HHsearch results for GI: 254780834 and protein with PDBid: 1d0q_A
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=99.91 E-value=7.5e-24 Score=236.96 Aligned_cols=98 Identities=40% Similarity=0.785 Sum_probs=94.9
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHC
Q ss_conf 87888999998748888875412221015887777755753458888587879817897467136888878989989885
Q gi|254780834|r 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81 (648)
Q Consensus 2 ~i~~~~i~~i~~~~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd~~~f~~~~~ 81 (648)
|||++.|++||+++||++|+++|++|+++|++ |+++||||+|+||||+|+++++.||||+||+|||+|+|||+++
T Consensus 4 ri~~~~i~~ik~~~~i~d~l~~~~~lk~~G~~-----~~~~CPfh~d~~~S~~v~~~~~~~~Cf~Cg~~Gd~i~~v~~~~ 78 (103)
T 1d0q_A 4 RIPEETIEAIRRGVDIVDVIGEYVQLKRQGRN-----YFGLCPFHGEKTPSFSVSPEKQIFHCFGCGAGGNAFTFLMDIE 78 (103)
T ss_dssp TSCHHHHHHHHHHCCHHHHHTTTSCCEEETTE-----EEECCSSSCCSSCCEEEETTTTEEEETTTCCEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCHHHHHHCCCCEEECCCC-----EEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 78999999999859999999637775877983-----5888988899999879973887799888799988999999995
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99979999999998188587768
Q gi|254780834|r 82 GCSFIESVQRLAAIAGVPLPVVD 104 (648)
Q Consensus 82 ~~~f~ea~~~la~~~gi~~~~~~ 104 (648)
|++|.||+++||+++||++|..+
T Consensus 79 ~~sf~eA~~~La~~~gi~~~~~~ 101 (103)
T 1d0q_A 79 GIPFVEAAKRLAAKAGVDLSVYE 101 (103)
T ss_dssp TCCHHHHHHHHHHHHTCCCGGGC
T ss_pred CCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 97999999999999599877657