consensus 53 G~~v~lRF~~~TGDAmGmNMvtkat~~~~~~i~~~~p~~~~~~lsGN~ctD 103 (105) T 2r4f_A 53 GRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTD 103 (105) T ss_dssp TTEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHCTTCEEEESCCSCSCC T ss_pred CCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHH T ss_conf 766999999722777876799999999999999868876056322552565 No 52 >>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A (A:89-295) Probab=51.24 E-value=13 Score=15.55 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=7.1 Q ss_pred HHHHHHHHHCHHH Q ss_conf 9999999847788 Q gi|254780834|r 485 AALLLTLINHPAI 497 (648) Q Consensus 485 ~~LL~llI~~P~l 497 (648) -.+++.++....+ T Consensus 68 Wa~IyY~LR~G~~ 80 (207) T 2qx5_A 68 WALIFYLLRAGLI 80 (207) T ss_dssp HHHHHHHHTTTCH T ss_pred HHHHHHHHHCCCH T ss_conf 8999999943889 No 53 >>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; NS2B-NS3 protease; 2.75A {Murray valley encephalitis virus} (A:1-231) Probab=51.09 E-value=9.9 Score=16.57 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=8.1 Q ss_pred HCCCCHHHHCCCCCCCCCC Q ss_conf 5068853510124422567 Q gi|254780834|r 146 ERGIDSHAIEMFKLGYAPD 164 (648) Q Consensus 146 ~Rg~~~~~~~~f~lG~ap~ 164 (648) .||+-.. .+.+.||.-+ T Consensus 81 ~~~l~g~--~q~GvG~~~~ 97 (231) T 2wv9_A 81 ARGILGR--YQAGVGVMHE 97 (231) T ss_dssp EECSSCE--EEEEEEEEET T ss_pred ECCCCCC--CEEEEEEEEC T ss_conf 3445666--4212799789 No 54 >>1s1i_9 L37A, YL35, 60S ribosomal protein L43; 80S ribosome, 60S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} (9:) Probab=51.06 E-value=9.6 Score=16.67 Aligned_cols=26 Identities=27% Similarity=0.611 Sum_probs=18.3 Q ss_pred EECCCCCCCCCCEEEECCCCEEEECCCCC Q ss_conf 53458888587879817897467136888 Q gi|254780834|r 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 (648) Q Consensus 41 ~~cPfh~ektpsf~v~~~~~~~~cf~c~~ 69 (648) -.|||..-..=- -...|+|+|=.||. T Consensus 36 y~C~fCgk~~vk---R~a~GIW~C~~C~~ 61 (91) T 1s1i_9 36 YDCSFCGKKTVK---RGAAGIWTCSCCKK 61 (91) T ss_dssp CCCTTTCSSCCC---EETTTEECCSSSCC T ss_pred CCCCCCCCCEEE---EEEEEEEECCCCCC T ss_conf 239899997348---99888868799998 No 55 >>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} (A:1-78,A:595-821) Probab=50.61 E-value=13 Score=15.47 Aligned_cols=70 Identities=21% Similarity=0.181 Sum_probs=47.5 Q ss_pred CCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 87089971438899987435542113432136626789885126818996178866225777888888777536973067 Q gi|254780834|r 271 SSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 (648) Q Consensus 271 ~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~v 350 (648) ++..+|.-|+--| |..--+|.++|--..-.+.||. | ..|.+| T Consensus 37 ~~k~~i~~~~PY~---------ng~lH~GH~~~~~~~D~~aR~~------------------r---------m~G~~v-- 78 (305) T 1ile_A 37 GPRYTVYEGPPTA---------NGLPHVGHAQARSYKDLFPRYK------------------T---------MRGYYA-- 78 (305) T ss_dssp SCBCCBCCCCCCT---------TSCCCTTHHHHHHHHHHHHHHH------------------H---------HTTCBC-- T ss_pred CCCEEEECCCCCC---------CCCCHHHHHHHHHHHHHHHHHH------------------H---------CCCCCC-- T ss_conf 9988997289887---------8860342778889999999998------------------7---------389987-- Q ss_pred EECCCCCCHHHHHHCCCHHHHHHHHHHCC Q ss_conf 52578888889972036688998864149 Q gi|254780834|r 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESL 379 (648) Q Consensus 351 v~LP~G~DPDe~ir~~G~eaf~~ll~~A~ 379 (648) .+-.+.||++++.++|+|+++-.+-.+. T Consensus 79 -SkGN~v~p~e~i~~yGaD~lR~~ll~~~ 106 (305) T 1ile_A 79 -SKGNVVDPWDIIRKFGADALRWYIYVSA 106 (305) T ss_dssp -TTTCCCCHHHHHTTTCHHHHHHHHHHHS T ss_pred -CCCCCCCHHHHHHHCCCHHHHHHHHHHC T ss_conf -4788787999987507078889998708 No 56 >>2ggv_B NS3, non-structural protein 3; beta barrel, serine protease, viral protease, flavivirus, hydrolase; 1.80A {West nile virus} PDB: 2ijo_B (B:) Probab=50.55 E-value=10 Score=16.44 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=12.2 Q ss_pred EEEECCCCEEEEECCCC Q ss_conf 89707785888501001 Q gi|254780834|r 209 PIRSSRGQVIAFGGRTL 225 (648) Q Consensus 209 Pi~~~~g~~i~f~gR~l 225 (648) ||.|..|+|||+.|--+ T Consensus 137 PIi~~~G~vVGLYGnGv 153 (185) T 2ggv_B 137 PIVDKNGDVIGLYGNGV 153 (185) T ss_dssp EEECTTSCEEEEEEEEE T ss_pred CEECCCCCEEEEECCEE T ss_conf 74755983999855749 No 57 >>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual specificity phosphatase, DUSP13, testis and skeletal muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A (A:) Probab=50.55 E-value=8.2 Score=17.30 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=18.4 Q ss_pred EEE-CCCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHHCCC Q ss_conf 671-36888878-989989885999799999999981885 Q gi|254780834|r 62 YYC-FSCHVKGD-HLSFLSALLGCSFIESVQRLAAIAGVP 99 (648) Q Consensus 62 ~~c-f~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~gi~ 99 (648) -|| -|-|.+|- +.-++|...++++.||++.+..+-.+. T Consensus 136 VHC~~G~~RS~~i~~ayLm~~~~~~~~~A~~~v~~~R~~~ 175 (205) T 2pq5_A 136 VHCAMGVSRSATLVLAFLMIYENMTLVEAIQTVQAHRNIC 175 (205) T ss_dssp EECSSSSSHHHHHHHHHHHHHSCCCHHHHHHHHTTTSCCC T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC T ss_conf 9835666424999999999974989999999999768979 No 58 >>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} (Z:) Probab=50.31 E-value=9.6 Score=16.67 Aligned_cols=25 Identities=24% Similarity=0.662 Sum_probs=18.4 Q ss_pred EECCCCCCCCCCEEEE-CCCCEEEECCCCC Q ss_conf 5345888858787981-7897467136888 Q gi|254780834|r 41 ACCPFHDEKTPSFHCN-DSKGFYYCFSCHV 69 (648) Q Consensus 41 ~~cPfh~ektpsf~v~-~~~~~~~cf~c~~ 69 (648) --|||..-.+ |- ...|+|+|=.||. T Consensus 61 y~CpfCgk~~----vkR~a~GIW~C~~C~~ 86 (116) T 3cc2_Z 61 HACPNCGEDR----VDRQGTGIWQCSYCDY 86 (116) T ss_dssp EECSSSCCEE----EEEEETTEEEETTTCC T ss_pred CCCCCCCCCE----EEEEEEEEEECCCCCC T ss_conf 4188889970----4778888878588899 No 59 >>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 1mkp_A (A:) Probab=50.03 E-value=11 Score=16.14 Aligned_cols=40 Identities=8% Similarity=0.051 Sum_probs=28.8 Q ss_pred EEEEC-CCCCCCCH-HHHHHHHCCCCHHHHHHHHHHHH-CCCC Q ss_conf 46713-68888789-89989885999799999999981-8858 Q gi|254780834|r 61 FYYCF-SCHVKGDH-LSFLSALLGCSFIESVQRLAAIA-GVPL 100 (648) Q Consensus 61 ~~~cf-~c~~~gd~-~~f~~~~~~~~f~ea~~~la~~~-gi~~ 100 (648) .-||- |-|.+|-+ .-++|...+++|.+|++.+..+- ++.+ T Consensus 89 lVHC~~G~~RS~~~v~ayL~~~~~~~~~~A~~~v~~~R~~~~~ 131 (155) T 2hxp_A 89 LVHSLAGVSRSVTVTVAYLMQKLHLSLNDAYDLVKRKKSNISP 131 (155) T ss_dssp EEECSSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHHHCSCCCC T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC T ss_conf 9986677881799999999998399799999999998898899 No 60 >>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, microfluidic labcard, PSI-2; 1.70A {Burkholderia pseudomallei STRAIN1710B} PDB: 3cez_A (A:) Probab=49.52 E-value=12 Score=15.84 Aligned_cols=14 Identities=7% Similarity=0.017 Sum_probs=7.4 Q ss_pred CCCCHHHHCCCCCC Q ss_conf 06885351012442 Q gi|254780834|r 147 RGIDSHAIEMFKLG 160 (648) Q Consensus 147 Rg~~~~~~~~f~lG 160 (648) |-++.+....+.-| T Consensus 59 ~pftg~y~~~~~~G 72 (164) T 3cxk_A 59 PPFTGEYTDTEDAG 72 (164) T ss_dssp CTTCSTTTTCCCSE T ss_pred CCCCCCCCCCCCCC T ss_conf 99977675788985 No 61 >>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} (A:351-477) Probab=49.38 E-value=14 Score=15.32 Aligned_cols=18 Identities=11% Similarity=-0.036 Sum_probs=6.9 Q ss_pred CHHHHHHCCCHHHHHHHH Q ss_conf 888997203668899886 Q gi|254780834|r 358 DPDSFIRCYGKTAFEKLI 375 (648) Q Consensus 358 DPDe~ir~~G~eaf~~ll 375 (648) |||..+|......+..+. T Consensus 24 d~~~~vr~~a~~~l~~l~ 41 (127) T 1b3u_A 24 DECPEVRLNIISNLDCVN 41 (127) T ss_dssp CSCHHHHHHHHTTCHHHH T ss_pred HHHHHHHHHHHHHHHHCC T ss_conf 001013478887633200 No 62 >>3e90_B NS3 protease; trypsin-like serine protease, protease inhibitor, catalytic histidine, induced FIT, ATP-binding, capsid protein, helicase; HET: NKK; 2.45A {West nile virus} (B:) Probab=49.26 E-value=11 Score=16.32 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=13.4 Q ss_pred EEEECCCCEEEEECCCC Q ss_conf 89707785888501001 Q gi|254780834|r 209 PIRSSRGQVIAFGGRTL 225 (648) Q Consensus 209 Pi~~~~g~~i~f~gR~l 225 (648) ||.|..|+|||+.|--+ T Consensus 142 PIi~~~G~vVGLYGnGv 158 (198) T 3e90_B 142 PIVDKNGDVIGLYGNGV 158 (198) T ss_dssp EEECTTCCEEEECCCEE T ss_pred CEECCCCCEEEEECCEE T ss_conf 64745896999853668 No 63 >>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} (A:) Probab=48.36 E-value=10 Score=16.37 Aligned_cols=82 Identities=10% Similarity=-0.017 Sum_probs=43.4 Q ss_pred CEEEEECCCC-CCHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 3067525788-888899720366889988641499279999999853023314579999999998854179989999999 Q gi|254780834|r 347 RVNFVLLSRG-EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 (648) Q Consensus 347 ~v~vv~LP~G-~DPDe~ir~~G~eaf~~ll~~A~~l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~yl 425 (648) ..++...|.= -|-||.--.||.. -+.---|-+|-....+.+ ..-..+.-...++.+.+..|+|+.+|+... T Consensus 342 ~A~~~s~P~LeI~~dDV~~sHgAt-------vG~id~e~LFYL~SRGi~-~~~A~~Llv~gF~~~vl~~i~~e~lr~~i~ 413 (435) T 1vh4_A 342 LAEVDTKPQLEIYADDVKCSHGAT-------VGRIDDEQIFYLRSRGIN-QQDAQQMIIYAFAAELTEALRDEGLKQQVL 413 (435) T ss_dssp TCEEEEEEEEEECCSSEEEEEEEE-------EECCCHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCCCHHHHHHHH T ss_pred CCEEEECCEEEEECCCEEEEEEEE-------CCCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 841665623899639726994021-------467898999999876999-999999999998999998698599999999 Q ss_pred HHHHHHHHHHH Q ss_conf 99999988765 Q gi|254780834|r 426 QAIRDRLQQLF 436 (648) Q Consensus 426 ~~la~~L~~~~ 436 (648) +.+.++|.... T Consensus 414 ~~i~~~l~~~~ 424 (435) T 1vh4_A 414 ARIGQRLPGGA 424 (435) T ss_dssp HHHHTTSTTC- T ss_pred HHHHHHHHCCC T ss_conf 99998611422 No 64 >>2waq_N DNA-directed RNA polymerase RPO10 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_N 2pmz_N 3hkz_N (N:) Probab=48.01 E-value=14 Score=15.16 Aligned_cols=31 Identities=23% Similarity=0.488 Sum_probs=18.8 Q ss_pred EECCCCC-CCCHH-HHHHHH-CCCCHHHHHHHHH Q ss_conf 7136888-87898-998988-5999799999999 Q gi|254780834|r 63 YCFSCHV-KGDHL-SFLSAL-LGCSFIESVQRLA 93 (648) Q Consensus 63 ~cf~c~~-~gd~~-~f~~~~-~~~~f~ea~~~la 93 (648) .||+||+ =||.+ .|+... +|.+-.+|+-.|. T Consensus 6 RCFTCGkvig~~we~y~~~~~~g~~~~~aLD~Lg 39 (66) T 2waq_N 6 RCFTCGSLIADKWQPFITRVNAGENPGKVLDDLG 39 (66) T ss_dssp SCTTTCCCCGGGHHHHHHHHTTTCCHHHHHHHTT T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCC T ss_conf 6577860479989999999876999899999869 No 65 >>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (Z:) Probab=47.99 E-value=11 Score=16.14 Aligned_cols=25 Identities=24% Similarity=0.662 Sum_probs=18.5 Q ss_pred EECCCCCCCCCCEEEE-CCCCEEEECCCCC Q ss_conf 5345888858787981-7897467136888 Q gi|254780834|r 41 ACCPFHDEKTPSFHCN-DSKGFYYCFSCHV 69 (648) Q Consensus 41 ~~cPfh~ektpsf~v~-~~~~~~~cf~c~~ 69 (648) -.|||..-.+ |- ...|+|+|=+||. T Consensus 28 y~C~fCgk~~----vkR~~~GIW~C~~C~~ 53 (83) T 1vq8_Z 28 HACPNCGEDR----VDRQGTGIWQCSYCDY 53 (83) T ss_dssp EECSSSCCEE----EEEEETTEEEETTTCC T ss_pred CCCCCCCCCC----EEEEEEEEEECCCCCC T ss_conf 5198989971----2888888878899999 No 66 >>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} PDB: 1vhr_A* 1j4x_A* (A:) Probab=46.99 E-value=15 Score=15.04 Aligned_cols=61 Identities=5% Similarity=0.022 Sum_probs=37.0 Q ss_pred EEECCCCCCCCCCE--------------EEECCCC-EEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHHCCCC Q ss_conf 75345888858787--------------9817897-46713-6888878-9899898859997999999999818858 Q gi|254780834|r 40 WACCPFHDEKTPSF--------------HCNDSKG-FYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIAGVPL 100 (648) Q Consensus 40 ~~~cPfh~ektpsf--------------~v~~~~~-~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~gi~~ 100 (648) .-.+|+.+..+|.. .-...+. .-||- |=|.+|- ++-++|...++++.+|+..+..+-.+.+ T Consensus 83 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vlVHC~~G~~RS~~vv~aylm~~~~~~~~~A~~~v~~~r~~~~ 160 (183) T 3f81_A 83 YLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNREIGP 160 (183) T ss_dssp EEECCCCCSTTSCGGGGHHHHHHHHHHHHHSTTCCEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCCCC T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC T ss_conf 997316877148799999999999877530477239998077777409999999998309899999999996798998 No 67 >>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Porphyromonas gingivalis W83} (A:205-263) Probab=46.51 E-value=15 Score=14.98 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=33.4 Q ss_pred CHHHHHHHHHCCC--EEEEEECCCCCCH-HHHHHHHHHHHHHH--HCCCCEEEEECCC Q ss_conf 6267898851268--1899617886622-57778888887775--3697306752578 Q gi|254780834|r 303 TEYQLRLLWKLSP--RIVLCFDGDDPGL-RAAYKAIDLVLCHL--IPGNRVNFVLLSR 355 (648) Q Consensus 303 t~~~~~~l~r~~~--~vvl~fDgD~AG~-kAa~Ra~e~~l~~l--~~g~~v~vv~LP~ 355 (648) |..||-.|-||+. .|+++...|..-- -+.++...-.|.-. ..|..++++.||. T Consensus 1 TDGHID~larFv~p~~vl~~~~~d~~d~~y~~~~~~~~~L~~~tda~Gr~~~i~~lP~ 58 (59) T 1zbr_A 1 TDGHIDTLARFVDTRTIVYVRSEDPSDEHYSDLTAXEQELKELRRPDGQPYRLVPLPX 58 (59) T ss_dssp SSSCGGGSEEEEETTEEEEEECCCTTSTTHHHHHHHHHHHHHCBCTTSCBCEEEEEEC T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC T ss_conf 6665123589807995688624787651567999999999986431487434798247 No 68 >>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A* (A:39-82,A:130-154) Probab=46.36 E-value=7.4 Score=17.73 Aligned_cols=14 Identities=36% Similarity=0.795 Sum_probs=11.1 Q ss_pred ECCCCEEEECCCCC Q ss_conf 17897467136888 Q gi|254780834|r 56 NDSKGFYYCFSCHV 69 (648) Q Consensus 56 ~~~~~~~~cf~c~~ 69 (648) +.++|+|+|-+||. T Consensus 7 ~~e~GvY~C~~Cg~ 20 (69) T 3hcj_A 7 NKLDGVYTCRLCGL 20 (69) T ss_dssp SCSSEEEEETTTCC T ss_pred CCCCCEEEECCCCC T ss_conf 87773785078996 No 69 >>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase, zinc; NMR {Methanothermobacterthermautotrophicus str} (A:28-79,A:141-151) Probab=45.32 E-value=8.6 Score=17.12 Aligned_cols=14 Identities=29% Similarity=0.826 Sum_probs=11.7 Q ss_pred ECCCCEEEECCCCC Q ss_conf 17897467136888 Q gi|254780834|r 56 NDSKGFYYCFSCHV 69 (648) Q Consensus 56 ~~~~~~~~cf~c~~ 69 (648) +.++|+|+|=+||. T Consensus 29 ~~e~G~Y~C~~Cg~ 42 (63) T 2k8d_A 29 LHDDGIYRCICCGT 42 (63) T ss_dssp CCSCSEEEETTTTE T ss_pred CCCCCEEECCCCCC T ss_conf 87788897228998 No 70 >>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} (A:119-491) Probab=44.93 E-value=15 Score=14.79 Aligned_cols=14 Identities=14% Similarity=0.335 Sum_probs=5.0 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999988 Q gi|254780834|r 619 SILHEVHIQIHQIE 632 (648) Q Consensus 619 ~el~elk~~L~~l~ 632 (648) +...++..+++.++ T Consensus 32 ~~~~~~~~~~~~~~ 45 (373) T 1m1j_A 32 RLEVDIDIKIRACK 45 (373) T ss_dssp HHHHHHHHHHHTTT T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 No 71 >>2zkr_z 60S ribosomal protein L37A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1ysh_D (z:1-71) Probab=44.83 E-value=16 Score=14.78 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=18.2 Q ss_pred ECCCCCCCCCCEEEECCCCEEEECCCCC Q ss_conf 3458888587879817897467136888 Q gi|254780834|r 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 (648) Q Consensus 42 ~cPfh~ektpsf~v~~~~~~~~cf~c~~ 69 (648) .|||..-.+- --...|+|+|=.||. T Consensus 38 ~CpfCgk~~v---kR~a~GIW~C~~C~~ 62 (71) T 2zkr_z 38 TCSFCGKTKM---KRRAVGIWHCGSCMK 62 (71) T ss_dssp CCSSSCSSCE---EEEETTEEEETTTCC T ss_pred CCCCCCCCEE---EEEEEEEEECCCCCC T ss_conf 1999999746---888888868889999 No 72 >>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral protein/protease complex; 1.50A {Dengue virus 2} (B:) Probab=44.60 E-value=13 Score=15.47 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=7.6 Q ss_pred EEEECCCCEEEEECCC Q ss_conf 8970778588850100 Q gi|254780834|r 209 PIRSSRGQVIAFGGRT 224 (648) Q Consensus 209 Pi~~~~g~~i~f~gR~ 224 (648) ||.|..|+|||+.