Query gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 648
No_of_seqs 198 out of 1905
Neff 7.9
Searched_HMMs 13730
Date Wed Jun 1 10:32:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780834.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dd9a_ e.13.1.1 (A:) DNA prim 100.0 0 0 663.8 25.1 311 116-438 1-311 (314)
2 d1d0qa_ g.41.3.2 (A:) Zinc-bin 99.9 3.4E-26 2.5E-30 256.3 11.6 99 1-104 2-100 (102)
3 d1nuia1 e.13.1.2 (A:64-255) Pr 99.8 2.9E-19 2.1E-23 192.5 13.3 171 141-375 15-191 (192)
4 d1t6t1_ c.136.1.1 (1:) Hypothe 99.7 5E-18 3.6E-22 181.2 5.8 106 249-373 2-107 (108)
5 d2fcja1 c.136.1.1 (A:1-114) Hy 99.0 2.9E-11 2.1E-15 119.0 2.5 67 271-337 4-73 (114)
6 d1t3wa_ a.236.1.1 (A:) DNA pri 96.6 0.014 1E-06 39.2 9.8 107 485-602 6-112 (134)
7 d1b79a_ a.81.1.1 (A:) N-termin 96.4 0.042 3.1E-06 34.8 11.3 65 482-546 6-70 (102)
8 d1nuia1 e.13.1.2 (A:64-255) Pr 79.6 0.11 8.3E-06 30.8 -1.0 30 155-188 4-33 (192)
9 d1vdda_ e.49.1.1 (A:) Recombin 78.7 1.8 0.00013 19.9 6.4 83 270-357 78-172 (199)
10 d1h3na3 c.26.1.1 (A:1-225,A:41 63.0 3 0.00022 17.7 3.2 10 530-539 452-461 (494)
11 d1nuia2 g.41.3.2 (A:10-63) Zin 61.3 3.7 0.00027 17.0 3.4 28 41-70 6-33 (54)
12 d1mkpa_ c.45.1.1 (A:) Mapk pho 58.9 2 0.00015 19.4 1.7 22 75-96 103-124 (144)
13 d1dsqa_ g.40.1.1 (A:) Nucleic 58.5 1.1 7.8E-05 21.9 0.2 11 63-73 4-14 (26)
14 d1dqaa1 d.58.20.1 (A:587-703) 53.5 4.4 0.00032 16.2 2.7 88 272-360 5-104 (117)
15 d2fp7b1 b.47.1.3 (B:19-170) NS 53.5 3.3 0.00024 17.3 2.1 16 209-224 120-135 (152)
16 d1yl7a1 c.2.1.3 (A:2-105,A:215 51.8 4.6 0.00033 16.1 2.6 62 278-341 55-121 (135)
17 d1vh4a_ b.80.6.1 (A:) Stabiliz 51.8 3.5 0.00025 17.2 1.9 16 136-151 17-35 (413)
18 d2fomb1 b.47.1.3 (B:18-167) NS 51.1 3.6 0.00027 17.0 2.0 18 209-226 121-138 (150)
19 d1rxda_ c.45.1.1 (A:) Protein 48.8 4.9 0.00036 15.8 2.3 17 305-321 24-40 (152)
20 d1nc8a_ g.40.1.1 (A:) HIV nucl 48.8 2.6 0.00019 18.2 1.0 16 58-73 3-18 (29)
21 d1vqoz1 g.41.8.1 (Z:10-82) Rib 47.8 5.8 0.00042 15.1 2.7 26 41-69 28-53 (73)
22 d1ef4a_ a.4.11.1 (A:) RNA poly 47.6 5.5 0.0004 15.3 2.5 17 63-79 5-22 (55)
23 d1xm0a1 b.88.1.3 (A:1-143) Pep 46.5 5.5 0.0004 15.3 2.3 10 59-68 39-48 (143)
24 d1jj2y_ g.41.8.1 (Y:) Ribosoma 45.0 6.3 0.00046 14.8 2.7 26 41-69 28-53 (73)
25 d1wiia_ g.41.3.4 (A:) Hypothet 44.5 5.4 0.0004 15.4 2.0 29 42-70 25-56 (85)
26 d1diha1 c.2.1.3 (A:2-130,A:241 43.7 4.8 0.00035 15.8 1.7 46 277-324 81-127 (162)
27 d1duvg2 c.78.1.1 (G:151-333) O 42.6 6.7 0.00049 14.5 3.7 47 315-366 4-50 (183)
28 d1jmva_ c.26.2.4 (A:) Universa 41.2 7 0.00051 14.3 6.2 37 314-353 2-38 (140)
29 d1vhra_ c.45.1.1 (A:) VH1-rela 40.6 7.1 0.00052 14.3 3.1 13 284-296 42-54 (178)
30 d1vm6a3 c.2.1.3 (A:1-96,A:183- 40.0 7 0.00051 14.3 2.0 57 277-335 51-109 (128)
31 d1ffya3 c.26.1.1 (A:1-200,A:39 39.4 7.4 0.00054 14.1 2.6 25 355-379 408-432 (450)
