HHsearch results for GI: 254780834 and protein with PDBid: 1q57_A
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.77 E-value=4.6e-19 Score=192.92 Aligned_cols=186 Identities=17% Similarity=0.146 Sum_probs=139.0
Q ss_pred HHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEE
Q ss_conf 99732677757899998506885351012442256774103455420599734523201210034654100001671688
Q gi|254780834|r 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208 (648)
Q Consensus 129 ~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~f 208 (648)
.++|..+.|. ..||.+|||+.+|+++|++|+... +|. .+++|
T Consensus 5 ~~~~~~~~~~--~~~L~~RgI~~~~~~~~~~~~~~~-----------------------------~~~-------~~~~~ 46 (503)
T 1q57_A 5 VWNFGESNGR--YSALTARGISKETCQKAGYWIAKV-----------------------------DGV-------MYQVA 46 (503)
T ss_dssp CCCBTTBCCB--CCCBTTTTBCHHHHHHHTEEECCB-----------------------------TTB-------CEEEE
T ss_pred ECCCCCCCCC--HHHHHHCCCCHHHHHHCCCEEEEC-----------------------------CCC-------EEEEE
T ss_conf 1345556657--103754888999999759168702-----------------------------892-------69997
Q ss_pred EEEECCCCEEEEECCCCCCCCCCEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf 89707785888501001465530010387676535210110817888864331000023567870899714388999874
Q gi|254780834|r 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 (648)
Q Consensus 209 Pi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~ 288 (648)
|++|..|+++||..|..++ ..||.+++ |+..|||++.+. ..+.++||||.|||+|++|
T Consensus 47 ~~~~~~G~~~~~~~R~~~k--~~~~~~~~------~~~~l~g~~~~~--------------~~~~v~i~EGe~Dals~~~ 104 (503)
T 1q57_A 47 DYRDQNGNIVSQKVRDKDK--NFKTTGSH------KSDALFGKHLWN--------------GGKKIVVTEGEIDMLTVME 104 (503)
T ss_dssp EEECTTSCEEEEEEEETTT--EEEEEECC------CTTCEETGGGCS--------------SEEEEEEESSHHHHHHHTT
T ss_pred EEECCCCCEEEEEEECCCC--CEEEECCC------CCCCCCCCEECC--------------CCCEEEEECCHHHHHHHHH
T ss_conf 2688699799999989999--86780799------876212201047--------------9998999886799999999
Q ss_pred CCCCCCHHHHHCCCCHHHHHHHHHC------CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 3554211343213662678988512------6818996178866225777888888777536973067525788888899
Q gi|254780834|r 289 AGVQNVVSSLGTALTEYQLRLLWKL------SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 (648)
Q Consensus 289 ~G~~n~va~~Gtalt~~~~~~l~r~------~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ 362 (648)
+|..+.++.+.++-+....+.+++. .++||||||+|+||++|+.+...++ ....++++.+| ++||.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~D~D~~G~~~~~~~~~~~-----~~~~~~~~~~~-~kd~~~~ 178 (503)
T 1q57_A 105 LQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQVL-----PAGKVRVAVLP-CKDANEC 178 (503)
T ss_dssp TTTTCSCEEEESSTTTTHHHHHHTTHHHHHTEEEEEEECCSSHHHHHHHHHHHHHS-----CGGGEEECCCS-SSSHHHH
T ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHC-----CCCEEEEEECC-CCCCHHH
T ss_conf 64888750215753124688999989871688989996289989999999999755-----77607998666-6683155
Q ss_pred HHCCCHHHHHHHHHHCCC
Q ss_conf 720366889988641499
Q gi|254780834|r 363 IRCYGKTAFEKLIVESLP 380 (648)
Q Consensus 363 ir~~G~eaf~~ll~~A~~ 380 (648)
+...+.++....+.++.+
T Consensus 179 ~~~~~~~~~~~~~~~a~~ 196 (503)
T 1q57_A 179 HLNGHDREIMEQVWNAGP 196 (503)
T ss_dssp HTTSCHHHHHHHHTTCCC
T ss_pred HHHCCHHHHHHHHHHHHH
T ss_conf 663130677899997442