|-- T Consensus 138 PIin~~G~vVGlygnG 153 (185) T 2fom_B 138 PIVDKKGKVVGLYGNG 153 (185) T ss_dssp EEECTTSCEEEETTCE T ss_pred CEECCCCCEEEEECCE T ss_conf 6575899799985455 No 73 >>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} (A:272-364) Probab=43.86 E-value=6.4 Score=18.31 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=16.5 Q ss_pred ECCCCCCCCCCEEEECCCCEEEECC Q ss_conf 3458888587879817897467136 Q gi|254780834|r 42 CCPFHDEKTPSFHCNDSKGFYYCFS 66 (648) Q Consensus 42 ~cPfh~ektpsf~v~~~~~~~~cf~ 66 (648) -|||||-.| |-|++=-|--|. T Consensus 3 ~aPfHNGtt----v~peRI~WL~fv 23 (93) T 3ljn_A 3 ACPYHNGTT----VLPDRVVWLDFV 23 (93) T ss_dssp TCTTBSSSS----BCGGGCCCCTTS T ss_pred CCCCCCCCC----CCHHHHCCCCHH T ss_conf 376656775----542320334489 No 74 >>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} (A:221-376) Probab=43.42 E-value=11 Score=16.16 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=33.4 Q ss_pred CCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCC Q ss_conf 35210110817888864331000023567870899714388999874355421134321366267898851268 Q gi|254780834|r 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315 (648) Q Consensus 242 f~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~ 315 (648) +.|+..+.|++.+|..||.. -|+.+|-|.+ -..|+++-|..-|+.|..|-..|-|++- T Consensus 50 ~~~eEa~~~FYmlRNLIRRN---------------D~~l~DdiRf-LLsIPsvkaLAh~ait~~~~NELlRLAl 107 (156) T 2aja_A 50 VTKSECLQGFYXLRNLIRRN---------------DEVLLDDIRF-LLSIPGIKALAPTATIPGDANELLRLAL 107 (156) T ss_dssp SSHHHHHHHHHHHHHHHHHC---------------CGGGHHHHHH-HHTSTTTGGGSSCCSSTTCCCHHHHHHH T ss_pred HHCCCCCCCCCCHHHHHHHC---------------CCCHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCHHHHHH T ss_conf 84654213776316999850---------------5786999999-9864677549999988999988999999 No 75 >>3iar_A Adenosine deaminase; purine metabolism, structural genomics, structural genomics consortium, SGC, acetylation, disease mutation; HET: 3D1; 1.52A {Homo sapiens} PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 1a4m_A* 1a4l_A* ... (A:1-60,A:240-367) Probab=42.89 E-value=11 Score=16.25 Aligned_cols=66 Identities=17% Similarity=0.127 Sum_probs=34.9 Q ss_pred HHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHH Q ss_conf 885999799999999981885877682036777889999999999999999973267775789999850688535 Q gi|254780834|r 79 ALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHA 153 (648) Q Consensus 79 ~~~~~~f~ea~~~la~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~ 153 (648) +.+|-=-+|.+..||.+.||++|..+...-.. .+... .... +...|. -..+...+++.++|+.-+. T Consensus 14 HldGs~~~~t~~~la~~~~~~lp~~~~~~~~~------~~~~~-~~~~-l~~~l~-~~d~~~~~~l~e~~i~ie~ 79 (188) T 3iar_A 14 HLDGSIKPETILYYGRRRGIALPANTAEGLLN------VIGMD-KPLT-LPDFLA-LEDQALYNRLRQENMHFEI 79 (188) T ss_dssp BGGGSCCHHHHHHHHHHHTCCCSCSSHHHHHH------HHCCS-SCCC-HHHHHG-GGCHHHHHHHHHTTCEEEE T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHH------HHCCC-CCCC-HHHHHH-CCCHHHHHHHHHHCCCEEE T ss_conf 88478899999999998399999899999998------84455-7788-999999-6699999999984997898 No 76 >>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} (A:25-107) Probab=41.97 E-value=17 Score=14.43 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=31.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99858999999999999998724127989999999999999999999884132676 Q gi|254780834|r 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 (648) Q Consensus 584 l~~r~~~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~~~Eal~e 639 (648) +......+..+.+.+.++|.++ ..+....+..+..+++.++..++....-++ T Consensus 16 l~~~~~~l~~~rn~~sk~I~~~----~~~~~~~l~~e~~~lk~~i~~le~~~~~~~ 67 (83) T 1ses_A 16 LKKRLQEVQTERNQVAKRVPKA----PPEEKEALIARGKALGEEAKRLEEALREKE 67 (83) T ss_dssp HHHHHHHHHHHHHHHHHHSSSS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999997532----515489999999999999999886799998 No 77 >>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} (A:1-117) Probab=41.40 E-value=15 Score=15.02 Aligned_cols=66 Identities=6% Similarity=-0.021 Sum_probs=26.7 Q ss_pred CCHHHHHHCCCHHHHHHHHHHCC-CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH Q ss_conf 88889972036688998864149-9279999999853023314579999999998854179989999 Q gi|254780834|r 357 EDPDSFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 (648) Q Consensus 357 ~DPDe~ir~~G~eaf~~ll~~A~-~l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~ 422 (648) .|||..+|......+..+...-. ....-.+..+.....-++++-|..+...+..++..++...... T Consensus 20 ~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~ 86 (117) T 1b3u_A 20 RNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVH 86 (117) T ss_dssp TCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGG T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHH T ss_conf 5999999999999999999984917449999999999865747999999999999998728756899 No 78 >>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} (A:) Probab=40.99 E-value=17 Score=14.32 Aligned_cols=30 Identities=27% Similarity=0.569 Sum_probs=20.4 Q ss_pred ECCCCC-CCCCCEEEECC--CCEEEECCCCCCC Q ss_conf 345888-85878798178--9746713688887 Q gi|254780834|r 42 CCPFHD-EKTPSFHCNDS--KGFYYCFSCHVKG 71 (648) Q Consensus 42 ~cPfh~-ektpsf~v~~~--~~~~~cf~c~~~g 71 (648) -|||.+ |++=+..+.-. .+.-+|-.||..- T Consensus 25 ~CPfCnh~~sV~vkidk~~~~g~i~C~vCg~~~ 57 (85) T 1wii_A 25 TCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85) T ss_dssp CCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE T ss_pred CCCCCCCCCEEEEEEEECCCEEEEEEEECCCEE T ss_conf 399788987599999922798999985078837 No 79 >>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens} (A:) Probab=40.73 E-value=18 Score=14.28 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=17.0 Q ss_pred EEEC-CCCCCCCH-HHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 6713-68888789-89989885999799999999981 Q gi|254780834|r 62 YYCF-SCHVKGDH-LSFLSALLGCSFIESVQRLAAIA 96 (648) Q Consensus 62 ~~cf-~c~~~gd~-~~f~~~~~~~~f~ea~~~la~~~ 96 (648) -||- |.|.+|-+ .-++|...++++.+|+..+..+- T Consensus 102 VHC~~G~~RS~~iv~ayLm~~~~~~~~~A~~~v~~~R 138 (188) T 2esb_A 102 LHCAAGVSRSAALCLAYLMKYHAMSLLDAHTWTKSCR 138 (188) T ss_dssp EECSSSSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHC T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHC T ss_conf 9813544438999999999971999999999999979 No 80 >>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica} (A:) Probab=40.61 E-value=18 Score=14.27 Aligned_cols=60 Identities=13% Similarity=0.162 Sum_probs=39.6 Q ss_pred CEEEECCCCCCCCCCEEE------------ECCCCE-EEECC-CCCCCCH-HHHHHHHCCCCHHHHHHHHHHHHC Q ss_conf 557534588885878798------------178974-67136-8888789-899898859997999999999818 Q gi|254780834|r 38 DYWACCPFHDEKTPSFHC------------NDSKGF-YYCFS-CHVKGDH-LSFLSALLGCSFIESVQRLAAIAG 97 (648) Q Consensus 38 ~~~~~cPfh~ektpsf~v------------~~~~~~-~~cf~-c~~~gd~-~~f~~~~~~~~f~ea~~~la~~~g 97 (648) .|.-++|+-+...|.... ...+.. -||.. -|.+|-+ .-++|...++++.||++.+..+-. T Consensus 55 ~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~Rp 129 (161) T 3emu_A 55 DILRLDIVSEEGHQLYDSIPNAIKFIIRSIQRKEGVLIISGTGVNKAPAIVIAFLMYYQRLSFINAFNKVQGLYP 129 (161) T ss_dssp EEEEECCCCSSTTHHHHHHHHHHHHHHHHHHTTCEEEEEESSSSSHHHHHHHHHHHHHTTCCHHHHHHHHHHHCT T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC T ss_conf 899996478872689999999999754441168537998412242149999999998429999999999999899 No 81 >>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens} (A:) Probab=40.28 E-value=18 Score=14.23 Aligned_cols=40 Identities=5% Similarity=0.088 Sum_probs=26.8 Q ss_pred EEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHH-CCCC Q ss_conf 46713-6888878-989989885999799999999981-8858 Q gi|254780834|r 61 FYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIA-GVPL 100 (648) Q Consensus 61 ~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~-gi~~ 100 (648) +-||- |=|.+|- |.-|+|..+++++.+|++++..+- ++.+ T Consensus 91 lVHC~~G~~RS~~~v~ayLm~~~~~~~~~A~~~v~~~R~~~~~ 133 (177) T 2oud_A 91 LIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPIISP 133 (177) T ss_dssp EEECSSSSSHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCC T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC T ss_conf 9984755560699999999998298999999999998996799 No 82 >>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori J99} PDB: 2cmu_A (A:199-265) Probab=40.21 E-value=18 Score=14.22 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=32.1 Q ss_pred CHHHHHHHHHCCC--EEEEEECCCCCCH-HHHHHHHHHHHHHH--HCCCCEEEEECCC Q ss_conf 6267898851268--1899617886622-57778888887775--3697306752578 Q gi|254780834|r 303 TEYQLRLLWKLSP--RIVLCFDGDDPGL-RAAYKAIDLVLCHL--IPGNRVNFVLLSR 355 (648) Q Consensus 303 t~~~~~~l~r~~~--~vvl~fDgD~AG~-kAa~Ra~e~~l~~l--~~g~~v~vv~LP~ 355 (648) |..||-.|-||+. .|+++...|..-- -+..++..-.|.-. ..|..++|+.||. T Consensus 1 TDGHID~lArFv~p~~vl~~~~~d~~dp~~~~~~~~~~~L~~~tda~G~~~~ii~lP~ 58 (67) T 3hvm_A 1 TDSHTDTLARFLDKDTIVYSACEDKNDEHYTALKKMQEELKTFKKLDKTPYKLIPLEI 58 (67) T ss_dssp SSCCGGGTEEEEETTEEEEEECCCTTSTTHHHHHHHHHHHHHCBCTTSCBCEEEEEEC T ss_pred CCCCCCCCEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECC T ss_conf 5677402104447983999971477631489999999999985532115775057628 No 83 >>3e7h_A DNA-directed RNA polymerase subunit beta; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 1.70A {Vibrio cholerae} (A:7-87) Probab=40.17 E-value=4.8 Score=19.48 Aligned_cols=53 Identities=23% Similarity=0.461 Sum_probs=37.4 Q ss_pred CCCCC-EEEEEEEECCCCEEEEECCCCCCCC-------CCEECCCCCCCCCCCCHHCCCHHHHHHHHHH Q ss_conf 00167-1688897077858885010014655-------3001038767653521011081788886433 Q gi|254780834|r 200 DRFRN-RLIFPIRSSRGQVIAFGGRTLSKGE-------SVKYLNSPETILFHKGKNLYNFFGALNYLQK 260 (648) Q Consensus 200 d~Fr~-Ri~fPi~~~~g~~i~f~gR~l~~~~-------~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~ 260 (648) |||+| |+.|+|.| .|.||.=.||.++... +-|++.=| ...|+|-+.|.+-+.. T Consensus 12 e~~~G~~~~~DIvd-tGeviv~~g~kIT~~~~kkl~~aGi~~i~v~-------~e~l~gk~la~divd~ 72 (81) T 3e7h_A 12 ERLRGETATFDIEA-DGKVYVEKGRRVTARHIRQLEKDGVNFIEVP-------VEYIVGKVSAKDYVNE 72 (81) T ss_dssp HHHTTCBCSSCEEE-TTEEEECTTCBCCHHHHHHHHHTTCCEEEEC-------GGGGGTCSCCCTTBCT T ss_pred HHHCCCCCCCCCCC-CCEEEEECCCEECHHHHHHHHHCCCCEEECC-------HHHHCCEEEHHHEECC T ss_conf 99678764523035-9909993797638999999864768559817-------7893354503002768 No 84 >>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} (A:) Probab=39.74 E-value=11 Score=16.15 Aligned_cols=16 Identities=19% Similarity=0.663 Sum_probs=11.8 Q ss_pred CCCEEEECCCCCCCCH Q ss_conf 8974671368888789 Q gi|254780834|r 58 SKGFYYCFSCHVKGDH 73 (648) Q Consensus 58 ~~~~~~cf~c~~~gd~ 73 (648) .+..-+||-||+-|-+ T Consensus 3 ~rk~vkCfNCGK~GH~ 18 (29) T 1nc8_A 3 QRKVIRCWNCGKEGHS 18 (29) T ss_dssp CCCCCBCTTTSCBSSC T ss_pred CCCEEEEECCCCCCHH T ss_conf 6545677527874320 No 85 >>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} (A:1-109,A:335-413) Probab=39.69 E-value=18 Score=14.28 Aligned_cols=11 Identities=55% Similarity=0.806 Sum_probs=6.0 Q ss_pred EECCCCEEEEE Q ss_conf 70778588850 Q gi|254780834|r 211 RSSRGQVIAFG 221 (648) Q Consensus 211 ~~~~g~~i~f~ 221 (648) ....|++-+|| T Consensus 74 ~~~~g~~y~~G 84 (188) T 1a12_A 74 LSKSGQVYSFG 84 (188) T ss_dssp EETTSCEEEEE T ss_pred EECCCEEEEEE T ss_conf 96699899994 No 86 >>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens} (A:) Probab=39.66 E-value=18 Score=14.15 Aligned_cols=37 Identities=3% Similarity=0.038 Sum_probs=28.8 Q ss_pred EEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHHC Q ss_conf 46713-6888878-9899898859997999999999818 Q gi|254780834|r 61 FYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIAG 97 (648) Q Consensus 61 ~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~g 97 (648) +-||- |.|.+|- +..++|...++++.+|++.+..+-. T Consensus 94 lVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp 132 (154) T 2r0b_A 94 LVHGNAGISRSAAFVIAYIMETFGMKYRDAFAYVQERRF 132 (154) T ss_dssp EEECSSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHHHST T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC T ss_conf 998320013489999999998639899999999999899 No 87 >>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} (A:154-313) Probab=39.63 E-value=17 Score=14.35 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=7.9 Q ss_pred CCCCHHHHCCCCCCC Q ss_conf 068853510124422 Q gi|254780834|r 147 RGIDSHAIEMFKLGY 161 (648) Q Consensus 147 Rg~~~~~~~~f~lG~ 161 (648) |-++.+-...+.-|. T Consensus 42 ~pftg~y~~~~~~Gi 56 (160) T 3e0m_A 42 APFTNAYDQTFEEGI 56 (160) T ss_dssp CSSSSTTTTCCCSEE T ss_pred CCCCCCCCCCCCCEE T ss_conf 986788766689869 No 88 >>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A (A:1-113) Probab=39.58 E-value=18 Score=14.14 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=37.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999858999999999999998724127989999999999999999999884132 Q gi|254780834|r 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 (648) Q Consensus 574 ~~e~~~~~l~l~~r~~~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~~~Ea 636 (648) +.....+.-.+......+..+.+.+.++|.+....++. ..++..+..+++.++..++.... T Consensus 33 i~~l~~~~r~~~~~~~~l~~~rn~lsk~i~~~~~~~~e--~~~l~~e~~~lk~~l~~le~~~~ 93 (113) T 2dq0_A 33 ILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEP--VDELLAKSREIVKRIGELENEVE 93 (113) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC--THHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999867997--89999999999999999999999 No 89 >>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens} (A:) Probab=38.71 E-value=19 Score=14.04 Aligned_cols=44 Identities=5% Similarity=0.146 Sum_probs=30.0 Q ss_pred CCCCE-EEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHHCCCC Q ss_conf 78974-6713-6888878-9899898859997999999999818858 Q gi|254780834|r 57 DSKGF-YYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIAGVPL 100 (648) Q Consensus 57 ~~~~~-~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~gi~~ 100 (648) ..+.+ -||- |=+.+|- ++-++|...++++.+|+..+..+-..-. T Consensus 82 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~v~~~Rp~~~ 128 (165) T 1wrm_A 82 RGESCLVHCLAGVSRSVTLVIAYIMTVTDFGWEDALHTVRAGRSCAN 128 (165) T ss_dssp TTCEEEEECSSSSSHHHHHHHHHHHHTSSCCHHHHHHHHHHHCTTCC T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC T ss_conf 34305788334466259999999999808789999999999799789 No 90 >>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis mr-1} (A:146-325) Probab=38.45 E-value=19 Score=14.01 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=34.5 Q ss_pred CHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHH-HHHHCCC--EEEEEE Q ss_conf 1011081788886433100002356787089971438899987435542113432136626789-8851268--189961 Q gi|254780834|r 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR-LLWKLSP--RIVLCF 321 (648) Q Consensus 245 ~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~-~l~r~~~--~vvl~f 321 (648) ++.+||.......+.. +.....+.++||+ |+||-..|. .+.++.+ +|++|= T Consensus 99 grE~F~~~~~~~~l~~-------------------------~~~ls~~D~~aTl-t~~TA~sI~~~~~~~~~~~~v~v~G 152 (180) T 3cqy_A 99 GRELFNQAWLEQQLSA-------------------------FNQLNEEDIQSTL-LDLTCHSIAQDILKLAQEGELFVCG 152 (180) T ss_dssp CSSSSSHHHHHHHTTT-------------------------CTTSCHHHHHHHH-HHHHHHHHHHHHHHHCSSEEEEEES T ss_pred HHHHHHHHHHHHHHHC-------------------------CCCCCCHHHHHHH-HHHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 4555445432443201-------------------------2457820255678-8899999875555413567238966 Q ss_pred C Q ss_conf 7 Q gi|254780834|r 322 D 322 (648) Q Consensus 322 D 322 (648) = T Consensus 153 G 153 (180) T 3cqy_A 153 G 153 (180) T ss_dssp G T ss_pred C T ss_conf 8 No 91 >>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii} (A:) Probab=37.90 E-value=17 Score=14.51 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=17.6 Q ss_pred HHHCCCCCCC---CCCCCCHHHHHHHCCCCCHHHHHH Q ss_conf 3510124422---567741034554205997345232 Q gi|254780834|r 152 HAIEMFKLGY---APDSRYSLREHLRQKGFSEEKIIE 185 (648) Q Consensus 152 ~~~~~f~lG~---ap~~~~~l~~~l~~~~~~~~~~~~ 185 (648) ++-.+|+|+| +-.++..|-..+..+|++.+.