32 d1g3qa_ c.37.1.10 (A:) Cell di 38.0 7.7 0.00056 14.0 2.8 54 291-348 112-165 (237)
33 d1tj1a1 a.176.1.1 (A:89-261) N 38.0 7.7 0.00056 13.9 2.6 67 357-426 28-98 (173)
34 d1j09a2 c.26.1.1 (A:1-305) Glu 37.9 6.5 0.00047 14.6 1.6 17 84-100 51-67 (305)
35 d1ohea2 c.45.1.1 (A:199-380) P 36.2 7.6 0.00056 14.0 1.7 13 214-226 23-35 (182)
36 d1dzla_ b.121.6.1 (A:) Papillo 35.5 7.9 0.00058 13.9 1.7 14 198-211 71-84 (455)
37 d2dkta2 g.93.1.1 (A:82-137) RI 34.1 8.7 0.00064 13.5 1.8 22 39-69 4-25 (56)
38 d1twfj_ a.4.11.1 (J:) RNA poly 33.5 7.7 0.00056 14.0 1.4 17 63-79 6-23 (65)
39 d1pj3a1 c.2.1.7 (A:280-573) Mi 33.0 9.1 0.00066 13.3 2.5 46 279-324 97-143 (294)
40 d1ykwa1 c.1.14.1 (A:146-428) R 32.4 9.2 0.00067 13.2 4.1 71 290-377 203-283 (283)
41 d1vd4a_ g.41.3.1 (A:) Transcri 32.3 9.2 0.00067 13.2 1.8 30 39-70 15-48 (62)
42 d1dxha2 c.78.1.1 (A:151-335) O 32.3 9.3 0.00067 13.2 3.5 47 315-366 4-50 (185)
43 d1mw9x_ e.10.1.1 (X:) DNA topo 31.4 9.5 0.00069 13.1 5.1 11 482-492 476-486 (591)
44 d1zr9a1 g.37.1.4 (A:28-94) Zin 30.1 9.7 0.00071 13.0 1.4 38 57-94 11-49 (67)
45 d1s6la1 a.4.5.79 (A:21-80) Alk 29.6 6.3 0.00046 14.8 0.4 11 211-221 45-55 (60)
46 d1wyka_ b.47.1.3 (A:) Viral ca 29.6 10 0.00074 12.9 2.4 12 209-220 106-117 (152)
47 d1pi1a_ a.29.7.1 (A:) Mob1a {H 29.0 10 0.00075 12.8 1.8 26 349-374 12-37 (185)
48 d3by8a1 d.110.6.1 (A:46-178) F 28.7 10 0.00076 12.8 4.3 17 205-221 102-118 (133)
49 d1jnua_ d.110.3.6 (A:) Photore 28.3 10 0.00076 12.8 1.3 18 205-222 82-99 (104)
50 d1seta1 a.2.7.1 (A:1-110) Sery 28.3 11 0.00077 12.7 10.1 65 571-639 27-91 (110)
51 d2hy5b1 c.114.1.1 (B:205-336) 28.2 11 0.00077 12.7 4.9 38 317-354 4-41 (132)
52 d1tafb_ a.22.1.3 (B:) TAF(II)6 28.1 11 0.00077 12.7 5.3 49 86-134 9-57 (70)
53 d1p0za_ d.110.6.1 (A:) Sensor 27.7 11 0.00079 12.6 2.8 17 205-221 103-119 (131)
54 d1ep5a_ b.47.1.3 (A:) Viral ca 27.6 11 0.00079 12.6 2.4 11 209-219 110-120 (156)
55 d1gtra2 c.26.1.1 (A:8-338) Glu 27.5 9.4 0.00068 13.2 1.0 17 199-215 175-191 (331)
56 d1ps1a_ a.128.1.4 (A:) Pentale 27.3 11 0.0008 12.6 4.0 16 509-524 196-211 (311)
57 d1vcpa_ b.47.1.3 (A:) Viral ca 27.2 11 0.0008 12.6 2.4 12 209-220 104-115 (149)
58 d1tv8a_ c.1.28.3 (A:) Molybden 26.9 11 0.00081 12.5 1.7 69 280-351 81-163 (327)
59 d1bywa_ d.110.3.6 (A:) Erg pot 26.0 11 0.00083 12.4 2.6 23 202-224 82-104 (110)
60 d1i7da_ e.10.1.1 (A:) DNA topo 25.5 12 0.00085 12.3 3.2 14 481-494 490-503 (620)
61 d1j72a2 d.109.1.1 (A:125-240) 25.0 12 0.00086 12.2 4.9 54 315-369 47-102 (116)
62 d1hyqa_ c.37.1.10 (A:) Cell di 24.4 12 0.00088 12.2 5.0 62 282-347 101-162 (232)
63 d1ul4a_ g.72.1.1 (A:) Squamosa 23.7 6.9 0.0005 14.4 -0.3 28 41-70 24-51 (81)
64 d1yzma1 a.2.19.1 (A:456-501) F 23.3 13 0.00092 12.0 6.8 43 590-632 3-45 (46)
65 d1chka_ d.2.1.7 (A:) Endochito 23.0 13 0.00093 11.9 6.6 19 62-80 46-65 (238)
66 d1sbqa_ c.124.1.6 (A:) 5,10-me 22.3 13 0.00096 11.8 1.2 17 206-222 102-120 (164)
