HHsearch results for GI: 254780834 and protein with PDBid: 1dd9_A
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=100.00 E-value=0 Score=677.60 Aligned_cols=320 Identities=35% Similarity=0.650 Sum_probs=304.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHC
Q ss_conf 67778899999999999999999732677757899998506885351012442256774103455420599734523201
Q gi|254780834|r 108 EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 (648)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~g 187 (648)
.....+|..|+++++.|+.|||.+|+++.++.|++||++||+++++|++|+|||||++|+.|+++|.++||+.+.+.++|
T Consensus 12 ~~~~~~r~~l~~i~~~a~~~y~~~L~~~~~~~a~~YL~~Rgl~~~~i~~f~lGyap~~~~~l~~~l~~~~~~~~~l~~~g 91 (338)
T 1dd9_A 12 SGSMHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAG 91 (338)
T ss_dssp --------CHHHHHHHHHHHHHHHHTSGGGHHHHHHHHHTTCCHHHHHHHTCEEECSSSCHHHHHHCSSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCC
T ss_conf 87688999999999999999999967985089999999779999999875245266458999999975799889999778
Q ss_pred CCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf 21003465410000167168889707785888501001465530010387676535210110817888864331000023
Q gi|254780834|r 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVR 267 (648)
Q Consensus 188 l~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~ 267 (648)
|+..+++|. +||+|+|||||||+|.+|+|||||||++++ +.|||+|||||++|+|+++|||++.|++.|++
T Consensus 92 L~~~~~~g~-~~d~F~~Ri~fPI~d~~g~vigF~gR~~~~-~~~KYlNs~et~~f~K~~~lyg~~~ak~~i~~------- 162 (338)
T 1dd9_A 92 MLVTNDQGR-SYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNSPETDIFHKGRQLYGLYEAQQDNAE------- 162 (338)
T ss_dssp SEEEC---C-EEESCCSEEEEEEECTTSCEEEEEEEESSS-CSCSEEECCCCSSCCTTTCCBTHHHHHHTCSS-------
T ss_pred CEEECCCCC-CCCCCCCEEEEEEECCCCCEEEEECCCCCC-CCCCCCCCCCCCCCCCCCHHCCHHHHHHHHCC-------
T ss_conf 855646776-342226637998872789789983022467-88776079876666643022048999875225-------
Q ss_pred CCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 56787089971438899987435542113432136626789885126818996178866225777888888777536973
Q gi|254780834|r 268 RNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 (648)
Q Consensus 268 ~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~ 347 (648)
.+.+||||||||||+|||+||+||||+||||||++|+++|+|++++|++|||||+||++|+.|+++++++....|+.
T Consensus 163 ---~~~viivEG~~Dvi~l~q~Gi~n~VA~~GTa~t~~~~~~l~r~~~~i~l~~D~D~AG~~A~~r~~~~~l~~~~~g~~ 239 (338)
T 1dd9_A 163 ---PNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQ 239 (338)
T ss_dssp ---CSCEEEESSHHHHHHHHHTTCCCEEECCC-CCCHHHHHHHHHHCSEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCE
T ss_pred ---CCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf ---67279983579999998704224555545475458899876227856998457654304577489997665048975
Q ss_pred EEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 06752578888889972036688998864149927999999985302331457999999999885417998999999999
Q gi|254780834|r 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427 (648)
Q Consensus 348 v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~yl~~ 427 (648)
|+|+.||+|+|||||++++|+++|.+++++|.++++|+|+.+..+.++++|++++.+++++.++|+.|+|+++|++|+++
T Consensus 240 v~v~~lp~g~DPDe~~~~~G~~~~~~ll~~a~~~~eF~i~~l~~~~d~~spe~k~~~~~~i~~~I~~I~d~~~r~~yi~~ 319 (338)
T 1dd9_A 240 LRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQE 319 (338)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEHHHHHHHHHGGGCCTTSHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99997999979799975417999999985279899999999985589999999999999999999968999999999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999988765776
Q gi|254780834|r 428 IRDRLQQLFQKY 439 (648)
Q Consensus 428 la~~L~~~~~~~ 439 (648)
++++++......
T Consensus 320 la~~l~i~e~~~ 331 (338)
T 1dd9_A 320 LGNKLGILDDSQ 331 (338)
T ss_dssp HHHHHTCSCGGG
T ss_pred HHHHHCCCCHHH
T ss_conf 999848992999