+++ T Consensus 23 ~vF~~~gi~~~~c~~~~~~tL~~aa~~~gid~~~ll~ 59 (73) T 2k5e_A 23 GVLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDILR 59 (73) T ss_dssp HHHHHTTGGGGGTTTGGGSBHHHHHHHTTCCHHHHHH T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 9999859999798776668299999993989999999 No 92 >>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} (A:) Probab=37.76 E-value=19 Score=13.92 Aligned_cols=39 Identities=10% Similarity=0.107 Sum_probs=31.5 Q ss_pred HCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 126818996178866225777888888777536973067525 Q gi|254780834|r 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 (648) Q Consensus 312 r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~L 353 (648) +..++|+++.|+.++..+|...+++++.. .|-++.++.. T Consensus 2 ~m~k~Ilv~vD~s~~s~~al~~a~~~a~~---~~~~i~~~hv 40 (138) T 1q77_A 2 NAXKVLLVLTDAYSDCEKAITYAVNFSEK---LGAELDILAV 40 (138) T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTT---TCCEEEEEEE T ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHH---CCCEEEEEEE T ss_conf 86789999983999999999999998876---2956999995 No 93 >>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} (A:1-65) Probab=37.50 E-value=19 Score=13.89 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=18.3 Q ss_pred EEECCCCCCCCCCEEEECCCCEEEECCCCCC Q ss_conf 7534588885878798178974671368888 Q gi|254780834|r 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 (648) Q Consensus 40 ~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~ 70 (648) --.||=..-+. -.+|+.+.-.| ||+|+.. T Consensus 14 H~pCpnCGSSD-a~s~YsDGh~~-CF~C~~~ 42 (65) T 1nui_A 14 HIPCDNCGSSD-GNSLFSDGHTF-CYVCEKW 42 (65) T ss_dssp EECCSSSCCSS-CEEEETTSCEE-ETTTCCE T ss_pred CCCCCCCCCCC-CCEEECCCCEE-ECCCCCC T ss_conf 58999897999-98795399889-7889985 No 94 >>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* (A:1-103) Probab=37.48 E-value=15 Score=14.83 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=9.5 Q ss_pred HHHHCCCCCCHHHHHC Q ss_conf 9874355421134321 Q gi|254780834|r 285 SLCQAGVQNVVSSLGT 300 (648) Q Consensus 285 ~l~~~G~~n~va~~Gt 300 (648) .|++.|++.||||+=| T Consensus 68 ~L~d~Gl~~VvAPl~t 83 (103) T 3i1a_A 68 LLHDSGIKEIIFPIHT 83 (103) T ss_dssp HHHHTTCCSSCCCCCC T ss_pred HHHHCCCCCCCCEEEC T ss_conf 9996499888824762 No 95 >>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5} (A:1-112) Probab=37.35 E-value=19 Score=13.87 Aligned_cols=51 Identities=20% Similarity=0.412 Sum_probs=26.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 85899999999999999872412798999999999999999999988413267 Q gi|254780834|r 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 (648) Q Consensus 586 ~r~~~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~~~Eal~ 638 (648) .....+..+.+.+.+++.+....++. ...+..+..+++.++..++.+...+ T Consensus 44 ~~~~~l~~~~n~~sk~i~~~k~~~~e--~~~l~~e~~~lk~~l~~le~~~~~~ 94 (112) T 2dq3_A 44 KRLEALRSERNKLSKEIGKLKREGKD--TTEIQNRVKELKEEIDRLEEELRKV 94 (112) T ss_dssp HHHHHHHHHHHHHHHHTTGGGSSCSC--TTTSTTHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999998767888--9999999999999999889999999 No 96 >>1z0j_B FYVE-finger-containing RAB5 effector protein rabenosyn-5, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} (B:) Probab=37.34 E-value=19 Score=13.87 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=35.7 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999998724127989999999999999999999884 Q gi|254780834|r 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 (648) Q Consensus 589 ~~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~~ 633 (648) ..|..++..++.-|.++...+.-|....|-.-|++++.++.+++. T Consensus 12 dPL~eQ~~~i~~yI~qAk~~~rfdEV~tL~~NL~EL~~E~~~~q~ 56 (59) T 1z0j_B 12 ELLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQKG 56 (59) T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 999999886899963267407546999999999999999998637 No 97 >>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405} (A:) Probab=37.08 E-value=20 Score=13.84 Aligned_cols=25 Identities=12% Similarity=0.282 Sum_probs=13.1 Q ss_pred CCCCCCCHHHHHHHCCCCCHHHHHH Q ss_conf 2567741034554205997345232 Q gi|254780834|r 161 YAPDSRYSLREHLRQKGFSEEKIIE 185 (648) Q Consensus 161 ~ap~~~~~l~~~l~~~~~~~~~~~~ 185 (648) +.-.++..|...+..+|++.+.+++ T Consensus 33 c~~~~~~tL~~a~~~~gid~~~ll~ 57 (76) T 2k53_A 33 CPSSMGESIEDACAVHGIDADKLVK 57 (76) T ss_dssp SCCCCCSBHHHHHHHHTCCHHHHHH T ss_pred CCCCCCCCHHHHHHHCCCCHHHHHH T ss_conf 8766777599999891999999999 No 98 >>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* (A:) Probab=36.93 E-value=20 Score=13.82 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=54.5 Q ss_pred HHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH Q ss_conf 89998743554211343213662678988512681899617886622577788888877753697306752578888889 Q gi|254780834|r 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 (648) Q Consensus 282 Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe 361 (648) .++......+..++--++..++......+-..++.|++..+.|..+.+++.++++.+- ..|..+--+ +-+..||+. T Consensus 183 ~~~~~~~~~~d~ViiD~~~~~~~~~~~~l~~~ad~viiV~~~~~~~~~~~~~~~~~l~---~~~~~~~gv-vlN~~~~~~ 258 (271) T 3bfv_A 183 NLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIE---ATGAKLLGV-VLNRMPKDK 258 (271) T ss_dssp HHHHHHHHHCSEEEEECCCTTTCSHHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHH---TTTCEEEEE-EEEEECC-- T ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHH---HCCCCCEEE-EECCCCCCC T ss_conf 9998544128889971788654799999999699899995887779999999999999---779982899-975807886 Q ss_pred HH Q ss_conf 97 Q gi|254780834|r 362 FI 363 (648) Q Consensus 362 ~i 363 (648) -. T Consensus 259 ~~ 260 (271) T 3bfv_A 259 SA 260 (271) T ss_dssp -- T ss_pred CC T ss_conf 76 No 99 >>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} PDB: 3hch_A* 1l1d_A (A:) Probab=36.84 E-value=16 Score=14.67 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=5.8 Q ss_pred CCCCHHHHCCCCCC Q ss_conf 06885351012442 Q gi|254780834|r 147 RGIDSHAIEMFKLG 160 (648) Q Consensus 147 Rg~~~~~~~~f~lG 160 (648) |-++.+-...+.-| T Consensus 29 ~pftg~y~~~~~~G 42 (146) T 3hcg_A 29 YAFSHEYDHLFKPG 42 (146) T ss_dssp CTTCSGGGGCCCSE T ss_pred CCCCCCCCCCCCCC T ss_conf 99873343446668 No 100 >>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} (A:39-159) Probab=36.69 E-value=20 Score=13.79 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=42.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 889999999999999858999999999999998724127------989999999999999999999884132676 Q gi|254780834|r 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG------EAEKTAILISILHEVHIQIHQIESQEAMIE 639 (648) Q Consensus 571 ~~d~~e~~~~~l~l~~r~~~L~r~l~ele~~l~e~~~~~------d~e~~~~l~~el~elk~~L~~l~~~Eal~e 639 (648) .+.+.+...+...+......+..+...+.++|......+ +.+....+..+..+++.++..++....-++ T Consensus 31 vd~i~~ld~~~r~~~~~~~~l~~~~n~isk~i~~~~~~~~~~~~~~~~e~~~L~~~~~~lk~~i~~le~~~~~~~ 105 (121) T 1wle_A 31 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLE 105 (121) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999998567751000268999999999999999999999999999 No 101 >>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} (9:) Probab=36.68 E-value=15 Score=14.83 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=17.7 Q ss_pred EECCCCCCCCCCEEEECCCCEEEECCCCC Q ss_conf 53458888587879817897467136888 Q gi|254780834|r 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 (648) Q Consensus 41 ~~cPfh~ektpsf~v~~~~~~~~cf~c~~ 69 (648) -.|||..-..= --..-|+|+|=+|+. T Consensus 27 y~C~fCgk~~v---kR~a~GIW~C~~C~~ 52 (72) T 3jyw_9 27 YDCSFCGKKTV---KRGAAGIWTCSCCKK 52 (72) T ss_dssp BCCSSCCSSCB---SBCSSSCBCCSSSCC T ss_pred CCCCCCCCCEE---EEEEEEEEECCCCCC T ss_conf 40999999735---898888878899998 No 102 >>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} (A:196-350) Probab=36.38 E-value=20 Score=13.75 Aligned_cols=75 Identities=8% Similarity=-0.020 Sum_probs=34.9 Q ss_pred CCHHHHHHCCCHHHHHHHHHHCCC--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 888899720366889988641499--279999999853023314579999999998854179989999999999999 Q gi|254780834|r 357 EDPDSFIRCYGKTAFEKLIVESLP--LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431 (648) Q Consensus 357 ~DPDe~ir~~G~eaf~~ll~~A~~--l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~yl~~la~~ 431 (648) .|||..+|......+..+.....+ +.+.++..+.+...-.+++-|..+..-+..++...++.......+..+.+. T Consensus 18 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 94 (155) T 1b3u_A 18 SDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL 94 (155) T ss_dssp TCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 35572267888866776513798799998878999998751578899999985331000200010133326899998 No 103 >>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} (W:1-61) Probab=36.32 E-value=19 Score=14.03 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=17.8 Q ss_pred EECCCCCCCCCCEEEECCCCEEEECCCCC Q ss_conf 53458888587879817897467136888 Q gi|254780834|r 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 (648) Q Consensus 41 ~~cPfh~ektpsf~v~~~~~~~~cf~c~~ 69 (648) -.|||..-.+- --...|+|+|=.||. T Consensus 28 y~C~fCgk~~v---kR~a~GIW~C~~C~~ 53 (61) T 1ffk_W 28 YKCPVCGFPKL---KRASTSIWVCGHCGY 53 (61) T ss_pred CCCCCCCCCEE---EEEEEEEEECCCCCC T ss_conf 45999998504---777887897478998 No 104 >>3fmc_A Putative succinylglutamate desuccinylase / aspartoacylase; YP_926482.1, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Shewanella amazonensis SB2B} (A:289-364) Probab=35.89 E-value=17 Score=14.44 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=7.2 Q ss_pred CCEEEECCCCEEEEC Q ss_conf 787981789746713 Q gi|254780834|r 51 PSFHCNDSKGFYYCF 65 (648) Q Consensus 51 psf~v~~~~~~~~cf 65 (648) ||-+|+...+.|+|| T Consensus 60 aSASV~qGTeLYKv~ 74 (76) T 3fmc_A 60 ASASVHQGTELYKVX 74 (76) T ss_dssp SSSEECTTCEEEEEE T ss_pred CCCCCCCCCEEEEEE T ss_conf 887337999999986 No 105 >>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} (A:) Probab=35.19 E-value=21 Score=13.61 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=29.4 Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 681899617886622577788888877753697306752 Q gi|254780834|r 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 (648) Q Consensus 314 ~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~ 352 (648) .++|+++.|+...+++|..-|++++... |-.+.++. T Consensus 2 ~~~ILv~vd~s~~s~~al~~a~~~a~~~---~~~i~~l~ 37 (141) T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRH---DAKLSIIH 37 (141) T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHH---TCEEEEEE T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHC---CCCEEEEE T ss_conf 9829999889989999999999999875---99489999 No 106 >>2f46_A Hypothetical protein; 7380613, DUF442, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.41A {Neisseria meningitidis Z2491} (A:) Probab=35.17 E-value=21 Score=13.60 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=9.2 Q ss_pred CCHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 789899898859997999999999 Q gi|254780834|r 71 GDHLSFLSALLGCSFIESVQRLAA 94 (648) Q Consensus 71 gd~~~f~~~~~~~~f~ea~~~la~ 94 (648) +-++-.+|.+.|+++.+|++.+.. T Consensus 116 s~lv~~yl~~~g~s~~~A~~~v~~ 139 (156) T 2f46_A 116 SLLWGFRRAAEGXPVDEIIRRAQA 139 (156) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 999999999839999999999998 No 107 >>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} (A:) Probab=34.86 E-value=21 Score=13.56 Aligned_cols=77 Identities=13% Similarity=0.132 Sum_probs=51.4 Q ss_pred HHHH-HHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHH---------HHHHHHHHHHHHHCCC--CEE Q ss_conf 8999-874355421134321366267898851268189961788662257---------7788888877753697--306 Q gi|254780834|r 282 DVLS-LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRA---------AYKAIDLVLCHLIPGN--RVN 349 (648) Q Consensus 282 Dvi~-l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kA---------a~Ra~e~~l~~l~~g~--~v~ 349 (648) +++. +++.|+...+.|.||-++ +....+....+.|.+.+||....... .+++++. +.+.|. .++ T Consensus 23 ~i~~~~~~~g~~~~l~Tng~~~~-~~~~~~~~~~~~i~isld~~~~~~~~~~~~~~~~~~~~~i~~---l~~~~~~~~i~ 98 (182) T 3can_A 23 DILKRCGQQGIHRAVDTTLLARK-ETVDEVXRNCELLLIDLKSXDSTVHQTFCDVPNELILKNIRR---VAEADFPYYIR 98 (182) T ss_dssp HHHHHHHHTTCCEEEECTTCCCH-HHHHHHHHTCSEEEEECCCSCHHHHHHHHSSCSHHHHHHHHH---HHHTTCCEEEE T ss_pred HHHHHHHHCCCCEEEEECCCHHH-HHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCEEE T ss_conf 99999987799299972521107-777766520000024322003888887873025788866666---76630231244 Q ss_pred EEECCCCCC-HHHH Q ss_conf 752578888-8899 Q gi|254780834|r 350 FVLLSRGED-PDSF 362 (648) Q Consensus 350 vv~LP~G~D-PDe~ 362 (648) ++..|.-.| ++++ T Consensus 99 ~~~~~~~~d~~~ei 112 (182) T 3can_A 99 IPLIEGVNADEKNI 112 (182) T ss_dssp EEECBTTTCSHHHH T ss_pred EECCCCCCCCHHHH T ss_conf 30227975999999 No 108 >>3f62_A Interleukin 18 binding protein; immunoglobulin, IL-18, beta trefoil, cytokine, secreted; 2.00A {Ectromelia virus} (A:) Probab=34.69 E-value=16 Score=14.75 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=13.1 Q ss_pred CCCCCEEEECCCCEEEECCCCCC Q ss_conf 85878798178974671368888 Q gi|254780834|r 48 EKTPSFHCNDSKGFYYCFSCHVK 70 (648) Q Consensus 48 ektpsf~v~~~~~~~~cf~c~~~ 70 (648) -|-|.+.+...-|-|||-||-+. T Consensus 6 ~kcpnl~ivtssgef~c~gcv~~ 28 (109) T 3f62_A 6 TKCPNLDIVTSSGEFHCSGCVEH 28 (109) T ss_dssp CCSCCCEEEEETTEEEEEEEECS T ss_pred CCCCCCCEEECCCCEEECHHHHH T ss_conf 33898326813682886315542 No 109 >>2iye_A Copper-transporting ATPase; hydrolase, P-type ATPase, CPX-ATPase, COPB, heavy metal translocation; 2.6A {Sulfolobus solfataricus} (A:1-39,A:139-263) Probab=34.38 E-value=21 Score=13.50 Aligned_cols=121 Identities=21% Similarity=0.175 Sum_probs=60.6 Q ss_pred CCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHH--HHHCCCCCCHHHHHCCCCHHH-HHHHH--- Q ss_conf 676535210110817888864331000023567870899714388999--874355421134321366267-89885--- Q gi|254780834|r 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS--LCQAGVQNVVSSLGTALTEYQ-LRLLW--- 311 (648) Q Consensus 238 eT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~--l~~~G~~n~va~~Gtalt~~~-~~~l~--- 311 (648) +|.+|+|.-+|=+.-.+.+..++.+ -..+|+......+.. +.+.||.++.|-+ +++| .+.+. T Consensus 29 ~~~~~~~~~~~P~a~e~I~~L~~~G--------i~v~IiTGD~~~~a~~ia~~lgI~~v~a~v----~p~~K~~iv~~L~ 96 (164) T 2iye_A 29 DTIIFDKTGTLPNLKDYLEKLKNEG--------LKIIILSGDKEDKVKELSKELNIQEYYSNL----SPEDKVRIIEKLK 96 (164) T ss_dssp CEEEEESTTTTSCCHHHHHHHHGGG--------CEEEEECSSCHHHHHHHHHHHTCSEEECSC----CHHHHHHHHHHHH T ss_pred CEEEECCCCCCCHHHHHHHHHHHCC--------CCEEEECCCCCCCCHHHHHHHCHHHHHHCC----CHHHHHHHHHHHH T ss_conf 9999918852312999999999759--------927982387421101479985302534023----5788988884552 Q ss_pred HCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CCCCHHH-HHHCCCHHHHHHHHHHCCCH Q ss_conf 1268189961788662257778888887775369730675257-8888889-97203668899886414992 Q gi|254780834|r 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS-RGEDPDS-FIRCYGKTAFEKLIVESLPL 381 (648) Q Consensus 312 r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP-~G~DPDe-~ir~~G~eaf~~ll~~A~~l 381 (648) +....|.++=||- .--++++.++.. +-+-.-+ .-+.-.| .+.......+..++..++-. T Consensus 97 ~~g~~Va~VGDg~--ND~~aL~~AdVG---------Ia~~~~~~~a~~aADvvl~~~~l~~i~~~i~~sR~~ 157 (164) T 2iye_A 97 QNGNKVLMIGDGV--NDAAALALADVS---------VAMGNGVDISKNVADIILVSNDIGTLLGLIKNRKRL 157 (164) T ss_dssp HTTCCEEEEECST--TTHHHHHHSSEE---------EEESTTTCSSCCCSSEEETTCCHHHHHHHHTCC--- T ss_pred CCCCEEEEEECCC--CHHHHHHHCCEE---------EECCCCCHHHHHHCCEEEECCCHHHHHHHHHHHHHH T ss_conf 2560589994231--046688648799---------983673088998579999579989999999999999 No 110 >>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} (A:) Probab=34.06 E-value=22 Score=13.46 Aligned_cols=25 Identities=20% Similarity=0.038 Sum_probs=17.7 Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHH Q ss_conf 6818996178866225777888888 Q gi|254780834|r 314 SPRIVLCFDGDDPGLRAAYKAIDLV 338 (648) Q Consensus 314 ~~~vvl~fDgD~AG~kAa~Ra~e~~ 338 (648) ...+|+.-..+..|+-|++=++..