67 d1okga1 c.46.1.2 (A:7-162) 3-m 22.2 13 0.00096 11.8 3.9 37 315-357 89-125 (156)
68 d2essa1 d.38.1.8 (A:1-149) Acy 21.5 14 0.00099 11.7 2.9 74 140-224 38-111 (149)
69 d1ev0a_ d.71.1.1 (A:) Cell div 21.4 11 0.00081 12.5 0.4 22 5-28 6-27 (58)
70 d1mzha_ c.1.10.1 (A:) Deoxyrib 21.4 14 0.00099 11.7 1.6 54 286-347 141-199 (225)
71 d2ji7a3 c.36.1.9 (A:370-552) O 20.8 14 0.001 11.6 6.2 98 248-356 5-111 (183)
72 d1hk8a_ c.7.1.3 (A:) Class III 20.7 14 0.001 11.6 1.9 13 289-301 254-266 (561)
73 d2huec1 a.22.1.1 (C:20-101) Hi 20.6 14 0.001 11.6 6.4 62 86-147 12-73 (82)
74 d1xl3c1 a.243.1.1 (C:2-92) Tye 20.6 14 0.001 11.6 7.5 49 386-434 25-78 (91)
75 d1nx4a_ b.82.2.8 (A:) Carbapen 20.4 11 0.00079 12.6 0.2 14 87-100 29-42 (271)
76 d1tq8a_ c.26.2.4 (A:) Hypothet 20.1 14 0.001 11.5 3.1 25 315-339 6-30 (147)
No 1
>d1dd9a_ e.13.1.1 (A:) DNA primase DnaG catalytic core {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=663.80 Aligned_cols=311 Identities=36% Similarity=0.673 Sum_probs=299.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCC
Q ss_conf 99999999999999973267775789999850688535101244225677410345542059973452320121003465
Q gi|254780834|r 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195 (648)
Q Consensus 116 ~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~ 195 (648)
+||++++.|++|||.+|+++.+++|++||++||+++++|++|+|||||.+|+.|+++|.++|++.+.+.++||+..+++|
T Consensus 1 ~L~~i~~~a~~~y~~~L~~~~~~~a~~YL~~Rgl~~~~i~~f~lGyap~~~~~l~~~l~~~~~~~~~l~~~gl~~~~~~g 80 (314)
T d1dd9a_ 1 TLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQG 80 (314)
T ss_dssp CHHHHHHHHHHHHHHHHTSGGGHHHHHHHHHTTCCHHHHHHHTCEEECSSSCHHHHHHCSSHHHHHHHHHTTSEEEC---
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHEEECCCC
T ss_conf 97999999999999995898408999999977989999987452547665799999986578751566653311211444
Q ss_pred CCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 41000016716888970778588850100146553001038767653521011081788886433100002356787089
Q gi|254780834|r 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFII 275 (648)
Q Consensus 196 ~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i 275 (648)
. +||+|+|||||||+|.+|+|||||||++++ ..|||+|||||++|+|+++|||++.|++.|++ .+++|
T Consensus 81 ~-~~d~F~~ri~fPI~d~~g~~i~f~gR~~~~-~~~KY~ns~et~~f~k~~~ly~~~~a~~~~~~----------~~~~i 148 (314)
T d1dd9a_ 81 R-SYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNSPETDIFHKGRQLYGLYEAQQDNAE----------PNRLL 148 (314)
T ss_dssp C-EEESCCSEEEEEEECTTSCEEEEEEEESSS-CSCSEEECCCCSSCCTTTCCBTHHHHHHTCSS----------CSCEE
T ss_pred C-CCHHCCCEEEEEEECCCCEEEEEEEEECCC-CCCCCCCCCCCCCCCCHHHCCCHHHHHHHHCC----------CCCEE
T ss_conf 3-100104406888850650389994023155-43235578763233311210219998764135----------66359
Q ss_pred EECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 97143889998743554211343213662678988512681899617886622577788888877753697306752578
