HHSEARCH alignment of GI: 254780834 and SCOP domain: d1d0qa_

Alignment
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.93  E-value=3.4e-26  Score=256.33  Aligned_cols=99  Identities=39%  Similarity=0.772  Sum_probs=96.2

Q ss_pred             CCCCHHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHH
Q ss_conf             98788899999874888887541222101588777775575345888858787981789746713688887898998988
Q gi|254780834|r    1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL   80 (648)
Q Consensus         1 m~i~~~~i~~i~~~~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd~~~f~~~~   80 (648)
                      ||||++.|++|++++||++|+++|++|+|+|++     |+|+||||+|+||||+|++++++|||||||+|||+|+|||++
T Consensus         2 ~ri~~~~i~~ik~~i~I~dvi~~~~~l~~~G~~-----~~~~CPfh~d~~~S~~v~~~~~~~~Cf~Cg~~Gd~i~fv~~~   76 (102)
T d1d0qa_           2 HRIPEETIEAIRRGVDIVDVIGEYVQLKRQGRN-----YFGLCPFHGEKTPSFSVSPEKQIFHCFGCGAGGNAFTFLMDI   76 (102)
T ss_dssp             TTSCHHHHHHHHHHCCHHHHHTTTSCCEEETTE-----EEECCSSSCCSSCCEEEETTTTEEEETTTCCEECHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCHHHHHHHCCCEEECCCC-----EEEECCCCCCCCCCEEECCCCHHEEEEHHCCCCCHHHHHHHH
T ss_conf             888989999999869999998640773877985-----178602237988640674774320141101664099999999


Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             599979999999998188587768
Q gi|254780834|r   81 LGCSFIESVQRLAAIAGVPLPVVD  104 (648)
Q Consensus        81 ~~~~f~ea~~~la~~~gi~~~~~~  104 (648)
                      +|++|+||+++||+++||++|..+
T Consensus        77 ~~~sf~eAv~~La~~~gi~l~~~e  100 (102)
T d1d0qa_          77 EGIPFVEAAKRLAAKAGVDLSVYE  100 (102)
T ss_dssp             HTCCHHHHHHHHHHHHTCCCGGGC
T ss_pred             HCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf             796999999999999699988757


SCOP domain information

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: DNA primase zinc finger
domain: Zinc-binding domain of DNA primase
species: Bacillus stearothermophilus [TaxId: 1422]