+ T Consensus 132 ~~~~vvVHC~~G~gRsgtf~~~~~l 156 (212) T 1fpz_A 132 NYRKTLIHSYGGLGRSCLVAACLLL 156 (212) T ss_dssp TTCCEEEECSSSSSHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH T ss_conf 6990898899999668999999999 No 111 >>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* (A:206-382) Probab=33.40 E-value=22 Score=13.38 Aligned_cols=12 Identities=0% Similarity=-0.045 Sum_probs=4.6 Q ss_pred CCCHHHHHHHHH Q ss_conf 799889999999 Q gi|254780834|r 510 YDNNELQKLWSF 521 (648) Q Consensus 510 f~~~~~~~L~~~ 521 (648) +.++.++.+... T Consensus 36 ~~~~~~~~l~~~ 47 (177) T 3kb9_A 36 RKHPAYRRAALL 47 (177) T ss_dssp HTSHHHHHHHHH T ss_pred HHCCHHHHHHHH T ss_conf 608258999999 No 112 >>2etv_A Iron(III) ABC transporter, periplasmic iron- binding protein, putative; TM0189, structural genomics; HET: MLY; 1.70A {Thermotoga maritima MSB8} (A:176-346) Probab=33.40 E-value=20 Score=13.73 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=27.5 Q ss_pred HHHHCCCCCCHHHHHCC---CCHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 98743554211343213---6626789885126818996178866 Q gi|254780834|r 285 SLCQAGVQNVVSSLGTA---LTEYQLRLLWKLSPRIVLCFDGDDP 326 (648) Q Consensus 285 ~l~~~G~~n~va~~Gta---lt~~~~~~l~r~~~~vvl~fDgD~A 326 (648) .+..+|..|+.+..|+. ++.|++ -...+.|||..+++.. T Consensus 27 ~i~~aGg~Nv~~~~~~~~~~is~E~i---l~~~PDvIi~~~~~~~ 68 (171) T 2etv_A 27 PFVVLHARNVVDELGEGHXFIDPEXL---LVWNPEYIFIDENGLS 68 (171) T ss_dssp HHHHTTCEETTGGGCSEEEECCTHHH---HHHCCSEEEEEGGGHH T ss_pred HHHHHCCCCHHHHCCCCCCCCCHHHH---HHHCCCEEEEECCCCC T ss_conf 99981880202214678741589899---7609899999579854 No 113 >>1juh_A Quercetin 2,3-dioxygenase; copper, cupin, glycoprotein, beta sandwich, oxidoreductase; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} (A:1-23,A:222-350) Probab=33.36 E-value=15 Score=14.94 Aligned_cols=10 Identities=50% Similarity=0.521 Sum_probs=7.4 Q ss_pred CCCCEECCCC Q ss_conf 5530010387 Q gi|254780834|r 228 GESVKYLNSP 237 (648) Q Consensus 228 ~~~~KYlNSp 237 (648) -.+||||||. T Consensus 22 ~~GPKYLNs~ 31 (152) T 1juh_A 22 YSGPKYLNSQ 31 (152) T ss_dssp TCSCEEEECT T ss_pred CCCCHHHCCC T ss_conf 8851100256 No 114 >>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} (A:260-564) Probab=33.05 E-value=22 Score=13.34 Aligned_cols=123 Identities=14% Similarity=0.182 Sum_probs=67.4 Q ss_pred HHHCCCCHHHHCCCCCCCCCCCC-CHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEEC Q ss_conf 98506885351012442256774-10345542059973452320121003465410000167168889707785888501 Q gi|254780834|r 144 LDERGIDSHAIEMFKLGYAPDSR-YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222 (648) Q Consensus 144 l~~Rg~~~~~~~~f~lG~ap~~~-~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~g 222 (648) +.++.|++..|--|+-|-|--+- +.|..++...|.+.++..+- | =+.|.+|=+. .+ T Consensus 18 i~g~~L~d~~iv~~GAGsAgigia~ll~~~~~~~gls~e~a~~~-------------------i--~lvD~~Gli~--~~ 74 (305) T 1pj3_A 18 VISKPISEHKILFLGAGEAALGIANLIVXSXVENGLSEQEAQKK-------------------I--WXFDKYGLLV--KG 74 (305) T ss_dssp HHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHT-------------------E--EEEETTEECB--TT T ss_pred HHCCCHHHCEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHCCCC-------------------E--EEECCCCEEE--CC T ss_conf 85897234468996354589999999999530137853323243-------------------8--9974606070--68 Q ss_pred CC-CCCCCCCEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCC Q ss_conf 00-14655300103876765352101108178888643310000235678708997143889998743554211343213 Q gi|254780834|r 223 RT-LSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 (648) Q Consensus 223 R~-l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gta 301 (648) |- +.+..++.|- +.. ...-.-.-.|||...+.-+--.++..|.+ T Consensus 75 r~~~~~~~k~~~~---------~~~--------------------------~~~~~~~L~evv~~vkptvLiG~S~~~g~ 119 (305) T 1pj3_A 75 RKAKIDSYQEPFT---------HSA--------------------------PESIPDTFEDAVNILKPSTIIGVAGAGRL 119 (305) T ss_dssp CSSCCCTTTGGGC---------BCC--------------------------CSSCCSSHHHHHHHHCCSEEEECCCSSCC T ss_pred CCCCCHHHHHHHH---------HHC--------------------------CCCCCCCHHHHHHHCCCCEEEEECCCCCC T ss_conf 7542688899998---------602--------------------------23433203456650477469974576666 Q ss_pred CCHHHHHHHHHCCCE-EEEEECCC Q ss_conf 662678988512681-89961788 Q gi|254780834|r 302 LTEYQLRLLWKLSPR-IVLCFDGD 324 (648) Q Consensus 302 lt~~~~~~l~r~~~~-vvl~fDgD 324 (648) ||++.++.+..++++ |||.+=+= T Consensus 120 Fte~vi~~Ma~~~~rPIIFaLSNP 143 (305) T 1pj3_A 120 FTPDVIRAXASINERPVIFALSNP 143 (305) T ss_dssp SCHHHHHHHHHHCSSCEEEECCSS T ss_pred CCHHHHHHHHHCCCCCEEEECCCC T ss_conf 898999999854899779980798 No 115 >>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcription factors); 2.00A {Drosophila melanogaster} (B:) Probab=32.91 E-value=22 Score=13.32 Aligned_cols=49 Identities=29% Similarity=0.407 Sum_probs=31.7 Q ss_pred HHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 799999999981885-87768203677788999999999999999997326 Q gi|254780834|r 85 FIESVQRLAAIAGVP-LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKN 134 (648) Q Consensus 85 f~ea~~~la~~~gi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (648) -+|.|+..|+-.||. ++. +....-...-.-++-++.+.|.+|.++--++ T Consensus 8 ~~esik~iAeS~Gi~~l~d-e~a~~LA~DVeyRi~eiiQeA~KFMrhskR~ 57 (70) T 1taf_B 8 SAESMKVIAESIGVGSLSD-DAAKELAEDVSIKLKRIVQDAAKFMNHAKRQ 57 (70) T ss_dssp CHHHHHHHHHHTTCCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS T ss_pred CHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 7889999999859888899-9999989999999999999999999974667 No 116 >>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens} (A:) Probab=32.80 E-value=22 Score=13.30 Aligned_cols=44 Identities=2% Similarity=-0.091 Sum_probs=29.1 Q ss_pred CCCCE-EEECC-CCCCCC-HHHHHHHHCCCCHHHHHHHHHHHH-CCCC Q ss_conf 78974-67136-888878-989989885999799999999981-8858 Q gi|254780834|r 57 DSKGF-YYCFS-CHVKGD-HLSFLSALLGCSFIESVQRLAAIA-GVPL 100 (648) Q Consensus 57 ~~~~~-~~cf~-c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~-gi~~ 100 (648) ..+.+ -||-. =|.+|- +.-++|...|+++.+|++.+-.+- ++.+ T Consensus 80 ~~~~VlVHC~~G~~Rs~~vv~ayLm~~~~~~~~~A~~~v~~~R~~~~~ 127 (145) T 2nt2_A 80 HGSKCLVHSKMGVSRSASTVIAYAMKEYGWNLDRAYDYVKERRTVTKP 127 (145) T ss_dssp TTCEEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHCTTCCC T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC T ss_conf 473289980102360799999999998199999999999997996789 No 117 >>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B (B:1-45) Probab=32.78 E-value=17 Score=14.39 Aligned_cols=15 Identities=33% Similarity=0.820 Sum_probs=10.7 Q ss_pred EEECCCCEEE--ECCCC Q ss_conf 9817897467--13688 Q gi|254780834|r 54 HCNDSKGFYY--CFSCH 68 (648) Q Consensus 54 ~v~~~~~~~~--cf~c~ 68 (648) .||...+.|| ||.|- T Consensus 27 iVNSnGel~HeqCFVCa 43 (45) T 3f6q_B 27 IVNSNGELYHEQCFVCA 43 (45) T ss_dssp EEEETTEEEETTTSSCT T ss_pred EEEECCCEECCCCCCCC T ss_conf 99979846763248864 No 118 >>3cxj_A Uncharacterized protein; PSI-II, structural genomics, protein structure initiative; 2.80A {Methanothermobacter thermautotrophicusstr} (A:) Probab=32.53 E-value=23 Score=13.27 Aligned_cols=55 Identities=13% Similarity=0.032 Sum_probs=35.2 Q ss_pred HHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH Q ss_conf 134321366267898851268189961788662257778888887775369730675257888888997 Q gi|254780834|r 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 (648) Q Consensus 295 va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~i 363 (648) +-+||++++++|.+.|..+..+ =++.-+. ++...++ -+.+.|.++|++++|..+. T Consensus 54 ii~~gi~is~~H~~~L~~l~~e----------eR~efl~--~i~~~Ll--~m~vdf~~~pp~~~p~~i~ 108 (165) T 3cxj_A 54 LIACATSVSPEHQAGIRALSXE----------KRTEFIW--KVRFTLN--RFGVDFQLDHPENVLNSYL 108 (165) T ss_dssp EEEEEEECCTTHHHHHHHSCHH----------HHHHHHH--HHHHHHT--TTTCEEEEECTTSCCCEEE T ss_pred EEEEEEEECHHHHHHHHHCCHH----------HHHHHHH--HHHHHHH--HCCCCEEEECCCCCCCEEE T ss_conf 9999988889999999858988----------8999999--9999999--6089789848834686589 No 119 >>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} (A:) Probab=32.31 E-value=23 Score=13.24 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=18.7 Q ss_pred EECCCCC-CCCHHHHHHH-H-CCCCHHHHHHHHH Q ss_conf 7136888-8789899898-8-5999799999999 Q gi|254780834|r 63 YCFSCHV-KGDHLSFLSA-L-LGCSFIESVQRLA 93 (648) Q Consensus 63 ~cf~c~~-~gd~~~f~~~-~-~~~~f~ea~~~la 93 (648) .||+||+ =||.+.=+.+ . ++.+-.+|+-.|. T Consensus 5 RCFTCGkvig~~we~y~~~~~~g~~~~~aLD~Lg 38 (55) T 1ef4_A 5 RCLSCGKPVSAYFNEYQRRVADGEDPKDVLDDLG 38 (55) T ss_dssp SCSCTTSCCHHHHHHHHHHHHHTCCHHHHHHHHT T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCC T ss_conf 6089976889999999999986999789998849 No 120 >>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* (A:219-379) Probab=32.15 E-value=23 Score=13.22 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=31.7 Q ss_pred CCCCCEEEEEEEE--------------CCCCEEEEECCCCCCC----CCCEECCCCCCCCCCC Q ss_conf 0016716888970--------------7785888501001465----5300103876765352 Q gi|254780834|r 200 DRFRNRLIFPIRS--------------SRGQVIAFGGRTLSKG----ESVKYLNSPETILFHK 244 (648) Q Consensus 200 d~Fr~Ri~fPi~~--------------~~g~~i~f~gR~l~~~----~~~KYlNSpeT~if~K 244 (648) ..-.|||++.-+. ..||-|.|.||.+... ..-+|++-|++.+--| T Consensus 18 ~~a~gRIivs~faSni~RIq~i~~~A~~~~Rkv~~~Grsl~~~~~~a~~lg~l~~p~~~i~~~ 80 (161) T 3bk2_A 18 GRAPGRVFVTTFASHIHRIQSVIWAAEKYGRKVAXEGRSXLKFSRIALELGYLKVKDRLYTLE 80 (161) T ss_dssp HHCSSCEEEECCTTCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHHHHHTTSCCCSSCCBCTG T ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCCCCCCCCEECHH T ss_conf 970697798522323889999999999849903532312334345676527645764321415 No 121 >>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens} (A:) Probab=32.14 E-value=23 Score=13.22 Aligned_cols=59 Identities=8% Similarity=0.143 Sum_probs=38.2 Q ss_pred EEEECCCCCCCCCCEEE-------------ECCCC-EEEECC-CCCCCCH-HHHHHHHCCCCHHHHHHHHHHHHC Q ss_conf 57534588885878798-------------17897-467136-8888789-899898859997999999999818 Q gi|254780834|r 39 YWACCPFHDEKTPSFHC-------------NDSKG-FYYCFS-CHVKGDH-LSFLSALLGCSFIESVQRLAAIAG 97 (648) Q Consensus 39 ~~~~cPfh~ektpsf~v-------------~~~~~-~~~cf~-c~~~gd~-~~f~~~~~~~~f~ea~~~la~~~g 97 (648) ..-.||..+..++.... ...+. ..||-+ =|.+|-+ +-++|...++++.+|++.+..+-. T Consensus 52 ~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RSgtv~~ayLm~~~~~~~~~A~~~v~~~Rp 126 (160) T 1yz4_A 52 TYLRIPVADTPEVPIKKHFKECINFIHCCRLNGGNCLVHSFAGISRSTTIVTAYVMTVTGLGWRDVLEAIKATRP 126 (160) T ss_dssp EEEEECCCSCTTSCGGGGHHHHHHHHHHHHHTTCCEEEEETTSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHTCT T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC T ss_conf 035413345866799999999999888753010478762331246249999999999849689999999999799 No 122 >>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human papillomavirus type 16} (A:) Probab=32.13 E-value=23 Score=13.22 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=6.7 Q ss_pred CCCCCCCEEEEEEE Q ss_conf 00001671688897 Q gi|254780834|r 198 SYDRFRNRLIFPIR 211 (648) Q Consensus 198 ~~d~Fr~Ri~fPi~ 211 (648) .||.=+.|+++-++ T Consensus 90 ~ynPe~eRLVW~l~ 103 (505) T 1dzl_A 90 FYNPDTQRLVWACV 103 (505) T ss_dssp TSCTTTEEEEEEEE T ss_pred CCCCCCCEEEEEEE T ss_conf 76987656777888 No 123 >>2vqp_A Matrix protein; viral protein, peripheral membrane protein, RSV, virion, envelope protein; HET: GOL; 1.60A {Human respiratory syncytial virus A2} (A:125-257) Probab=31.85 E-value=15 Score=14.93 Aligned_cols=18 Identities=22% Similarity=0.360 Sum_probs=7.8 Q ss_pred CCEEEECCCCC-CCCCCEE Q ss_conf 75575345888-8587879 Q gi|254780834|r 37 GDYWACCPFHD-EKTPSFH 54 (648) Q Consensus 37 ~~~~~~cPfh~-ektpsf~ 54 (648) ++.++||-||| |+.-+++ T Consensus 18 HdlIAlCdF~n~~~~~~v~ 36 (133) T 2vqp_A 18 HDIIALCEFENIVTSKKVI 36 (133) T ss_dssp EEEEEEEEEEETTTCCEEE T ss_pred HHHEECCCCCHHHCCCEEE T ss_conf 2220101540222186241 No 124 >>2pt0_A MYO-inositol hexaphosphate phosphohydrolase; PTP, protein tyrosine phosphatase, phytase, P-loop, cysteine-sulfonic acid, oxidized thiol.; 1.70A {Selenomonas ruminantium} (A:58-129,A:199-340) Probab=31.46 E-value=23 Score=13.13 Aligned_cols=89 Identities=7% Similarity=-0.114 Sum_probs=57.2 Q ss_pred HHHHHHHHHC--CHHHH--HHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEE-----------CCCC-EEEEC-CCC Q ss_conf 8999998748--88887--541222101588777775575345888858787981-----------7897-46713-688 Q gi|254780834|r 6 DFIKDLLIHI--PISNL--IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN-----------DSKG-FYYCF-SCH 68 (648) Q Consensus 6 ~~i~~i~~~~--~i~~v--v~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~-----------~~~~-~~~cf-~c~ 68 (648) ..+..|++++ +|+.| =-+-=-.++.|- -.-.|||-+...|+...- .++. ..||. |+| T Consensus 52 ~~~~~~~~~~~~~~~~~dlr~e~~~~e~~gi------~y~~ip~~D~~~P~~e~l~~~v~~I~~~~~~~~VlVHC~aG~G 125 (214) T 2pt0_A 52 NVAAKLREKTAGPIYDVDLRQEQEVAEAAGM------RYFRIAATDHVWPTPENIDRFLAFYRTLPQDAWLHFHXEAGVG 125 (214) T ss_dssp HHHHHHHTTCSSCEEEEEEECHHHHHHHTTC------EEEEEEECTTSCCCHHHHHHHHHHHHTCCTTCEEEEECSSSSH T ss_pred HHHHHHHHCCCCCEEEEECCCHHHHHHHCCC------EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC T ss_conf 9999985347998799988889999985697------4999335888898989999999999738999708998189996 Q ss_pred CCCCHHH-HHHHHCCCCHHHHHHHHHHHHCCCC Q ss_conf 8878989-9898859997999999999818858 Q gi|254780834|r 69 VKGDHLS-FLSALLGCSFIESVQRLAAIAGVPL 100 (648) Q Consensus 69 ~~gd~~~-f~~~~~~~~f~ea~~~la~~~gi~~ 100 (648) ..|-++. ++|...+.+..||+..+...-..-+ T Consensus 126 RTgtiia~yLm~~~~~~~~eai~~lr~~R~~~v 158 (214) T 2pt0_A 126 RTTAFMVMTDMLKNPSVSLKDILYRQHEIGGFY 158 (214) T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHTTSCC T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC T ss_conf 899999999998676999999999998751765 No 125 >>3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A {Bacillus stearothermophilus} (A:1-131,A:251-305) Probab=31.29 E-value=24 Score=13.11 Aligned_cols=35 Identities=37% Similarity=0.474 Sum_probs=22.7 Q ss_pred CEE-EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 818-9961788662257778888887775369730675 Q gi|254780834|r 315 PRI-VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 (648) Q Consensus 315 ~~v-vl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv 351 (648) ++| |+.--||.+|.||+.|++=. .....|.+|.-+ T Consensus 2 KrI~IltsGGdaPGlNa~Ir~vv~--~a~~~g~ev~G~ 37 (186) T 3pfk_A 2 KRIGVLTSGGDSPGMNAAIRSVVR--KAIYHGVEVYGV 37 (186) T ss_dssp CEEEEEEESSCCTTHHHHHHHHHH--HHHHTTCEEEEE T ss_pred CEEEEECCCCCCHHHHHHHHHHHH--HHHHCCCEEEEE T ss_conf 889998768876899999999999--999779999998 No 126 >>1vcp_A Semliki forest virus capsid protein; virus coat protein, polyprotein, transmembrane, glycoprotein, nucleocapsid protein, viral protein; 3.00A {Semliki forest virus} (A:64-149) Probab=31.16 E-value=24 Score=13.09 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=10.9 Q ss_pred EEEECCCCEEEE Q ss_conf 897077858885 Q gi|254780834|r 209 PIRSSRGQVIAF 220 (648) Q Consensus 209 Pi~~~~g~~i~f 220 (648) ||.|-+|+|||. T Consensus 41 pi~DN~GrVVaI 52 (86) T 1vcp_A 41 PIFDNKGRVVAI 52 (86) T ss_dssp EEECTTSCEEEE T ss_pred CCCCCCCCEEEE T ss_conf 117688879999 No 127 >>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} (A:1-120) Probab=31.15 E-value=24 Score=13.09 Aligned_cols=93 Identities=12% Similarity=0.202 Sum_probs=47.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 8851112899999999986543332025689-988999999999999985899999999999999872412798999999 Q gi|254780834|r 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEA-NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 (648) Q Consensus 539 ~~L~~~~l~elL~~L~~~~~~~~~~~~~~e~-~~~d~~e~~~~~l~l~~r~~~L~r~l~ele~~l~e~~~~~d~e~~~~l 617 (648) ..+.-..+..-+.++.........|...... ....-...+...+.. ...+.....++...+.-+....|.+....+ T Consensus 23 ~~l~l~~~~~rl~eLe~~l~~p~fw~d~~~a~~i~ke~~~L~~~v~~---~~~l~~~~~dl~~~~el~~ee~D~e~~e~~ 99 (120) T 1gqe_A 23 GYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDT---LDQXKQGLEDVSGLLELAVEADDEETFNEA 99 (120) T ss_dssp HHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTCHHHHHHH T ss_pred HHCCHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 66798999999999999860972454999999999999999999999---999999999899999987502246799999 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999998841 Q gi|254780834|r 618 ISILHEVHIQIHQIESQ 634 (648) Q Consensus 618 ~~el~elk~~L~~l~~~ 634 (648) ..