Q gi|254780834|r 276 LVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 (648)
Q Consensus 276 ~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~ 355 (648)
|||||||||+|||+||+||||+||||+|++|+++|+|++++|++|||||+||++|+.|++++++++...|.+|+|+.+|+
T Consensus 149 ivEG~~Dvi~l~q~Gi~n~Va~~Gta~t~~~~~~l~~~~~~i~l~~D~D~AG~~A~~r~~~~~~~~~~~g~~v~v~~lp~ 228 (314)
T d1dd9a_ 149 VVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPD 228 (314)
T ss_dssp EESSHHHHHHHHHTTCCCEEECCC-CCCHHHHHHHHHHCSEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEEEECT
T ss_pred EEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 99456989999970421115677640015889998741786589850675222688868988668735997289996467
Q ss_pred CCCHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 88888997203668899886414992799999998530233145799999999988541799899999999999998876
Q gi|254780834|r 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435 (648)
Q Consensus 356 G~DPDe~ir~~G~eaf~~ll~~A~~l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~yl~~la~~L~~~ 435 (648)
|+|||||++++|+++|.+++++|.++++|+|+.+..+.++++|++++.+++++.++++.|+|+++|++|+++++++++..
T Consensus 229 g~DPDe~l~k~G~e~~~~ll~~a~~~~eFli~~~~~~~d~~s~e~k~~~~~~l~~~i~~i~d~~~r~~y~~~la~~lgis 308 (314)
T d1dd9a_ 229 GEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGIL 308 (314)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCEEHHHHHHHHHGGGCCTTSHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 67889998732799999887558989999999998558999999999999999999996899999999999999881998
Q ss_pred HHH
Q ss_conf 577
Q gi|254780834|r 436 FQK 438 (648)
Q Consensus 436 ~~~ 438 (648)
...
T Consensus 309 e~a 311 (314)
T d1dd9a_ 309 DDS 311 (314)
T ss_dssp CGG
T ss_pred HHH
T ss_conf 077
No 2
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.93 E-value=3.4e-26 Score=256.33 Aligned_cols=99 Identities=39% Similarity=0.772 Sum_probs=96.2
Q ss_pred CCCCHHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHH
Q ss_conf 98788899999874888887541222101588777775575345888858787981789746713688887898998988
Q gi|254780834|r 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80 (648)
Q Consensus 1 m~i~~~~i~~i~~~~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd~~~f~~~~ 80 (648)
||||++.|++|++++||++|+++|++|+|+|++ |+|+||||+|+||||+|++++++|||||||+|||+|+|||++
T Consensus 2 ~ri~~~~i~~ik~~i~I~dvi~~~~~l~~~G~~-----~~~~CPfh~d~~~S~~v~~~~~~~~Cf~Cg~~Gd~i~fv~~~ 76 (102)
T d1d0qa_ 2 HRIPEETIEAIRRGVDIVDVIGEYVQLKRQGRN-----YFGLCPFHGEKTPSFSVSPEKQIFHCFGCGAGGNAFTFLMDI 76 (102)
T ss_dssp TTSCHHHHHHHHHHCCHHHHHTTTSCCEEETTE-----EEECCSSSCCSSCCEEEETTTTEEEETTTCCEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCHHHHHHHCCCEEECCCC-----EEEECCCCCCCCCCEEECCCCHHEEEEHHCCCCCHHHHHHHH
T ss_conf 888989999999869999998640773877985-----178602237988640674774320141101664099999999