++.++.+++..++-. T Consensus 100 ~~el~~l~~~l~~lE~~ 116 (120) T 1gqe_A 100 VAELDALEEKLAQLEFR 116 (120) T ss_dssp HHHHHHHHHHHHHHGGG T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99999999999999874 No 128 >>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} (A:104-157) Probab=31.08 E-value=24 Score=13.08 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=21.3 Q ss_pred ECCCCCCCCCCEEEECCCC--EEEECCCCCCCCH Q ss_conf 3458888587879817897--4671368888789 Q gi|254780834|r 42 CCPFHDEKTPSFHCNDSKG--FYYCFSCHVKGDH 73 (648) Q Consensus 42 ~cPfh~ektpsf~v~~~~~--~~~cf~c~~~gd~ 73 (648) |||...-----+.|+..++ .-.|=.||..|++ T Consensus 2 LC~~C~NPET~~~i~~k~~~I~~~C~ACG~~s~v 35 (54) T 2e9h_A 2 LCPECENPETDLHVNPKKQTIGNSCKACGYRGML 35 (54) T ss_dssp SCTTTCCSCCEEEEETTTTEEEEECSSSCCEEEC T ss_pred ECCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCC T ss_conf 9899999865999935875898573236998863 No 129 >>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} (A:1-70,A:158-346) Probab=30.76 E-value=16 Score=14.70 Aligned_cols=63 Identities=11% Similarity=0.018 Sum_probs=37.1 Q ss_pred EEEEECCHHHHHHHHHCCCCCCHH---HHHCCCCHHHHHHHHHCCCE--E-EEEECCCCCCHHHHHHHH Q ss_conf 089971438899987435542113---43213662678988512681--8-996178866225777888 Q gi|254780834|r 273 FIILVEGYMDVLSLCQAGVQNVVS---SLGTALTEYQLRLLWKLSPR--I-VLCFDGDDPGLRAAYKAI 335 (648) Q Consensus 273 ~~i~vEGy~Dvi~l~~~G~~n~va---~~Gtalt~~~~~~l~r~~~~--v-vl~fDgD~AG~kAa~Ra~ 335 (648) +.|++=|-|||+..-..|.-..=| -.|+|.--+-++.|++...+ | ++++|+-+-|...+...+ T Consensus 60 ~~i~~~~H~D~~~~~~~~~~~~Ga~Dn~sGva~lLelar~l~~~~~~~ti~fv~~~~EE~g~~Gs~~~~ 128 (259) T 1vho_A 60 GKLAFFAHVDETAFETNGKVVGKALDNRASCGVLVKVLEFLKRYDHPWDVYVVFSVQEETGCLGALTGA 128 (259) T ss_dssp CEEEEEEECCBCCEEETTEEEETTHHHHHHHHHHHHHHHHHTTCCCSSEEEEEEECTTSSSHHHHHHTT T ss_pred CCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEE T ss_conf 738999715778997037488623214234788999999987336677742000022102676774210 No 130 >>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} (A:262-345,A:463-553) Probab=30.69 E-value=14 Score=15.28 Aligned_cols=71 Identities=14% Similarity=0.020 Sum_probs=35.5 Q ss_pred HHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEE Q ss_conf 89999850688535101244225677410345542059973452320121003465410000167168889707785888 Q gi|254780834|r 140 LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219 (648) Q Consensus 140 a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~ 219 (648) -+.=|+.||++++.|+.|-+.--+...++.+++ +.+..+. +...|.=..|.|+= +-.. -.+- T Consensus 31 Ti~glrRRG~~peai~~F~~~~Gvsk~~~~i~~--------~~le~~~--------R~~ld~~a~R~~~V-~~vp-vevr 92 (175) T 1qtq_A 31 TISGLRRRGYTAASIREFCKRIGVTKQDNTIEM--------ASLESCI--------REDLNENAPRAMAV-HALP-VEIR 92 (175) T ss_dssp BHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCH--------HHHHHHH--------HHHHHHHSCEECEE-TCEE-EEEE T ss_pred CHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCH--------HHHHHHH--------HHHHHHHCCCCEEE-CCEE-EEEE T ss_conf 189999869987999999999588887774267--------8799999--------97505306543168-7674-6999 Q ss_pred EECCCCCCC Q ss_conf 501001465 Q gi|254780834|r 220 FGGRTLSKG 228 (648) Q Consensus 220 f~gR~l~~~ 228 (648) ...+.+... T Consensus 93 lYd~Lf~~~ 101 (175) T 1qtq_A 93 LYDRLFSVP 101 (175) T ss_dssp EECCSBSSS T ss_pred ECCCCCCCC T ss_conf 367455668 No 131 >>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Lactobacillus salivarius UCC118} (A:1-64) Probab=30.62 E-value=19 Score=13.88 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=10.3 Q ss_pred HHHHHHHHHCCCCHHHHC Q ss_conf 578999985068853510 Q gi|254780834|r 138 KRLHYYLDERGIDSHAIE 155 (648) Q Consensus 138 ~~a~~yl~~Rg~~~~~~~ 155 (648) .+.++||.++|+++++|. T Consensus 36 ~Ei~~kL~~k~~~e~~i~ 53 (64) T 3e3v_A 36 KEVEDKLRSLDIHEDYIS 53 (64) T ss_dssp HHHHTTSGGGTCCHHHHH T ss_pred HHHHHHHHHCCCCHHHHH T ss_conf 999999986699999999 No 132 >>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} (A:) Probab=30.54 E-value=24 Score=13.01 Aligned_cols=30 Identities=20% Similarity=0.586 Sum_probs=22.8 Q ss_pred CEEEECCCCCCCCCCEE----EECCCCEEEECCCCC Q ss_conf 55753458888587879----817897467136888 Q gi|254780834|r 38 DYWACCPFHDEKTPSFH----CNDSKGFYYCFSCHV 69 (648) Q Consensus 38 ~~~~~cPfh~ektpsf~----v~~~~~~~~cf~c~~ 69 (648) .|+ ||..+-+=-++- ++|..+.|+|--|+. T Consensus 14 ~y~--Cp~C~~~ys~Lda~~Lld~~~~~F~C~~C~~ 47 (62) T 1vd4_A 14 SFK--CPVCSSTFTDLEANQLFDPMTGTFRCTFCHT 47 (62) T ss_dssp EEE--CSSSCCEEEHHHHHHHEETTTTEEBCSSSCC T ss_pred CEE--CCCCCCEECHHHHHHHCCCCCCEEEECCCCC T ss_conf 209--9898899467669871597899197358999 No 133 >>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} (A:84-98,A:399-592) Probab=29.97 E-value=25 Score=12.93 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=22.7 Q ss_pred CCCCCCHHHHHHCCCHHHHHHHHHHCCC Q ss_conf 5788888899720366889988641499 Q gi|254780834|r 353 LSRGEDPDSFIRCYGKTAFEKLIVESLP 380 (648) Q Consensus 353 LP~G~DPDe~ir~~G~eaf~~ll~~A~~ 380 (648) +.+..||+++++++|+|+++-++-.+.+ T Consensus 41 ~GN~i~~~e~~~~~g~D~lR~~ll~~~~ 68 (209) T 1iq0_A 41 NPDHPDKEEAARMVALGAIRFSMVKTEP 68 (209) T ss_dssp CTTCSCHHHHHHHHHHHHHHHHHHHSCT T ss_pred CCHHHHHHHHHHHHHHHHEEEECCCCCC T ss_conf 1103445567877615344532103576 No 134 >>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} (A:1-132,A:254-306) Probab=29.78 E-value=25 Score=12.91 Aligned_cols=34 Identities=35% Similarity=0.453 Sum_probs=17.5 Q ss_pred CEE-EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 818-996178866225777888888777536973067 Q gi|254780834|r 315 PRI-VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 (648) Q Consensus 315 ~~v-vl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~v 350 (648) ++| |+.--||.+|.||+.|++=. .....|.+|.- T Consensus 3 krI~IltsGGdaPGlNa~Ir~vv~--~a~~~g~~v~G 37 (185) T 1pfk_A 3 KKIGVLTSGGDAPGMNAAIRGVVR--SALTEGLEVMG 37 (185) T ss_dssp CEEEEEECSSCCTTHHHHHHHHHH--HHHHTTCEEEE T ss_pred CEEEEECCCCCCHHHHHHHHHHHH--HHHHCCCEEEE T ss_conf 649998658886778999999999--99877999999 No 135 >>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A (A:) Probab=29.68 E-value=25 Score=12.90 Aligned_cols=36 Identities=22% Similarity=0.485 Sum_probs=22.6 Q ss_pred HHHHHHHHHHH-HCCCCCHHHHHHHHHCCCCHHHHCC Q ss_conf 99999999997-3267775789999850688535101 Q gi|254780834|r 121 IEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEM 156 (648) Q Consensus 121 ~~~~~~~~~~~-l~~~~~~~a~~yl~~Rg~~~~~~~~ 156 (648) .+-|..|-++- ..+..-..-+.||++.||+++-|+. T Consensus 18 i~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~ 54 (70) T 2w84_A 18 IATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDM 54 (70) T ss_dssp HHHHHHHHCSTTGGGSCHHHHHHHHHHTTCCHHHHHH T ss_pred HHHHHHHHCCHHHHCCCHHHHHHHHHHCCCCHHHHHH T ss_conf 9999999568212018689999999975999999999 No 136 >>1efd_N Ferrichrome-binding periplasmic protein; periplasmic binding protein-siderophore complex, FHUD complex with gallichrome; HET: GCR; 1.90A {Escherichia coli} (N:141-244) Probab=29.20 E-value=25 Score=12.89 Aligned_cols=69 Identities=23% Similarity=0.202 Sum_probs=40.8 Q ss_pred HHHHHCCCCCCHHHHHCC--CCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH--HHHHHHCCCCEEEEECCC Q ss_conf 998743554211343213--662678988512681899617886622577788888--877753697306752578 Q gi|254780834|r 284 LSLCQAGVQNVVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL--VLCHLIPGNRVNFVLLSR 355 (648) Q Consensus 284 i~l~~~G~~n~va~~Gta--lt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~--~l~~l~~g~~v~vv~LP~ 355 (648) -.+-.+|..|+.+..++. .+.--...|..+-+.++|+.+.+.......+..-.. -++..+.| +|..+|. T Consensus 29 ~l~~~~G~~n~~~~~~~~~~~~~is~E~l~~~~pd~ii~~~~~~~~~~~~l~~~p~~~~l~Avk~~---~V~~i~~ 101 (104) T 1efd_N 29 EILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAG---RFQRVPA 101 (104) T ss_dssp HHHHHTTCCBSCCSCCCTTSEEEECGGGGGGCCSCEEEEECSSCHHHHHHHHTSHHHHHCHHHHTT---CEEEECC T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCC---CEEEECC T ss_conf 999990992434123566787414899996549998999918974789999809402068620189---2899696 No 137 >>1svp_A Sindbis virus capsid protein; chymotrypsin-like serine, mutant, coat protein, viral protein; 2.00A {Sindbis virus} (A:73-161) Probab=29.14 E-value=25 Score=12.82 Aligned_cols=12 Identities=42% Similarity=0.808 Sum_probs=10.9 Q ss_pred EEEECCCCEEEE Q ss_conf 897077858885 Q gi|254780834|r 209 PIRSSRGQVIAF 220 (648) Q Consensus 209 Pi~~~~g~~i~f 220 (648) ||.|-+|+|||. T Consensus 41 pi~DN~GkVVaI 52 (89) T 1svp_A 41 PIMDNSGRVVAI 52 (89) T ss_dssp EEECTTSCEEEE T ss_pred CCCCCCCCEEEE T ss_conf 117688879999 No 138 >>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} (A:178-264) Probab=29.10 E-value=25 Score=12.82 Aligned_cols=12 Identities=42% Similarity=0.808 Sum_probs=10.9 Q ss_pred EEEECCCCEEEE Q ss_conf 897077858885 Q gi|254780834|r 209 PIRSSRGQVIAF 220 (648) Q Consensus 209 Pi~~~~g~~i~f 220 (648) ||.|-+|+|||. T Consensus 41 pi~DN~GrVVaI 52 (87) T 1kxf_A 41 PIMDNSGRVVAI 52 (87) T ss_dssp EEECTTSCEEEE T ss_pred CCCCCCCCEEEE T ss_conf 525688768999 No 139 >>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} (A:) Probab=29.09 E-value=25 Score=12.82 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=32.8 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999998724127989999999999999999999884 Q gi|254780834|r 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 (648) Q Consensus 590 ~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~~ 633 (648) .|-.++..++.-|.++.+.+.-|...-|-.-|++++.+..+.+. T Consensus 6 PLlqQi~~Ik~yI~QAk~a~R~DEV~~Le~NLreLq~e~~~qq~ 49 (51) T 1yzm_A 6 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQT 49 (51) T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999999999999999833428999999999999999999875 No 140 >>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens} (A:) Probab=29.03 E-value=25 Score=12.81 Aligned_cols=40 Identities=5% Similarity=0.088 Sum_probs=28.3 Q ss_pred EEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHH-CCCC Q ss_conf 46713-6888878-989989885999799999999981-8858 Q gi|254780834|r 61 FYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIA-GVPL 100 (648) Q Consensus 61 ~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~-gi~~ 100 (648) .-||- |=|.+|- +.-++|...++++.+|++.+..+- ++.+ T Consensus 87 lVHC~~G~~RS~~vv~ayLm~~~~~~~~~A~~~v~~~Rp~~~~ 129 (149) T 1zzw_A 87 LIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPIISP 129 (149) T ss_dssp EEECSSSSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHCTTCCC T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC T ss_conf 6685555563599999999998497999999999998997799 No 141 >>3eol_A Isocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3e5b_A (A:349-433) Probab=28.88 E-value=25 Score=12.79 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=19.1 Q ss_pred EEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHH Q ss_conf 9971438899987435542113432136626789 Q gi|254780834|r 275 ILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 (648) Q Consensus 275 i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~ 308 (648) .+==||+|.+.-.--|=..+++.||-+.|++|.. T Consensus 48 ~vGa~y~D~v~~~i~gG~Sst~Amg~stte~QF~ 81 (85) T 3eol_A 48 EVGTGYFDAVSLAITGGQSSTTAMKESTETAQFK 81 (85) T ss_dssp ----CHHHHHHHHHCC------------------ T ss_pred HCCCCHHHHHHHHHCCCCHHHHHCCCCCCHHHCC T ss_conf 1065588989998628830444236996566445 No 142 >>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 2.30A {Leishmania major} (A:) Probab=28.83 E-value=26 Score=12.78 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=6.8 Q ss_pred EEECCCCEEEEECCCC Q ss_conf 9707785888501001 Q gi|254780834|r 210 IRSSRGQVIAFGGRTL 225 (648) Q Consensus 210 i~~~~g~~i~f~gR~l 225 (648) |....|.++.|.-... T Consensus 98 I~K~~~~~L~f~c~~~ 113 (203) T 1yqf_A 98 ITQKNGQTMQADLSIE 113 (203) T ss_dssp EECTTSCEEEEEEEEE T ss_pred EEECCCCEEEEEEEEC T ss_conf 9968998799999964 No 143 >>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (I:54-122) Probab=28.51 E-value=26 Score=12.74 Aligned_cols=29 Identities=24% Similarity=0.541 Sum_probs=22.2 Q ss_pred EECCCCCCCCCCEEEEC-------CCCEEEECCCCC Q ss_conf 53458888587879817-------897467136888 Q gi|254780834|r 41 ACCPFHDEKTPSFHCND-------SKGFYYCFSCHV 69 (648) Q Consensus 41 ~~cPfh~ektpsf~v~~-------~~~~~~cf~c~~ 69 (648) ..||-.....-.|...+ ..-||.|-.||. T Consensus 20 ~~Cp~Cg~~ea~f~q~QtRsaDE~mT~Fy~C~~C~~ 55 (69) T 1twf_I 20 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSH 55 (69) T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCC T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCC T ss_conf 678667998711687444667889739999699999 No 144 >>1ep5_B Capsid protein C, coat protein C; beta barrel, hydrolase; 2.30A {Venezuelan equine encephalitis virus} (B:71-157) Probab=28.34 E-value=26 Score=12.72 Aligned_cols=12 Identities=42% Similarity=0.841 Sum_probs=10.9 Q ss_pred EEEECCCCEEEE Q ss_conf 897077858885 Q gi|254780834|r 209 PIRSSRGQVIAF 220 (648) Q Consensus 209 Pi~~~~g~~i~f 220 (648) ||.|-+|+|||. T Consensus 41 pi~DN~GrVVaI 52 (87) T 1ep5_B 41 PILDNQGRVVAI 52 (87) T ss_dssp EEECTTSCEEEE T ss_pred CCCCCCCCEEEE T ss_conf 117688869999 No 145 >>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} (A:1-24,A:153-262) Probab=28.25 E-value=26 Score=12.70 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=17.7 Q ss_pred EEEECCCCEEEEECCCCCCCCCC Q ss_conf 89707785888501001465530 Q gi|254780834|r 209 PIRSSRGQVIAFGGRTLSKGESV 231 (648) Q Consensus 209 Pi~~~~g~~i~f~gR~l~~~~~~ 231 (648) |+.|..|+|||.....+..+..+ T Consensus 85 Pl~n~~GevVGI~~~~~~~~~~~ 107 (134) T 1ky9_A 85 ALVNLNGELIGINTAILAPDGGN 107 (134) T ss_dssp EEECTTSCEEEEEECSSTTSCCC T ss_pred EEEECCCEEEEEEEEEECCCCCC T ss_conf 04945888977888777058886 No 146 >>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} (B:) Probab=28.17 E-value=26 Score=12.69 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=29.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999872412798999999999999999999988 Q gi|254780834|r 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 (648) Q Consensus 590 ~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~ 632 (648) .|-.++..++.-|.++...+.-|...-|-.-|++++.++.+.+ T Consensus 24 PLlqQi~~ik~yI~QAk~a~r~dEV~~Le~NLreLq~e~~~qq 66 (69) T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69) T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 0999999999999999981441899999999999999999987 No 147 >>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single particle cryo-EM, high resolution, late protein, virion; 4.20A {Bovine papillomavirus type 1} (F:) Probab=28.17 E-value=23 Score=13.12 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=5.8 Q ss_pred ECCCC--EEEECC Q ss_conf 17897--467136 Q gi|254780834|r 56 NDSKG--FYYCFS 66 (648) Q Consensus 56 ~~~~~--~~~cf~ 66 (648) +|++. .|.|=| T Consensus 88 nPe~eRLVW~l~G 100 (495) T 3iyj_F 88 NPSKERLVWAVIG 100 (495) T ss_dssp CTTTEEEEEEEEE T ss_pred CCCCCEEEEEEEE T ss_conf 9876567778888 No 148 >>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} (A:) Probab=27.85 E-value=26 Score=12.65 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=17.2 Q ss_pred EEEEEEEECCCCEEEEECCCCC Q ss_conf 1688897077858885010014 Q gi|254780834|r 205 RLIFPIRSSRGQVIAFGGRTLS 226 (648) Q Consensus 205 Ri~fPi~~~~g~~i~f~gR~l~ 226 (648) ++.-||+|..|+++|.-+-.++ T Consensus 103 ~~a~PI~~~~G~~iGvv~~~~~ 124 (131) T 1p0z_A 103 RGKSPIQDATGKVIGIVSVGYT 124 (131) T ss_dssp EEEEEEECTTCCEEEEEEEEEE T ss_pred EEEEEEECCCCCEEEEEEEEEE T ss_conf 9999679799979999999988 No 149 >>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} (A:258-555) Probab=27.68 E-value=27 Score=12.62 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=32.8 Q ss_pred HHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEE-EEEECCC Q ss_conf 38899987435542113432136626789885126818-9961788 Q gi|254780834|r 280 YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRI-VLCFDGD 324 (648) Q Consensus 280 y~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~v-vl~fDgD 324 (648) .-|++...+..+--.++..|-+||++.++.+.+.++++ ||.+=+= T Consensus 95 l~e~v~~ikp~vlIG~S~~~g~fteevi~~Ma~~~~~PIIFaLSNP 140 (298) T 1gq2_A 95 LEDIVKDIKPTVLIGVAAIGGAFTQQILQDXAAFNKRPIIFALSNP 140 (298) T ss_dssp HHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSS T ss_pred HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCC T ss_conf 4567632487779951434687889999999840899889980797 No 150 >>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function, protease, thermophilic, SELF-compartmentalising, hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2pe3_A (A:1-74,A:170-354) Probab=27.66 E-value=18 Score=14.18 Aligned_cols=40 Identities=20% Similarity=0.040 Sum_probs=25.5 Q ss_pred HHCCCCHHHHHHHHHCCCEEEEE-ECCCCCCHHHHHHHHHH Q ss_conf 32136626789885126818996-17886622577788888 Q gi|254780834|r 298 LGTALTEYQLRLLWKLSPRIVLC-FDGDDPGLRAAYKAIDL 337 (648) Q Consensus 298 ~Gtalt~~~~~~l~r~~~~vvl~-fDgD~AG~kAa~Ra~e~ 337 (648) .|+|.--+-++.|++.-..|+++ +|+-+-|...+...++. T Consensus 93 sGva~lLe~ar~l~~~~~~i~fv~~~~EE~G~~Gs~~~~~~ 133 (259) T 2vpu_A 93 ICLYAMIEAARQLGDHEADIYIVGSVQEEVGLRGARVASYA 133 (259) T ss_dssp HHHHHHHHHHHHCCCCSSEEEEEECSCCTTTSHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCC T ss_conf 10667899999975223432001222157643113223445 No 151 >>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} (A:1-152) Probab=27.65 E-value=27 Score=12.62 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=35.2 Q ss_pred HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH Q ss_conf 678988512681899617886622577788888877753697306752578888889972 Q gi|254780834|r 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 (648) Q Consensus 305 ~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir 364 (648) ..++.+.+-++.||++-|.|.-|..=++-.++.+-.-......++=+.+ ....|.+..+ T Consensus 86 ~~lk~~~~~~d~iiiatD~DrEGE~I~~~i~~~~~~~~~~~~~v~R~~f-ssiT~~~I~~ 144 (152) T 1i7d_A 86 NVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQLAPEKRQQVQRCLI-NDLNPQAVER 144 (152) T ss_dssp HHHHHHHHHCSEEEEECCSSHHHHHHHHHHHHHTTCCHHHHHTCEECCC-SCCSHHHHHH T ss_pred HHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEE-CCCCHHHHHH T ss_conf 9999998559989989899813419999999985623347885389996-1579999999 No 152 >>3fos_A Sensor protein; sensor histidine kinase domain, bacillus subtilis subsp. subtilis STR. 168, PSI-2, protein structure initiative; 2.48A {Bacillus subtilis subsp} (A:47-146) Probab=27.65 E-value=27 Score=12.62 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=37.7 Q ss_pred HHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCE----EEEEEEECCCCEEE Q ss_conf 98506885351012442256774103455420599734523201210034654100001671----68889707785888 Q gi|254780834|r 144 LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNR----LIFPIRSSRGQVIA 219 (648) Q Consensus 144 l~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~R----i~fPi~~~~g~~i~ 219 (648) +...|.--..-..-..|+-+.++.+..+.+...+.... .-++++--+. +-.||+|..|+++| T Consensus 27 ~~~~G~~~~~~~~~~~~~d~~~r~wf~~a~~~~~~~is--------------~~~~~~~tg~~~i~~s~pi~d~~g~~~G 92 (100) T 3fos_A 27 LNAKGDVTASTTELKTKVNLADRSFFIKAKETKKTVIS--------------DSYSSRITGQPIFTICVPVLDSKRNVTD 92 (100) T ss_dssp EETTCBEEEESSCCSSCCBCTTSHHHHHHHHHCSCEEC--------------CCEECTTTCSEEEEEEEEEECSSCCEEE T ss_pred ECCCCCEEECCCCCCCCCCHHHCHHHHHHHHCCCCCCC--------------CEEEECCCCCEEEEEEEEEECCCCCEEE T ss_conf 95999789805766788893446367777633774213--------------3033046784589999867968997899 Q ss_pred EECCCC Q ss_conf 501001 Q gi|254780834|r 220 FGGRTL 225 (648) Q Consensus 220 f~gR~l 225 (648) +-+-.+ T Consensus 93 vv~~~i 98 (100) T 3fos_A 93 YLVAAI 98 (100) T ss_dssp EEEEEE T ss_pred EEEEEE T ss_conf 999996 No 153 >>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus} (A:) Probab=27.60 E-value=27 Score=12.61 Aligned_cols=37 Identities=22% Similarity=0.495 Sum_probs=24.5 Q ss_pred HHHHHHHHHHHH-HCCCCCHHHHHHHHHCCCCHHHHCC Q ss_conf 999999999997-3267775789999850688535101 Q gi|254780834|r 120 LIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEM 156 (648) Q Consensus 120 ~~~~~~~~~~~~-l~~~~~~~a~~yl~~Rg~~~~~~~~ 156 (648) +.+-|..|-++- ..+..-..-+.||++.||+++-|+. T Consensus 12 li~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~ 49 (54) T 3ff5_A 12 LIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDL 49 (54) T ss_dssp HHHHHHHHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHH T ss_pred HHHHHHHHHCCHHHCCCCHHHHHHHHHHCCCCHHHHHH T ss_conf 99999999568212018689999999976999999999 No 154 >>2pfs_A USP, universal stress protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.25A {Nitrosomonas europaea atcc 19718} (A:) Probab=27.46 E-value=27 Score=12.59 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=29.9 Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 6818996178866225777888888777536973067525 Q gi|254780834|r 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 (648) Q Consensus 314 ~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~L 353 (648) .++|.+++|++....+|...|+.++... +-.+.++.. T Consensus 6 ~k~ILV~vd~s~~s~~al~~a~~~a~~~---~~~i~~lhv 42 (150) T 2pfs_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQI---GARLSLIHV 42 (150) T ss_dssp CSEEEEECCCCTTHHHHHHHHHHHHHHH---TCEEEEEEE T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHC---CCCEEEEEE T ss_conf 9879999839989999999999999872---990688888 No 155 >>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} PDB: 1vkp_A* 2q3u_A* 3h7k_A* (X:163-296) Probab=27.40 E-value=27 Score=12.59 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=43.3 Q ss_pred HHHHHCCCCCCHH-H---HHCCCCHHHHHHHHHCCC--EEEEEECCCCCCHHH-HHHHHHHHHHHH--HCCCCEEEEECC Q ss_conf 9987435542113-4---321366267898851268--189961788662257-778888887775--369730675257 Q gi|254780834|r 284 LSLCQAGVQNVVS-S---LGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRA-AYKAIDLVLCHL--IPGNRVNFVLLS 354 (648) Q Consensus 284 i~l~~~G~~n~va-~---~Gtalt~~~~~~l~r~~~--~vvl~fDgD~AG~kA-a~Ra~e~~l~~l--~~g~~v~vv~LP 354 (648) .-....|++.++= + .|.--|..|+--+-||+. .|+++...|...-+. .+++..-.|... ..|..++|+.|| T Consensus 36 ~L~~~LGv~kviWL~~G~~~dd~TdgHID~~arF~~~~~il~~~~~d~~d~~~~~~~~~~~~L~~~~da~G~~~~i~~lP 115 (134) T 3h7c_X 36 ELKKYLGVQSFIWLPRGLYGDEDTNGHIDNXCCFARPGVVLLSWTDDETDPQYERSVEALSVLSNSIDARGRKIQVIKLY 115 (134) T ss_dssp HHHHHHCCCEEEEESCCCTTCGGGTCCGGGTEEEEETTEEEEEECCCTTSHHHHHHHHHHHHHHTCBCTTSCBCEEEEEE T ss_pred HHHHHHCCCEEEEECCCEECCCCCCCCCHHEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 99986297559997571207878765500048972898079874288768178999999999999987448853379712 Q ss_pred C Q ss_conf 8 Q gi|254780834|r 355 R 355 (648) Q Consensus 355 ~ 355 (648) . T Consensus 116 ~ 116 (134) T 3h7c_X 116 I 116 (134) T ss_dssp C T ss_pred C T ss_conf 4 No 156 >>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A (A:165-334) Probab=27.30 E-value=27 Score=12.57 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=6.7 Q ss_pred CHHHHHHCCCHHHHHHHH Q ss_conf 888997203668899886 Q gi|254780834|r 358 DPDSFIRCYGKTAFEKLI 375 (648) Q Consensus 358 DPDe~ir~~G~eaf~~ll 375 (648) |||.-||..-.+.+..+. T Consensus 22 D~~~~VR~~A~~~l~~i~ 39 (170) T 2iw3_A 22 DTKKEVKAAATAAXTKAT 39 (170) T ss_dssp CSSHHHHHHHHHHHHHHG T ss_pred CCCHHHHHHHHHHHHHHH T ss_conf 697999999999999997 No 157 >>2be1_A Serine/threonine-protein kinase/endoribonuclease IRE1; transcription; 2.98A {Saccharomyces cerevisiae} (A:1-41,A:205-272) Probab=26.94 E-value=27 Score=12.52 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=5.2 Q ss_pred CCCCCCCEEEEEE Q ss_conf 0000167168889 Q gi|254780834|r 198 SYDRFRNRLIFPI 210 (648) Q Consensus 198 ~~d~Fr~Ri~fPi 210 (648) |+..|++|-+..| T Consensus 52 yitPF~dkSLlAi 64 (109) T 2be1_A 52 CIAPFRDKSLLAS 64 (109) T ss_dssp CEEEETTTEEEEE T ss_pred EEEECCCCEEEEE T ss_conf 0641589849999 No 158 >>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Lactobacillus salivarius UCC118} (A:65-109) Probab=26.89 E-value=27 Score=12.52 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=23.8 Q ss_pred HHHHHHHHHHH-CCCCCHHHHHH-HHHCCCCHHHHCC Q ss_conf 99999999973-26777578999-9850688535101 Q gi|254780834|r 122 EVATDFFHHSL-KNARDKRLHYY-LDERGIDSHAIEM 156 (648) Q Consensus 122 ~~~~~~~~~~l-~~~~~~~a~~y-l~~Rg~~~~~~~~ 156 (648) +.|..|-+... ..+.|+..... |..+|+++++|+. T Consensus 5 ~fA~~~vr~r~~~~~~Gp~~IrqeL~qKGI~~~~I~~ 41 (45) T 3e3v_A 5 NYAESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIAED 41 (45) T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHH T ss_conf 9999999999870254089999999986999999999 No 159 >>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae} (A:) Probab=26.46 E-value=28 Score=12.45 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=21.4 Q ss_pred CCCEEEEECCCCCCHHHHHHCCCHHHHHHH Q ss_conf 973067525788888899720366889988 Q gi|254780834|r 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 (648) Q Consensus 345 g~~v~vv~LP~G~DPDe~ir~~G~eaf~~l 374 (648) |---.+|.||+|+|-.+|+-.+-.+-|.++ T Consensus 61 ~~l~~~V~lP~g~D~neWlA~~~~~ff~~i 90 (236) T 2hjn_A 61 GVLNQAVKLPRGEDENEWLAVHCVDFYNQI 90 (236) T ss_dssp GC---CCSCCTTCCHHHHHHHHHHHHHHHH T ss_pred CCHHHHHCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 679999269299870411899899999999 No 160 >>1ep5_B Capsid protein C, coat protein C; beta barrel, hydrolase; 2.30A {Venezuelan equine encephalitis virus} (B:1-70) Probab=26.02 E-value=28 Score=12.39 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=16.1 Q ss_pred EEEEEEECCCCEEE----EECCCCCCC Q ss_conf 68889707785888----501001465 Q gi|254780834|r 206 LIFPIRSSRGQVIA----FGGRTLSKG 228 (648) Q Consensus 206 i~fPi~~~~g~~i~----f~gR~l~~~ 228 (648) -+|||.+ .|+|+| .|||++.+- T Consensus 8 ~~F~v~~-dG~v~GyA~~vggkv~KPl 33 (70) T 1ep5_B 8 KTFPIML-EGKINGYACVVGGKLFRPM 33 (70) T ss_dssp CEEEEEE-TTEEEEEEEEETTEEEEET T ss_pred CEEEEEE-CCEEEEEEEEECCEEECCC T ss_conf 4645676-4614578999747530232 No 161 >>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=26.01 E-value=15 Score=14.83 Aligned_cols=15 Identities=33% Similarity=0.766 Sum_probs=9.1 Q ss_pred EEEECCCCCCCCHHH Q ss_conf 467136888878989 Q gi|254780834|r 61 FYYCFSCHVKGDHLS 75 (648) Q Consensus 61 ~~~cf~c~~~gd~~~ 75 (648) -|-||-||..|-.|+ T Consensus 7 ~YiC~rCg~~GH~Ik 21 (55) T 2ysa_A 7 GYTCFRCGKPGHYIK 21 (55) T ss_dssp SCCCTTTCCTTSCGG T ss_pred CCEEECCCCCCCCCE T ss_conf 878756899881046 No 162 >>2q1f_A Chondroitinase; alpha plus beta, lyase; 2.85A {Bacteroides thetaiotaomicron} (A:1-190) Probab=25.77 E-value=19 Score=14.03 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=31.3 Q ss_pred CCCCCCCCCCCCHHHHHHHC--CCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEE-ECCCCEEEEECCCCCCCCCCE Q ss_conf 12442256774103455420--599734523201210034654100001671688897-077858885010014655300 Q gi|254780834|r 156 MFKLGYAPDSRYSLREHLRQ--KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIR-SSRGQVIAFGGRTLSKGESVK 232 (648) Q Consensus 156 ~f~lG~ap~~~~~l~~~l~~--~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~-~~~g~~i~f~gR~l~~~~~~K 232 (648) .|+|.|. +|..-.--... .|-..+.+.+--+..+...|. .|-||||||+. |. |.-.+|...= T Consensus 117 ~~~LnF~--GWRa~wV~y~~dm~g~~~~g~~~~ri~AP~~~G~----lflD~l~~~~~vd~---------r~~t~D~QvP 181 (190) T 2q1f_A 117 PFGINFK--GWRAAWVCYERDXQGTPEEGXNELRIVAPDAKGR----LFIDHLITATKVDA---------RQQTADLQVP 181 (190) T ss_dssp EEECCCS--EEEEEEEETTTTSEECCCTTCCEEEEECCSSCEE----EEEEEEEEEEEECT---------TCBCCCSSCT T ss_pred EEEEECC--HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC----EEEEEEEECCCCCC---------CCCCCCCCCC T ss_conf 8877342--1767665467760799768823899974588982----89999980355445---------6578643366 Q ss_pred ECCCC Q ss_conf 10387 Q gi|254780834|r 233 YLNSP 237 (648) Q Consensus 233 YlNSp 237 (648) |+|+. T Consensus 182 fvN~~ 186 (190) T 2q1f_A 182 FVNAG 186 (190) T ss_dssp TTTTT T ss_pred CCCCC T ss_conf 66755 No 163 >>1jmu_B Protein MU-1; protein-protein complex, jelly roll, zinc finger, viral protein; HET: BOG; 2.80A {Reovirus SP} (B:1-145) Probab=25.42 E-value=26 Score=12.76 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=11.8 Q ss_pred HHHHHHHCCCCHHHHC Q ss_conf 8999985068853510 Q gi|254780834|r 140 LHYYLDERGIDSHAIE 155 (648) Q Consensus 140 a~~yl~~Rg~~~~~~~ 155 (648) -|+||..||+++++.+ T Consensus 79 dR~yLda~gv~~~s~~ 94 (145) T 1jmu_B 79 NREFLDKLRVLSVSPK 94 (145) T ss_dssp THHHHHHTTCCCSCCC T ss_pred HHHHHHCCCCCCCCCE T ss_conf 0776630376766532 No 164 >>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus bulgaricus, transferase; 1.85A {Lactobacillus delbrueckii subsp} (A:1-131,A:253-303) Probab=25.42 E-value=29 Score=12.30 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=5.8 Q ss_pred CEECCCCCCCCCCCC Q ss_conf 001038767653521 Q gi|254780834|r 231 VKYLNSPETILFHKG 245 (648) Q Consensus 231 ~KYlNSpeT~if~K~ 245 (648) ..++|++-|.+-.-+ T Consensus 58 ~~i~~~GGtiLgtsR 72 (182) T 1zxx_A 58 AHLINVSGTFLYSAR 72 (182) T ss_dssp TTCTTCCSCTTCCCC T ss_pred HHHHHCCCCCCCCCC T ss_conf 767733774013577 No 165 >>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} (A:) Probab=25.12 E-value=29 Score=12.26 Aligned_cols=28 Identities=11% Similarity=-0.001 Sum_probs=10.4 Q ss_pred CCCCCCHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 8888789899898859997999999999 Q gi|254780834|r 67 CHVKGDHLSFLSALLGCSFIESVQRLAA 94 (648) Q Consensus 67 c~~~gd~~~f~~~~~~~~f~ea~~~la~ 94 (648) +|.+|-++--++-..+++..||+..+.+ T Consensus 107 ~~RSg~~~~aylm~~~~~~~~A~~~vr~ 134 (159) T 1rxd_A 107 LGRAPVLVALALIEGGXKYEDAVQFIRQ 134 (159) T ss_dssp STTHHHHHHHHHHHTTCCHHHHHHHHHT T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 8746999999999919799999999997 No 166 >>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens} (A:) Probab=25.04 E-value=15 Score=14.78 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=9.4 Q ss_pred HHHHCCCCCCHHHHHCC Q ss_conf 98743554211343213 Q gi|254780834|r 285 SLCQAGVQNVVSSLGTA 301 (648) Q Consensus 285 ~l~~~G~~n~va~~Gta 301 (648) .++..|++ ..||.||+ T Consensus 45 ~l~~~G~~-i~AT~gT~ 60 (143) T 2yvq_A 45 QLHNEGFK-LFATEATS 60 (143) T ss_dssp HHHTTTCE-EEEEHHHH T ss_pred HHHHCCEE-EEECHHHH T ss_conf 99750714-67438989 No 167 >>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} PDB: 1xm0_A (A:14-144) Probab=24.66 E-value=30 Score=12.20 Aligned_cols=12 Identities=8% Similarity=0.066 Sum_probs=4.3 Q ss_pred CCHHHHCCCCCC Q ss_conf 885351012442 Q gi|254780834|r 149 IDSHAIEMFKLG 160 (648) Q Consensus 149 ~~~~~~~~f~lG 160 (648) ++.+-...+.-| T Consensus 17 ftg~y~~~~~~G 28 (131) T 3e0o_A 17 FQNEYWDHKEEG 28 (131) T ss_dssp TCSTTSSCCCSE T ss_pred CCCCCCCCCCCE T ss_conf 987776788886 No 168 >>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} (A:) Probab=24.56 E-value=30 Score=12.18 Aligned_cols=37 Identities=32% Similarity=0.362 Sum_probs=29.7 Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 6818996178866225777888888777536973067525 Q gi|254780834|r 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 (648) Q Consensus 314 ~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~L 353 (648) -++|.+++|+...+++|...+++++... +-.+.++.. T Consensus 2 ~~~iLv~vd~s~~~~~al~~a~~la~~~---~~~i~ll~V 38 (137) T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAH---GARLIVVHA 38 (137) T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHH---TCEEEEEEE T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHC---CCEEEEEEE T ss_conf 9839999889989999999999999875---999999987 No 169 >>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-fuoric acid, oxidoreductase; HET: FAD; 1.30A {Bacillus SP} (A:1-87,A:144-217,A:323-389) Probab=24.37 E-value=19 Score=14.06 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=9.7 Q ss_pred HHHHHHHCCCCHHHHCCCCC Q ss_conf 89999850688535101244 Q gi|254780834|r 140 LHYYLDERGIDSHAIEMFKL 159 (648) Q Consensus 140 a~~yl~~Rg~~~~~~~~f~l 159 (648) |-.+|.