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 599979999999998188587768
Q gi|254780834|r 81 LGCSFIESVQRLAAIAGVPLPVVD 104 (648)
Q Consensus 81 ~~~~f~ea~~~la~~~gi~~~~~~ 104 (648)
+|++|+||+++||+++||++|..+
T Consensus 77 ~~~sf~eAv~~La~~~gi~l~~~e 100 (102)
T d1d0qa_ 77 EGIPFVEAAKRLAAKAGVDLSVYE 100 (102)
T ss_dssp HTCCHHHHHHHHHHHHTCCCGGGC
T ss_pred HCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 796999999999999699988757
No 3
>d1nuia1 e.13.1.2 (A:64-255) Primase fragment of primase-helicase protein {Bacteriophage T7 [TaxId: 10760]}
Probab=99.81 E-value=2.9e-19 Score=192.55 Aligned_cols=171 Identities=18% Similarity=0.198 Sum_probs=125.4
Q ss_pred HHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEE
Q ss_conf 99998506885351012442256774103455420599734523201210034654100001671688897077858885
Q gi|254780834|r 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220 (648)
Q Consensus 141 ~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f 220 (648)
..||++||||.+|+++|++|+... ++. .+++||++|..|++++|
T Consensus 15 ~~~L~~RGIs~et~~~~~~~~~~~-----------------------------~~~-------~~~~~p~~d~~G~~v~~ 58 (192)
T d1nuia1 15 YSALTARGISKETCQKAGYWIAKV-----------------------------DGV-------MYQVADYRDQNGNIVSQ 58 (192)
T ss_dssp CCCBGGGTBCHHHHHHHTEEEEEE-----------------------------TTE-------EEEEEEEECTTSCEEEE
T ss_pred HHHHHHCCCCHHHHHHCCEEEEEE-----------------------------CCE-------EEEEEEEECCCCCEEEE
T ss_conf 123455839999999779089950-----------------------------994-------79999568899989999
Q ss_pred ECCCCCCCCCCEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHH--
Q ss_conf 010014655300103876765352101108178888643310000235678708997143889998743554211343--
Q gi|254780834|r 221 GGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL-- 298 (648)
Q Consensus 221 ~gR~l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~-- 298 (648)
.+|..++. .++.+++ +...+|+++.+. ..+.++||||++||++++|+|..+++...
T Consensus 59 ~~R~~~k~--~~~~~~~------~~~~~~~~~~~~--------------~~~~iiI~EGe~Dals~~q~~~~~~~~~~~~ 116 (192)
T d1nuia1 59 KVRDKDKN--FKTTGSH------KSDALFGKHLWN--------------GGKKIVVTEGEIDMLTVMELQDCKYPVVSLG 116 (192)
T ss_dssp EEECTTCC--CEEEECC------CTTCCTTGGGCC--------------CBSCCEEESSHHHHHHHHHHHTTCSCEECCT
T ss_pred ECCCCCCC--CEECCCC------CCCCCEEEECCC--------------CCCEEEEECCHHHHHHHHHHCCCCCCEEECC
T ss_conf 72332442--2011479------877300100014--------------6747999886589999999668775446427
Q ss_pred -HCCCCHHHHHHHHHC---CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHH
Q ss_conf -213662678988512---6818996178866225777888888777536973067525788888899720366889988
Q gi|254780834|r 299 -GTALTEYQLRLLWKL---SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 (648)
Q Consensus 299 -Gtalt~~~~~~l~r~---~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~l 374 (648)
|++.+..++....++ ..+|++|||+|+||++|+.+..+++ .+..++++.+| ++||+|+++++|.+++.+.
T Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~Vvl~~DnD~AG~~aa~~~~~~l-----~~~~~~~~~~~-~KD~nd~l~~~~~~~~~~~ 190 (192)
T d1nuia1 117 HGASAAKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQVL-----PAGKVRVAVLP-CKDANECHLNGHDREIMEQ 190 (192)
T ss_dssp TTTTTHHHHHHHTHHHHTTBSCEEEECCSSHHHHHHHHHHHHHS-----CTTTEEECCCS-SSSHHHHHTTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHC-----CCCCEEEECCC-CCCHHHHHHCCCHHHHHHH
T ss_conf 50021166776778873478769997387889999999999975-----89969995189-9698999980998999996
Q ss_pred H
Q ss_conf 6
Q gi|254780834|r 375 I 375 (648)
Q Consensus 375 l 375 (648)
+
T Consensus 191 i 191 (192)
T d1nuia1 191 V 191 (192)
T ss_dssp H
T ss_pred H
T ss_conf 4
No 4
>d1t6t1_ c.136.1.1 (1:) Hypothetical protein aq_2086 {Aquifex aeolicus [TaxId: 63363]}
Probab=99.71 E-value=5e-18 Score=181.21 Aligned_cols=106 Identities=25% Similarity=0.316 Sum_probs=93.6
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCH
Q ss_conf 08178888643310000235678708997143889998743554211343213662678988512681899617886622
Q gi|254780834|r 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGL 328 (648)
Q Consensus 249 y~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~ 328 (648)
|+|..+.+.+++.. .+.+|||||||||++||++||+|+||++||++| +|+..|.+.+++||+|||+|.||+
T Consensus 2 ~~l~e~i~~l~~~~--------~~~viiVEG~~Dv~al~~~Gi~n~va~~Gt~~~-~~~~~l~~~~~~vii~~D~D~aG~ 72 (108)
T d1t6t1_ 2 RNLSEWIKELKKAS--------REAVILVEGKNDKKALSKFSIKNVIDLSGKRYA-DVVDMLEGKWEKVILLFDLDTHGE 72 (108)
T ss_dssp CSHHHHHHHHHHHT--------TTSEEEESSHHHHHHHHTTTCCCEEECTTSCHH-HHHHHHTTTCSEEEECCCSSHHHH
T ss_pred CCHHHHHHHHHHCC--------CCCEEEEECHHHHHHHHHHCCCEEEECCCCCCH-HHHHHHHHCCCEEEEEECCCHHHH
T ss_conf 67799999999747--------996899816699999998277638867987508-889999952894999968998999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHH
Q ss_conf 577788888877753697306752578888889972036688998
Q gi|254780834|r 329 RAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373 (648)
Q Consensus 329 kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ 373 (648)
+|+.|..+++.+. |+.| +.|||+|+++.|.+.+++
T Consensus 73 ~aa~kl~~~L~~~---g~~v-------d~~~~~~l~~~~~~~ie~ 107 (108)
T d1t6t1_ 73 RINQKMKELLSSQ---GFLV-------DENFRNFLKKWNIIHIEE 107 (108)
T ss_dssp HHHHHHHHHHHHT---TCEE-------ECHHHHHHHHTTCCCGGG
T ss_pred HHHHHHHHHHHHC---CCCC-------CCCHHHHHHHHHHHHHHC
T ss_conf 9999999999986---9977-------849999999975898853
No 5
>d2fcja1 c.136.1.1 (A:1-114) Hypothetical protein RBSTP2199 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.04 E-value=2.9e-11 Score=119.03 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=60.0
Q ss_pred CCEEEEECCHHHHHHHHHCCCCCCHHH-HHCCCCHHHHHHHHHCCC--EEEEEECCCCCCHHHHHHHHHH
Q ss_conf 870899714388999874355421134-321366267898851268--1899617886622577788888
Q gi|254780834|r 271 SSFIILVEGYMDVLSLCQAGVQNVVSS-LGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDL 337 (648)
Q Consensus 271 ~~~~i~vEGy~Dvi~l~~~G~~n~va~-~Gtalt~~~~~~l~r~~~--~vvl~fDgD~AG~kAa~Ra~e~ 337 (648)
.+.+|||||++||++++|+|++|||+. .|++++..|+..|+++.+ +||+|||+|+||++++.+..+.
T Consensus 4 ~~~viIvEG~~D~~~l~~~g~~~vv~~~~gg~~~~~~~~~l~~~~~~~~Iii~~D~D~aG~~~a~~l~~~ 73 (114)
T d2fcja1 4 VEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKLRRQFRRM 73 (114)
T ss_dssp CCEEEEESSHHHHHHHHHHBSSCCEEEECCSCCCHHHHHHHHHHTTTSEEEEECCSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 7989998078999999982899759947986043999999999827980899967976789999999987
No 6
>d1t3wa_ a.236.1.1 (A:) DNA primase DnaG, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=96.58 E-value=0.014 Score=39.23 Aligned_cols=107 Identities=15% Similarity=0.051 Sum_probs=71.8
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998477889999844300237998899999999999753889998999988511128999999999865433320
Q gi|254780834|r 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564 (648)
Q Consensus 485 ~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~elL~~L~~~~~~~~~~~ 564 (648)
+.+|+++|+||++...+.+......+.++.. .+...+++.+..++..+...+..+..+....+.+..+......