++|++--++++-.. T Consensus 18 aA~~la~~G~~v~vie~~~~ 37 (228) T 2gf3_A 18 AGYQLAKQGVKTLLVDAFDP 37 (228) T ss_dssp HHHHHHHTTCCEEEECSSCS T ss_pred HHHHHHHCCCCEEEEECCCC T ss_conf 99999978995899955899 No 170 >>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.97A {Archaeoglobus fulgidus} (A:) Probab=24.26 E-value=30 Score=12.14 Aligned_cols=38 Identities=21% Similarity=0.075 Sum_probs=25.9 Q ss_pred CCEEEEEECCCC-CCHHHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 681899617886-62257778888887775369730675257 Q gi|254780834|r 314 SPRIVLCFDGDD-PGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 (648) Q Consensus 314 ~~~vvl~fDgD~-AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP 354 (648) ..+|+++.|++. ..++|...++.++... |-.+.++..- T Consensus 24 ~~~ilv~vd~~s~~s~~~l~~a~~la~~~---~~~l~~l~v~ 62 (155) T 3dlo_A 24 YXPIVVAVDKKSDRAERVLRFAAEEARLR---GVPVYVVHSL 62 (155) T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHH---TCCEEEEEEE T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHC---CCEEEEEEEE T ss_conf 51589998797988999999999999865---9949999986 No 171 >>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP} (A:) Probab=24.16 E-value=30 Score=12.12 Aligned_cols=39 Identities=13% Similarity=0.032 Sum_probs=29.6 Q ss_pred HCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHH Q ss_conf 506885351012442256774103455420599734523 Q gi|254780834|r 146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 (648) Q Consensus 146 ~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~ 184 (648) .=|++..++.++.-|-..++++.|...+.--|++.+.+. T Consensus 33 ~~gvs~~~i~~~e~G~~~p~~~~l~~ia~~~~v~~~~l~ 71 (82) T 3clc_A 33 KSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFF 71 (82) T ss_dssp HHTSCHHHHHHHHTTCCCCBHHHHHHHHHHHTCCHHHHH T ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH T ss_conf 557479899999769999999999999999698999997 No 172 >>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum} (A:1-14,A:56-118) Probab=23.86 E-value=30 Score=12.08 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=17.2 Q ss_pred EEEEEEECCCCEEEEECCCCC Q ss_conf 688897077858885010014 Q gi|254780834|r 206 LIFPIRSSRGQVIAFGGRTLS 226 (648) Q Consensus 206 i~fPi~~~~g~~i~f~gR~l~ 226 (648) ...||+|..|++++|-|-..| T Consensus 55 ~~~pi~d~~G~i~~~iGi~~D 75 (77) T 3icy_A 55 HXRSSFSDDGLFSGIDGILCE 75 (77) T ss_dssp EEEEEECTTSCEEEEEEEEEE T ss_pred EEEEEECCCCCEEEEEEEEEE T ss_conf 999999999799999999997 No 173 >>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed oxyanion HOLE; 2.00A {Equine arteritis virus} (A:1-149) Probab=23.77 E-value=31 Score=12.06 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=8.1 Q ss_pred CCEEEECC-CCCCCC Q ss_conf 97467136-888878 Q gi|254780834|r 59 KGFYYCFS-CHVKGD 72 (648) Q Consensus 59 ~~~~~cf~-c~~~gd 72 (648) +++..||. ||.+|. T Consensus 102 ~~~afcfT~cGDSGS 116 (149) T 1mbm_A 102 GEVCLAWTTSGDSGS 116 (149) T ss_dssp SSCEECCCCGGGTTC T ss_pred CCEEEEECCCCCCCC T ss_conf 854899815788899 No 174 >>1ev0_A MINE; topological specificity, cell division, mincd, minicell, cell cycle; NMR {Escherichia coli} (A:) Probab=23.58 E-value=25 Score=12.84 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=15.8 Q ss_pred CHHHHHHHHHHCCHHHHHHHHCCCEEC Q ss_conf 888999998748888875412221015 Q gi|254780834|r 4 PRDFIKDLLIHIPISNLIGQYVDWDRR 30 (648) Q Consensus 4 ~~~~i~~i~~~~~i~~vv~~~v~l~~~ 30 (648) .++++..++. +|.+||+.||+.... T Consensus 5 ~pdyLp~L~~--Eil~VI~KyV~Id~d 29 (58) T 1ev0_A 5 EPHYLPQLRK--DILEVICKYVQIDPE 29 (58) T ss_dssp TTSSHHHHHH--HHHHHHHHHSCCCGG T ss_pred CCHHHHHHHH--HHHHHHHHHEEECHH T ss_conf 8156999999--999999875885468 No 175 >>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli} (A:62-108) Probab=23.49 E-value=31 Score=12.02 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=22.4 Q ss_pred HHHHHHHHHHCCCCCHHHHHH-HHHCCCCHHHHCC Q ss_conf 999999997326777578999-9850688535101 Q gi|254780834|r 123 VATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEM 156 (648) Q Consensus 123 ~~~~~~~~~l~~~~~~~a~~y-l~~Rg~~~~~~~~ 156 (648) .|..|-+..+....|+..... |..+|++.+.|+. T Consensus 6 yae~~vr~~~~kg~G~~rI~qeL~qKGi~~~~Ie~ 40 (47) T 3c1d_A 6 FVARFIASRSRKGYGPARIRQELNQKGISREATEK 40 (47) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTCCHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHH T ss_conf 99999998750798789999999998088999999 No 176 >>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} (A:127-203) Probab=23.11 E-value=31 Score=11.96 Aligned_cols=18 Identities=17% Similarity=0.495 Sum_probs=14.6 Q ss_pred EEEEEEECCCCEEEEECC Q ss_conf 688897077858885010 Q gi|254780834|r 206 LIFPIRSSRGQVIAFGGR 223 (648) Q Consensus 206 i~fPi~~~~g~~i~f~gR 223 (648) -.|||-|..|+++|+--+ T Consensus 32 ~~~pVvd~~g~lvGivt~ 49 (77) T 2yzq_A 32 MALPVVDSEGNLVGIVDE 49 (77) T ss_dssp SEEEEECTTSCEEEEEEG T ss_pred CCCCCCCCCCEEEEEEEH T ss_conf 221134677438999889 No 177 >>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomics, protein structure initiative; 2.35A {Lactobacillus reuteri 100-23} (A:108-152) Probab=23.09 E-value=31 Score=11.96 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=23.6 Q ss_pred HHHHHHHHHHHC-CCCCHHHHHH-HHHCCCCHHHHCC Q ss_conf 999999999732-6777578999-9850688535101 Q gi|254780834|r 122 EVATDFFHHSLK-NARDKRLHYY-LDERGIDSHAIEM 156 (648) Q Consensus 122 ~~~~~~~~~~l~-~~~~~~a~~y-l~~Rg~~~~~~~~ 156 (648) ..|..|-..... +..|+..... |..+|++.++|.. T Consensus 5 ~fA~~~v~~r~~~~~~Gp~~I~qeL~qKGI~~~iIe~ 41 (45) T 3d5l_A 5 AYAASYVRTMINTDLKGPGIIRQHLRQKGIGESDIDD 41 (45) T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHTTCCHHHHHH T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHH T ss_conf 9999999986012660599999999986999999999 No 178 >>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis H37RV} (A:1-128) Probab=23.02 E-value=31 Score=11.95 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=27.1 Q ss_pred HCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 12681899617886622577788888877753697306752578 Q gi|254780834|r 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 (648) Q Consensus 312 r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~ 355 (648) ...++|+++.|+.+.-++|...|+.++.+. +..+-+...+. T Consensus 15 ~~~~~ILvavD~S~~s~~al~~a~~la~~~---~~~~~l~~v~~ 55 (128) T 1tq8_A 15 SAYKTVVVGTDGSDSSXRAVDRAAQIAGAD---AKLIIASAYLP 55 (128) T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHTTT---SEEEEEEECCC T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHCC---CCEEEEEEEEC T ss_conf 589969999899989999999999998548---98799999961 No 179 >>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} (A:261-452) Probab=22.98 E-value=11 Score=16.19 Aligned_cols=76 Identities=13% Similarity=0.056 Sum_probs=44.2 Q ss_pred HHHHH---HCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCE Q ss_conf 99998---506885351012442256774103455420599734523201210034654100001671688897077858 Q gi|254780834|r 141 HYYLD---ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV 217 (648) Q Consensus 141 ~~yl~---~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~ 217 (648) .+||. .+.++...+.++-++-| .+ ..||.++|+=--+|.-+.++...+......|....+++.+..+..+.. T Consensus 6 ~~~l~~~~~~~l~~~~~~~i~~qia----~g-L~yLHs~~iiHrDlKp~NILl~~~~~~~i~Dfg~~~~~~~~~~~~~~~ 80 (192) T 1fmk_A 6 LDFLKGETGKYLRLPQLVDMAAQIA----SG-MAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQG 80 (192) T ss_dssp HHHHSHHHHTTCCHHHHHHHHHHHH----HH-HHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC------------ T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHH----HH-HHHHHHCCCCCCCCCCCEEEECCCCCEEEECCCHHEECCCCCCEEECC T ss_conf 9998644588899999999999999----99-999986898678745221899799977980241012236887302101 Q ss_pred EEEE Q ss_conf 8850 Q gi|254780834|r 218 IAFG 221 (648) Q Consensus 218 i~f~ 221 (648) ...+ T Consensus 81 ~~~~ 84 (192) T 1fmk_A 81 AKFP 84 (192) T ss_dssp --CC T ss_pred CCCC T ss_conf 4777 No 180 >>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} (A:157-289) Probab=22.78 E-value=32 Score=11.91 Aligned_cols=72 Identities=15% Similarity=0.037 Sum_probs=42.5 Q ss_pred HHHHHCCCCCCHH-HHH--CCCCHHHHHHHHHCCC--EEEEEECCCCCCHH--HHHHHHHHHHHHH-HCCCCEEEEECCC Q ss_conf 9987435542113-432--1366267898851268--18996178866225--7778888887775-3697306752578 Q gi|254780834|r 284 LSLCQAGVQNVVS-SLG--TALTEYQLRLLWKLSP--RIVLCFDGDDPGLR--AAYKAIDLVLCHL-IPGNRVNFVLLSR 355 (648) Q Consensus 284 i~l~~~G~~n~va-~~G--talt~~~~~~l~r~~~--~vvl~fDgD~AG~k--Aa~Ra~e~~l~~l-~~g~~v~vv~LP~ 355 (648) .-....|+++++= +-| ---|..|+-.+-||+. .|+++...|...-+ +.....+.+.... ..|...+|+.||. T Consensus 37 ~l~~~LG~~~viWl~~~~~~D~TdgHiD~~arF~~~~~il~~~~~d~~d~~~~~~~~~~~~L~~~~da~G~~~~i~~lP~ 116 (133) T 2jer_A 37 KLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCC 116 (133) T ss_dssp HHHHHHTCSEEEEECCCSCTTTTSSCGGGTEEEEETTEEEEECCCCTTSTTHHHHHHHHHHHHTCBCTTCCBCEEEEECC T ss_pred HHHHHHCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCC T ss_conf 99886498079986587667667777544479947995699833898883578999999999765653489865897158 No 181 >>2k4q_A Major tail protein V; GPV, bacteriophage lambda, viral protein; NMR {Enterobacteria phage lambda} (A:) Probab=22.69 E-value=32 Score=11.90 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=23.7 Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 189961788662257778888887775369730675257888 Q gi|254780834|r 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 (648) Q Consensus 316 ~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~ 357 (648) .+.+.||.+.||+.|..-+.+- ..-..+| +.+|+|. T Consensus 84 s~~~~~d~~~~~~~aL~~a~~s-----~~~~~~k-i~~pdg~ 119 (156) T 2k4q_A 84 SFTLAWMPGEQGQQALLAWFNE-----GDTRAYK-IRFPNGT 119 (156) T ss_dssp EEEEEECTTCCCHHHHHHHHHH-----TCCEEEE-EECTTSC T ss_pred EEEEEECCCCHHHHHHHHHHHC-----CCEEEEE-EECCCCC T ss_conf 9998748885789999999868-----9969999-9868998 No 182 >>1yzy_A Hypothetical protein HI1011; putative tRNA synthase, structural genomics, PSI, protein structure initiative; 2.10A {Haemophilus influenzae} (A:) Probab=22.64 E-value=32 Score=11.89 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=11.0 Q ss_pred EEEEEEECCCCEEEEE Q ss_conf 6888970778588850 Q gi|254780834|r 206 LIFPIRSSRGQVIAFG 221 (648) Q Consensus 206 i~fPi~~~~g~~i~f~ 221 (648) ++.|-+=..||++-+| T Consensus 110 ~v~PAfP~~GR~t~~G 125 (413) T 1yzy_A 110 VITPALPVNGRTIFNG 125 (413) T ss_dssp EECCCBGGGTEEEETT T ss_pred EEECCCCCCCCEEECC T ss_conf 9965656788389877 No 183 >>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} (A:1-89,A:257-335) Probab=22.46 E-value=32 Score=11.86 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=24.3 Q ss_pred HCCCCCHHHHHHHHHCCCCHHHHCCC--CCCCCCCC Q ss_conf 32677757899998506885351012--44225677 Q gi|254780834|r 132 LKNARDKRLHYYLDERGIDSHAIEMF--KLGYAPDS 165 (648) Q Consensus 132 l~~~~~~~a~~yl~~Rg~~~~~~~~f--~lG~ap~~ 165 (648) |....|.....++++.|+-++.+-.| .||+++.+ T Consensus 91 LSKR~g~~si~~~re~G~~PeAl~nyLa~LG~s~~~ 126 (168) T 2ja2_A 91 LSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSIAD 126 (168) T ss_dssp CCTTSGGGBHHHHHHHTCCHHHHHHHHHTSSCCSCS T ss_pred CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCC T ss_conf 344578623677997598889999999985778788 No 184 >>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural proteomics in europe, spine, structural genomics, ligand transport; NMR {Staphylococcus aureus} (A:) Probab=22.36 E-value=32 Score=11.85 Aligned_cols=62 Identities=16% Similarity=0.279 Sum_probs=42.7 Q ss_pred HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHH Q ss_conf 789885126818996178866225777888888777536973067525788888899720366889988641 Q gi|254780834|r 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377 (648) Q Consensus 306 ~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~ 377 (648) =++...+|...|.+-+||-.+--+-.+..+-+ -+..|-.+.+.. +|.|-++.+ +++.+++++ T Consensus 22 lv~~a~~~~~~I~i~~~~~~~~akSil~ll~L---~~~~G~~i~i~~--~G~De~~Al-----~~l~~~l~~ 83 (88) T 1ka5_A 22 LVQTASKFDSDIQLEYNGKKVNLKSIMGVMSL---GVGKDAEITIYA--DGSDESDAI-----QAISDVLSK 83 (88) T ss_dssp HHHHHHHHSSEEEEEETTEEEETTCHHHHHTT---TCCTTCEEEEEE--ESSSHHHHH-----HHHHHHHHH T ss_pred HHHHHHHCCCEEEEEECCEEEECHHHHHHHHC---CCCCCCEEEEEE--ECCCHHHHH-----HHHHHHHHH T ss_conf 99999758998999989999852829999855---999989999999--786899999-----999999986 No 185 >>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, structural genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV} (A:1-24,A:113-251) Probab=22.14 E-value=33 Score=11.81 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=32.3 Q ss_pred EEECCHHHHHHHHHCCCCCCHHHHHCCC-CHHHHHH--HHHCCCEEEEEECCCCCCHHHHHHHH Q ss_conf 9971438899987435542113432136-6267898--85126818996178866225777888 Q gi|254780834|r 275 ILVEGYMDVLSLCQAGVQNVVSSLGTAL-TEYQLRL--LWKLSPRIVLCFDGDDPGLRAAYKAI 335 (648) Q Consensus 275 i~vEGy~Dvi~l~~~G~~n~va~~Gtal-t~~~~~~--l~r~~~~vvl~fDgD~AG~kAa~Ra~ 335 (648) ++..|-.+++..-..|++-+|.|.|+.- -+.-++. |..|.+.|+.+...|.+-...+++.+ T Consensus 24 ~l~pgv~e~L~~Lk~~~~l~IvSn~~~~~~~~~l~~~gl~~~Fd~i~~~~KP~p~~~~~~l~~l 87 (163) T 2pke_A 24 LVIAGVREAVAAIAADYAVVLITKGDLFHQEQKIEQSGLSDLFPRIEVVSEKDPQTYARVLSEF 87 (163) T ss_dssp TBCTTHHHHHHHHHTTSEEEEEEESCHHHHHHHHHHHSGGGTCCCEEEESCCSHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 6785699986332110220014578678788888875311211211002577548999988760 No 186 >>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} (A:1-99,A:163-229,A:321-382) Probab=22.10 E-value=25 Score=12.86 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=6.8 Q ss_pred HHHHCCCCHHHHCCCCC Q ss_conf 99850688535101244 Q gi|254780834|r 143 YLDERGIDSHAIEMFKL 159 (648) Q Consensus 143 yl~~Rg~~~~~~~~f~l 159 (648) +|.++|++--++++-.. T Consensus 35 ~La~~G~~V~iiE~~~~ 51 (228) T 1ryi_A 35 YLAKENKNTALFESGTM 51 (228) T ss_dssp HHHHTTCCEEEECSSST T ss_pred HHHHCCCCEEEEECCCC T ss_conf 99988995899959999 No 187 >>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* (A:) Probab=22.07 E-value=33 Score=11.80 Aligned_cols=78 Identities=9% Similarity=0.095 Sum_probs=53.0 Q ss_pred HHHCCCCCCHHHHHCCCCHHHHHHHHHC-CCEEEEEECCCCCCHHHHHH------HHHHHHHHHHCCCC--EEEEECCC- Q ss_conf 8743554211343213662678988512-68189961788662257778------88888777536973--06752578- Q gi|254780834|r 286 LCQAGVQNVVSSLGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYK------AIDLVLCHLIPGNR--VNFVLLSR- 355 (648) Q Consensus 286 l~~~G~~n~va~~Gtalt~~~~~~l~r~-~~~vvl~fDgD~AG~kAa~R------a~e~~l~~l~~g~~--v~vv~LP~- 355 (648) +...|+...+-+.|+.++.+.+..+... ...+.+.+|+...-.....+ .++.+..+...|.. +..+.+|. T Consensus 94 ~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~ 173 (245) T 3c8f_A 94 CKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGW 173 (245) T ss_dssp HHTTTCCEEEEECCCCCCCCHHHHHHHHTCSEEEEECCCSSHHHHHHHHSSCSHHHHHHHHHHHHHTCCEEEEEEECTTT T ss_pred HHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC T ss_conf 88635714661377311445556542133210114500100678887627332666766545422555137766323898 Q ss_pred CCCHHHHH Q ss_conf 88888997 Q gi|254780834|r 356 GEDPDSFI 363 (648) Q Consensus 356 G~DPDe~i 363 (648) +.+++++. T Consensus 174 ~~~~~~~~ 181 (245) T 3c8f_A 174 SDDDDSAH 181 (245) T ss_dssp TCCHHHHH T ss_pred CCCHHHHH T ss_conf 89999999 No 188 >>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HUPR1; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B (A:) Probab=21.98 E-value=33 Score=11.79 Aligned_cols=99 Identities=13% Similarity=0.203 Sum_probs=52.4 Q ss_pred EEEEECCHHHHHHHH----HCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCE Q ss_conf 089971438899987----4355421134321366267898851268189961788662257778888887775369730 Q gi|254780834|r 273 FIILVEGYMDVLSLC----QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 (648) Q Consensus 273 ~~i~vEGy~Dvi~l~----~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v 348 (648) .++|||.-.+...+. ..|+.-.+|..| .+-+..+.+....++++ |-.=.|.. +++++-.+.+.+..+ T Consensus 3 ~ILiVDD~~~~~~~l~~~l~~g~~v~~a~~~----~~al~~l~~~~~dlill-D~~lP~~~----G~ell~~lr~~~~~~ 73 (139) T 2jk1_A 3 AILLVDDEPHSLAAMKLALEDDFDVLTAQGA----EAAIAILEEEWVQVIIC-DQRMPGRT----GVDFLTEVRERWPET 73 (139) T ss_dssp EEEEECSSHHHHHHHHHHHTTTSCEEEESSH----HHHHHHHHHSCEEEEEE-ESCCSSSC----HHHHHHHHHHHCTTS T ss_pred EEEEEECCHHHHHHHHHHHHCCCEEEEECCH----HHHHHHHHHCCCCEEEE-ECCCCCCC----HHHHHHHHHHCCCCC T ss_conf 8999969899999999999879999996549----99999998378988996-34454243----899999999718999 Q ss_pred EEEECCCCCCHHHHHHCCCHHHHHHHHHHCCC Q ss_conf 67525788888899720366889988641499 Q gi|254780834|r 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380 (648) Q Consensus 349 ~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~ 380 (648) .