T Consensus 6 r~aI~lLL~~P~La~~~~~~~~l~~~~~~~~-~lL~~L~~~~~~~p~~~t~~Lle~~r~t~~~~~L~~La~~e~~----- 79 (134)
T d1t3wa_ 6 RILIGLLVQNPELATLVPPLENLDENKLPGL-GLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMWDDI----- 79 (134)
T ss_dssp HHHHHHHHHCGGGGGGCCCCTTSCGGGSTTH-HHHHHHHHHHHTSTTCCHHHHHHTTCSGGGHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHCHHHHHCCCCHHHHHHCCCCCH-HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCC-----
T ss_conf 9999999869397752984667754568221-9999999999868999999999987098699999999866556-----
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25689988999999999999985899999999999999
Q gi|254780834|r 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 (648)
Q Consensus 565 ~~~e~~~~d~~e~~~~~l~l~~r~~~L~r~l~ele~~l 602 (648)
.+..+....+.+++.-..+. ..+.++.++....
T Consensus 80 ----~~~~~~~~ef~d~l~~l~~~-~~~~~~~~L~~k~ 112 (134)
T d1t3wa_ 80 ----ADKNIAEQTFTDSLNHMFDS-LLELRQEELIARE 112 (134)
T ss_dssp ----HHHHHHHHHHHHHHHTTTHH-HHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf ----88178999999999999998-9999999998653
No 7
>d1b79a_ a.81.1.1 (A:) N-terminal domain of DnaB helicase {Escherichia coli [TaxId: 562]}
Probab=96.37 E-value=0.042 Score=34.79 Aligned_cols=65 Identities=8% Similarity=-0.008 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 79999999998477889999844300237998899999999999753889998999988511128
Q gi|254780834|r 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 (648)
Q Consensus 482 ~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l 546 (648)
-.|+.+|..|+.+|+.+.++...+...+|.++.++.||+.+.+.+.++...+.-.+...+...+.
T Consensus 6 eaE~~vLg~lL~~~~~~~~v~~~l~~~dFy~~~h~~If~ai~~l~~~g~~iD~vtv~~~l~~~~~ 70 (102)
T d1b79a_ 6 EAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQ 70 (102)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHTTCCGGGSSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
T ss_conf 99999999999391389999975399986519899999999998506999889999999987798
No 8
>d1nuia1 e.13.1.2 (A:64-255) Primase fragment of primase-helicase protein {Bacteriophage T7 [TaxId: 10760]}
Probab=79.57 E-value=0.11 Score=30.82 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCC
Q ss_conf 0124422567741034554205997345232012
Q gi|254780834|r 155 EMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 (648)
Q Consensus 155 ~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl 188 (648)
..+.+|.+ +..+.||.++|++.+.+.+.|+
T Consensus 4 ~~~~~~~~----~g~~~~L~~RGIs~et~~~~~~ 33 (192)
T d1nuia1 4 NVWNFGES----NGRYSALTARGISKETCQKAGY 33 (192)
T ss_dssp CCBCGGGT----TCBCCCBGGGTBCHHHHHHHTE
T ss_pred EECCCCCC----CCCHHHHHHCCCCHHHHHHCCE
T ss_conf 77567657----7781234558399999997790
No 9
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]}
Probab=78.71 E-value=1.8 Score=19.86 Aligned_cols=83 Identities=20% Similarity=0.138 Sum_probs=55.0
Q ss_pred CCCEEEEECCHHHHHHHHHCCCCCCH-HHHHCCC------CHHHHH---HHHHC--CCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 78708997143889998743554211-3432136------626789---88512--681899617886622577788888
Q gi|254780834|r 270 SSSFIILVEGYMDVLSLCQAGVQNVV-SSLGTAL------TEYQLR---LLWKL--SPRIVLCFDGDDPGLRAAYKAIDL 337 (648)
Q Consensus 270 ~~~~~i~vEGy~Dvi~l~~~G~~n~v-a~~Gtal------t~~~~~---~l~r~--~~~vvl~fDgD~AG~kAa~Ra~e~ 337 (648)
....+.|||-..|++++-..|.-+.+ -.||-.+ +++++. ++.|. ..+|||+++.+--|..-|.=..+
T Consensus 78 d~~~iCVVE~~~Dl~~iE~t~~y~G~YhVL~G~ispl~gi~p~~l~i~~L~~r~~~~~EiIlA~~~t~EGe~Ta~yi~~- 156 (199)
T d1vdda_ 78 DQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQR- 156 (199)
T ss_dssp CTTEEEEESSHHHHHHTTTTSSCCSEEEECSSCCBGGGTBCTTTSTTGGGGGGCCTTCEEEECCCSSHHHHHHHHHHHH-
T ss_pred CCCEEEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH-
T ss_conf 7646999966899899985231000155415755844487741011267777505776799982698650899999999-
Q ss_pred HHHHHHCCCCEEEEECCCCC
Q ss_conf 87775369730675257888
Q gi|254780834|r 338 VLCHLIPGNRVNFVLLSRGE 357 (648)
Q Consensus 338 ~l~~l~~g~~v~vv~LP~G~ 357 (648)
+++ +..++|-.|..|.