|+.+....|.++.++.-..-+...++.+... T Consensus 74 pvI~lt~~~~~~~~~~~~~~~Ga~dyl~KP~~ 105 (139) T 2jk1_A 74 VRIIITGYTDSASMMAAINDAGIHQFLTKPWH 105 (139) T ss_dssp EEEEEESCTTCHHHHHHHHHTTCCEEEESSCC T ss_pred CEEEEECCCCHHHHHHHHHHCCCCEEEECCCC T ss_conf 68989897998999999997599718869899 No 189 >>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} (A:133-268) Probab=21.97 E-value=33 Score=11.79 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=44.6 Q ss_pred CEEEECCCCCCC-CHHHHHHHHCCCCHHHHHHHHHHHHCCCC------CCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHH Q ss_conf 746713688887-89899898859997999999999818858------7768203677788999-999999999999997 Q gi|254780834|r 60 GFYYCFSCHVKG-DHLSFLSALLGCSFIESVQRLAAIAGVPL------PVVDPKIEKKEKIQTD-LIRLIEVATDFFHHS 131 (648) Q Consensus 60 ~~~~cf~c~~~g-d~~~f~~~~~~~~f~ea~~~la~~~gi~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 131 (648) |+|-=+|+|.++ +.|.=+-|.+ |..||...||+- |..+-...+.++..-. =|+.++.....+... T Consensus 9 Gy~Tk~GD~~~d~~pi~~L~Kt~-------V~~Lar~l~vP~~ii~k~PSaeL~~~qtDE~~lg~~Y~~lD~~l~~~~~~ 81 (136) T 1xng_A 9 GYGTLFGDLACAINPIGELFKTE-------VYELARRLNIPKKILNKPPSADLFVGQSDEKDLGYPYSVIDPLLKDIEAL 81 (136) T ss_dssp TCSCTTTTTCCSEETTTTSCHHH-------HHHHHHHTTCCHHHHTSCCCCCSSTTCCHHHHHSSCHHHHHHHHHHHHHH T ss_pred CCCCCHHHHCCCCCCCCCCCHHH-------HHHHHHHHCCCHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHH T ss_conf 65512544234300123768999-------99999981984887127999651236787665158889999999987752 Q ss_pred HCCCCCHHHHHHHHHCCCCHHHHCCCC Q ss_conf 326777578999985068853510124 Q gi|254780834|r 132 LKNARDKRLHYYLDERGIDSHAIEMFK 158 (648) Q Consensus 132 l~~~~~~~a~~yl~~Rg~~~~~~~~f~ 158 (648) ...+. ...+.|..-|++.+.++++. T Consensus 82 ~~~~~--~~~~~l~~~~~~~~~v~~i~ 106 (136) T 1xng_A 82 FQTKP--IDTETLAQLGYDEILVKNIT 106 (136) T ss_dssp SSSSC--CCHHHHHHTTCCHHHHHHHH T ss_pred CCCCC--CCHHHHHHCCCCHHHHHHHH T ss_conf 12245--89999988499999999999 No 190 >>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural genomics, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:1-14,A:100-235) Probab=21.87 E-value=33 Score=11.77 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=18.2 Q ss_pred CEEEEEC-CH-HHHHHHHHCCCCCC-HHHHHC Q ss_conf 7089971-43-88999874355421-134321 Q gi|254780834|r 272 SFIILVE-GY-MDVLSLCQAGVQNV-VSSLGT 300 (648) Q Consensus 272 ~~~i~vE-Gy-~Dvi~l~~~G~~n~-va~~Gt 300 (648) +.++.|. .+ -|+.+...+|+..+ |..-|. T Consensus 91 ~~~i~VGD~~~~Di~~A~~aG~~ti~v~~~~~ 122 (150) T 2om6_A 91 EESLHIGDTYAEDYQGARKVGXWAVWINQEGD 122 (150) T ss_dssp GGEEEEESCTTTTHHHHHHTTSEEEEECTTCC T ss_pred CCCEEECCCCHHHHHHHHHCCCEEEEECCCCC T ss_conf 22404436728669999986998999889998 No 191 >>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* (A:406-496,A:551-689) Probab=21.77 E-value=33 Score=11.75 Aligned_cols=28 Identities=4% Similarity=0.084 Sum_probs=15.8 Q ss_pred CCHHHHCCCCCCCCCCCCCHHHHHHHCC Q ss_conf 8853510124422567741034554205 Q gi|254780834|r 149 IDSHAIEMFKLGYAPDSRYSLREHLRQK 176 (648) Q Consensus 149 ~~~~~~~~f~lG~ap~~~~~l~~~l~~~ 176 (648) ++++-+-.+.|-|+.+.++..++|+.++ T Consensus 93 lnpeRmPDIDiDf~~~~R~eVi~Yi~~k 120 (230) T 3f2b_A 93 FKGDKVPDIDLNFSGEYQPRAHNYTKVL 120 (230) T ss_dssp TTSCSCCCEEEEEETTTHHHHHHHHHHH T ss_pred CCCCCCCHHHCCCCHHHHHHHHHHHHHH T ss_conf 3313345322025247789999988876 No 192 >>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} (A:) Probab=21.63 E-value=33 Score=11.73 Aligned_cols=38 Identities=16% Similarity=0.068 Sum_probs=17.7 Q ss_pred ECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCC Q ss_conf 71438899987435542113432136626789885126 Q gi|254780834|r 277 VEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLS 314 (648) Q Consensus 277 vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~ 314 (648) +++-.-.-.+...++...++.+-.-.+.+++.++.++. T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~e~l~~~a~~~ 73 (337) T 1ps1_A 36 IRSDAAAERHLRGGYADLASRFYPHATGADLDLGVDLM 73 (337) T ss_dssp CCSHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 89879999986059999999977899999999999999 No 193 >>1a1t_A Nucleocapsid protein; stem-loop RNA; NMR {Human immunodeficiency virus 1} (A:) Probab=21.45 E-value=31 Score=12.02 Aligned_cols=11 Identities=36% Similarity=0.914 Sum_probs=5.4 Q ss_pred EEEECCCCCCC Q ss_conf 46713688887 Q gi|254780834|r 61 FYYCFSCHVKG 71 (648) Q Consensus 61 ~~~cf~c~~~g 71 (648) .-+||-||..| T Consensus 12 ~ikCfNCGk~G 22 (55) T 1a1t_A 12 TVKCFNCGKEG 22 (55) T ss_dssp TCBCTTTCCBS T ss_pred CCEEECCCCCC T ss_conf 61063578745 No 194 >>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A (A:) Probab=21.39 E-value=34 Score=11.69 Aligned_cols=46 Identities=7% Similarity=-0.072 Sum_probs=32.1 Q ss_pred EECCCCEE-EECC-CCCCCCH-HHHHHHHCCCCHHHHHHHHHHHH-CCCC Q ss_conf 81789746-7136-8888789-89989885999799999999981-8858 Q gi|254780834|r 55 CNDSKGFY-YCFS-CHVKGDH-LSFLSALLGCSFIESVQRLAAIA-GVPL 100 (648) Q Consensus 55 v~~~~~~~-~cf~-c~~~gd~-~~f~~~~~~~~f~ea~~~la~~~-gi~~ 100 (648) ..+.+..+ ||-. =|.+|-+ .-++|...++++.||++.+..+- ++.+ T Consensus 78 ~~~~~~VlVHC~~G~~RS~~~~~~yL~~~~~~~~~~A~~~v~~~R~~~~~ 127 (144) T 3ezz_A 78 KDCRGRVLVHSQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRRSIISP 127 (144) T ss_dssp HHTTCCEEEEESSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHTTCTTCCC T ss_pred HHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC T ss_conf 62472278884012551799999999998399999999999998996689 No 195 >>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of NADP, oxidoreductase; HET: NAP; 2.00A {Homo sapiens} (A:) Probab=21.28 E-value=34 Score=11.67 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=8.3 Q ss_pred HHHHHHHCCCCEEEEECC Q ss_conf 887775369730675257 Q gi|254780834|r 337 LVLCHLIPGNRVNFVLLS 354 (648) Q Consensus 337 ~~l~~l~~g~~v~vv~LP 354 (648) ++-.+...|.+|+|+.=| T Consensus 68 l~~~L~~~G~~V~faIHP 85 (207) T 1djl_A 68 LVKMLTEQGKKVRFGIHP 85 (207) T ss_dssp HHHHHHHTTCEEEEEECT T ss_pred HHHHHHHCCCEEEEEECC T ss_conf 999999779837898420 No 196 >>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A (A:1-148,A:302-364) Probab=21.20 E-value=34 Score=11.66 Aligned_cols=38 Identities=5% Similarity=0.033 Sum_probs=21.6 Q ss_pred CEEEEE-ECCCCCCHHHHHHHH-HHHHHHHHCCCCE-EEEECCC Q ss_conf 818996-178866225777888-8887775369730-6752578 Q gi|254780834|r 315 PRIVLC-FDGDDPGLRAAYKAI-DLVLCHLIPGNRV-NFVLLSR 355 (648) Q Consensus 315 ~~vvl~-fDgD~AG~kAa~Ra~-e~~l~~l~~g~~v-~vv~LP~ 355 (648) .+|.++ --||.||.||+++++ +.++ ..+.++ +|.-..+ T Consensus 4 kni~I~~sGG~tpgiNasi~gvv~~a~---~~~~~v~~iyG~~~ 44 (211) T 3hno_A 4 KNAFYAQSGGVTAVINASAAGVIEAAR---KQSGKIGRIYAGRN 44 (211) T ss_dssp CEEEEEECSSCCSSHHHHHHHHHHHHH---HHCSSCCCEEEETT T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHH---HCCCCEEEEEEECC T ss_conf 648998888825889799999999999---83994879976735 No 197 >>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} (A:) Probab=20.93 E-value=34 Score=11.62 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=19.5 Q ss_pred EEEEECCCCCCHHHHHHCCCHHHHHHH Q ss_conf 067525788888899720366889988 Q gi|254780834|r 348 VNFVLLSRGEDPDSFIRCYGKTAFEKL 374 (648) Q Consensus 348 v~vv~LP~G~DPDe~ir~~G~eaf~~l 374 (648) -.+|.+|+|.|-+||+-.+-.+-|..+ T Consensus 11 ~~~v~lP~g~d~neWlA~~~~~ff~~i 37 (185) T 1pi1_A 11 RQAVMLPEGEDLNEWIAVNTVDFFNQI 37 (185) T ss_dssp HHHTSCCTTCCHHHHHHHHHHHHHHHH T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 999449199871220999999999999 No 198 >>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5} (A:105-205) Probab=20.88 E-value=2.3 Score=22.39 Aligned_cols=29 Identities=24% Similarity=0.532 Sum_probs=18.9 Q ss_pred CCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCC Q ss_conf 88888754122210158877777557534588885878 Q gi|254780834|r 15 IPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPS 52 (648) Q Consensus 15 ~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektps 52 (648) +.||.+=|+...++|.|- + |||..+|-+. T Consensus 4 VRI~~~~g~ilA~TRgG~-------I--CPfTT~rv~~ 32 (101) T 2vug_A 4 VRVVMYKGKMLGITRGGF-------I--CPFTTERIPD 32 (101) T ss_dssp EEEEEETTEEEEEETTSC-------B--CHHHHHHGGG T ss_pred EEEEEECCEEEEEECCCC-------C--CCCCHHHHHH T ss_conf 999998999999948984-------5--7760566899 No 199 >>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii OT3} (B:1-81,B:145-215,B:313-382) Probab=20.86 E-value=33 Score=11.79 Aligned_cols=15 Identities=33% Similarity=0.341 Sum_probs=6.5 Q ss_pred HHHHCCCCHHHHCCC Q ss_conf 998506885351012 Q gi|254780834|r 143 YLDERGIDSHAIEMF 157 (648) Q Consensus 143 yl~~Rg~~~~~~~~f 157 (648) +|.+||++--++++- T Consensus 23 ~La~~G~~v~ilE~~ 37 (222) T 1y56_B 23 ELAKRGEEVTVIEKR 37 (222) T ss_dssp HHHHTTCCEEEECSS T ss_pred HHHHCCCCEEEECCC T ss_conf 999889939998699 No 200 >>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A (A:204-278) Probab=20.61 E-value=35 Score=11.57 Aligned_cols=17 Identities=12% Similarity=0.452 Sum_probs=13.5 Q ss_pred EEEEEECCCCEEEEECC Q ss_conf 88897077858885010 Q gi|254780834|r 207 IFPIRSSRGQVIAFGGR 223 (648) Q Consensus 207 ~fPi~~~~g~~i~f~gR 223 (648) -+|+-|..|+++|+=-+ T Consensus 29 ~lpVvD~~g~lvGiit~ 45 (75) T 2yvy_A 29 VLPVVDEEGRLVGIVTV 45 (75) T ss_dssp EEEEECTTSBEEEEEEH T ss_pred EEEEECCCCEEEEEEEH T ss_conf 89898689969999789 No 201 >>1bjt_A Topoisomerase II; quaternary change, DNA-binding, DNA topology; 2.50A {Saccharomyces cerevisiae} (A:1-153,A:197-245) Probab=20.53 E-value=35 Score=11.55 Aligned_cols=85 Identities=13% Similarity=0.058 Sum_probs=45.9 Q ss_pred CHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH-----HHHHHCCCCEEEEECCCCCCHHHHHHCCCH Q ss_conf 113432136626789885126818996178866225777888888-----777536973067525788888899720366 Q gi|254780834|r 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLV-----LCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368 (648) Q Consensus 294 ~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~-----l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~ 368 (648) -+..+|+.+.......-..--.+|+||-|.|.-|.. .|++-+. .|-|-..-.|+++..|=|.--+-..+++ T Consensus 90 l~~aLG~~~~~~~~d~~~lRY~kIiImTDADvDGsH--Ir~LLltfF~r~~p~Li~~G~vyia~pP~gt~~~~~~~~y-- 165 (202) T 1bjt_A 90 IKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSH--IKGLIINFLESSFLGLLDIQGFLLEFITLGTSLAQEVREY-- 165 (202) T ss_dssp HHHHHTCCSSBCCSCSSSSSCSEEEEEEC-----CC--HHHHHHHHHHHHBTTTTTSTTSEEECCCCSTTHHHHHHHH-- T ss_pred HHHHHCCCCCCCCCCCHHCCCCCEEEEECCCCCCHH--HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH-- T ss_conf 999978898988786001676847999889888426--9999999999972897355884999848544560345777-- Q ss_pred HHHHHHHHHCCCHHHHHHH Q ss_conf 8899886414992799999 Q gi|254780834|r 369 TAFEKLIVESLPLVDMLWK 387 (648) Q Consensus 369 eaf~~ll~~A~~l~dFl~~ 387 (648) |.++=... +.|.|. T Consensus 166 --~~~~~~h~---~~f~~~ 179 (202) T 1bjt_A 166 --FSNLDRHL---KIFHSL 179 (202) T ss_dssp --HHHHHHHH---HHHHHC T ss_pred --HCCCCCCC---CEEEEC T ss_conf --53600002---102312 No 202 >>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} (A:1-196) Probab=20.52 E-value=31 Score=12.07 Aligned_cols=71 Identities=10% Similarity=-0.047 Sum_probs=41.0 Q ss_pred HHHHHCCCCHHHHHHHHHHHHCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHCC Q ss_conf 9898859997999999999818858776---8203677788999999999999999997----32677757899998506 Q gi|254780834|r 76 FLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIRLIEVATDFFHHS----LKNARDKRLHYYLDERG 148 (648) Q Consensus 76 f~~~~~~~~f~ea~~~la~~~gi~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~a~~yl~~Rg 148 (648) .++..++.++.+....++...|.+-+-. .+...+. +.+--.....++... -.+..|-+|...|.++| T Consensus 30 ~l~~~~~~~~~~~~~~i~~~~~~~g~vsvev~~~d~~~------~i~~A~~l~~~~~ni~IKIP~T~~Gi~Ai~~L~~~G 103 (196) T 1l6w_A 30 SIIAAGKKPLDVVLPQLHEAMGGQGRLFAQVMATTAEG------MVNDALKLRSIIADIVVKVPVTAEGLAAIKMLKAEG 103 (196) T ss_dssp HHHHHHCSCHHHHHHHHHHHTTTCSEEEEECCCSSHHH------HHHHHHHHHHHSTTCEEEEECSHHHHHHHHHHHHHT T ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHH------HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCC T ss_conf 99986699999999999998098996899997376777------899999999728675899506275789999988739 Q ss_pred CCHH Q ss_conf 8853 Q gi|254780834|r 149 IDSH 152 (648) Q Consensus 149 ~~~~ 152 (648) ++-. T Consensus 104 I~vn 107 (196) T 1l6w_A 104 IPTL 107 (196) T ss_dssp CCEE T ss_pred CCEE T ss_conf 3288 No 203 >>1vcp_A Semliki forest virus capsid protein; virus coat protein, polyprotein, transmembrane, glycoprotein, nucleocapsid protein, viral protein; 3.00A {Semliki forest virus} (A:1-63) Probab=20.51 E-value=35 Score=11.55 Aligned_cols=21 Identities=24% Similarity=0.718 Sum_probs=16.0 Q ss_pred EEEEEECCCCEEEE----ECCCCCCC Q ss_conf 88897077858885----01001465 Q gi|254780834|r 207 IFPIRSSRGQVIAF----GGRTLSKG 228 (648) Q Consensus 207 ~fPi~~~~g~~i~f----~gR~l~~~ 228 (648) +|||.. .|+|.|+ |||++.+- T Consensus 2 ~F~v~~-dG~v~GyAc~vg~kv~kP~ 26 (63) T 1vcp_A 2 IFEVKH-EGKVTGYACLVGDKVMKPA 26 (63) T ss_dssp EEEEEE-TTEEEEEEECBTTEEBCBT T ss_pred EEEEEE-CCEEEEEEEEECCEEECCC T ss_conf 103655-6725688999757630231 No 204 >>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} (A:200-366) Probab=20.42 E-value=24 Score=13.09 Aligned_cols=14 Identities=0% Similarity=0.176 Sum_probs=5.5 Q ss_pred CCCCHHHHHHHHHH Q ss_conf 37998899999999 Q gi|254780834|r 509 RYDNNELQKLWSFL 522 (648) Q Consensus 509 ~f~~~~~~~L~~~i 522 (648) ....|-+..+++.+ T Consensus 117 ~i~~Pl~~~vy~Il 130 (167) T 1evy_A 117 KVKMPLCHQIYEIV 130 (167) T ss_dssp TCCCHHHHHHHHHH T ss_pred CCCCHHHHHHHHHH T ss_conf 99984999999999 No 205 >>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* (A:1-348) Probab=20.28 E-value=35 Score=11.51 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=21.6 Q ss_pred CCCCCHHHHHHCCCHHHHHHHHHHCC Q ss_conf 78888889972036688998864149 Q gi|254780834|r 354 SRGEDPDSFIRCYGKTAFEKLIVESL 379 (648) Q Consensus 354 P~G~DPDe~ir~~G~eaf~~ll~~A~ 379 (648) -.+.||++++.++|+|.++-++-... T Consensus 301 gn~v~~~~~~~~yg~D~~R~~~~~~~ 326 (348) T 2csx_A 301 GNVVDPYEVVQEYGLDEVRYFLLREV 326 (348) T ss_dssp TCCCCHHHHHHHHCHHHHHHHHHHSS T ss_pred CCCCCHHHHHHHCCCCHHHHHHHHCC T ss_conf 86569899998829779999776417 No 206 >>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloidosis--finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} (A:) Probab=20.21 E-value=35 Score=11.50 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=34.3 Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC--CEEEEECCCCCCHHHHHHCCCHH Q ss_conf 81899617886622577788888877753697--30675257888888997203668 Q gi|254780834|r 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN--RVNFVLLSRGEDPDSFIRCYGKT 369 (648) Q Consensus 315 ~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~--~v~vv~LP~G~DPDe~ir~~G~e 369 (648) ...++..=|-.+=..--..|.+++..+..... ...+..+.+|+.|++|.+..|.. T Consensus 37 ~~~ifvW~G~~s~~~ek~~A~~~a~~~~~~~~~~~~~i~~v~eg~E~~~F~~~~gg~ 93 (104) T 1kcq_A 37 GNNIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHVSEEGTEPEAMLQVLGPK 93 (104) T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHHHHHHTSTTCSEEEEEETTCCCHHHHHHHCSC T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCC T ss_conf 998999989979999999999999999862779997399987899949999983998 No 207 >>3eat_X Pyoverdine biosynthesis protein PVCB; paerucumarin, Fe/alpha-ketoglutarate dependent hydroxylase, 2-isocyano-6,7-dihydroxycoumarin; 2.50A {Pseudomonas aeruginosa} (X:1-145,X:239-293) Probab=20.17 E-value=23 Score=13.20 Aligned_cols=13 Identities=15% Similarity=0.053 Sum_probs=5.0 Q ss_pred HHHHHHHHHHCCC Q ss_conf 9999999981885 Q gi|254780834|r 87 ESVQRLAAIAGVP 99 (648) Q Consensus 87 ea~~~la~~~gi~ 99 (648) ++++.+-.++|+- T Consensus 46 ~~l~~~l~~~Gvv 58 (200) T 3eat_X 46 QWLKGLARSHHLL 58 (200) T ss_dssp HHHHHHHHHHSEE T ss_pred HHHHHHHHHCCEE T ss_conf 9999999875999 Done!