T Consensus 157 ---~l~-~~~ikitrlA~Gi 172 (199)
T d1vdda_ 157 ---LLE-PLGAAISRIAYGV 172 (199)
T ss_dssp ---HHT-TSSCEEEECCBCB
T ss_pred ---HHH-HCCCEEEEECCCC
T ss_conf ---852-3496287602268
No 10
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}
Probab=63.03 E-value=3 Score=17.68 Aligned_cols=10 Identities=0% Similarity=-0.094 Sum_probs=4.1
Q ss_pred CCCCHHHHHH
Q ss_conf 8999899998
Q gi|254780834|r 530 KYFLPEEIHQ 539 (648)
Q Consensus 530 ~~~~~~~l~~ 539 (648)
+.+++.++.+
T Consensus 452 NVIdP~~iI~ 461 (494)
T d1h3na3 452 NGVMVGPFVK 461 (494)
T ss_dssp CCCBHHHHHH
T ss_pred CCCCHHHHHH
T ss_conf 8179899998
No 11
>d1nuia2 g.41.3.2 (A:10-63) Zinc-binding domain of primase-helicase {Bacteriophage T7 [TaxId: 10760]}
Probab=61.33 E-value=3.7 Score=16.95 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=18.7
Q ss_pred EECCCCCCCCCCEEEECCCCEEEECCCCCC
Q ss_conf 534588885878798178974671368888
Q gi|254780834|r 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 (648)
Q Consensus 41 ~~cPfh~ektpsf~v~~~~~~~~cf~c~~~ 70 (648)
-.||=..-. =-+.|+. .|-.|||+|+..
T Consensus 6 ~pCp~CgSS-Da~a~y~-DGh~~CFsC~~~ 33 (54)
T d1nuia2 6 IPCDNCGSS-DGNSLFS-DGHTFCYVCEKW 33 (54)
T ss_dssp ECCSSSCCS-SCEEEET-TSCEEETTTCCE
T ss_pred CCCCCCCCC-CCCEECC-CCCEEEEECCCC
T ss_conf 678888888-7884835-998685008889
No 12
>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]}
Probab=58.87 E-value=2 Score=19.36 Aligned_cols=22 Identities=14% Similarity=0.150 Sum_probs=11.1
Q ss_pred HHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9989885999799999999981
Q gi|254780834|r 75 SFLSALLGCSFIESVQRLAAIA 96 (648)
Q Consensus 75 ~f~~~~~~~~f~ea~~~la~~~ 96 (648)
-++|.+.++++.||++.+..+-
T Consensus 103 aYLm~~~~~~~~~A~~~v~~~R 124 (144)
T d1mkpa_ 103 AYLMQKLNLSMNDAYDIVKMKK 124 (144)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHC
T ss_conf 9999985989999999999989
No 13
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=58.50 E-value=1.1 Score=21.87 Aligned_cols=11 Identities=45% Similarity=0.996 Sum_probs=8.8
Q ss_pred EECCCCCCCCH
Q ss_conf 71368888789
Q gi|254780834|r 63 YCFSCHVKGDH 73 (648)
Q Consensus 63 ~cf~c~~~gd~ 73 (648)
-||+||+.|.+
T Consensus 4 vcfscgktghi 14 (26)
T d1dsqa_ 4 VCFSCGKTGHI 14 (26)
T ss_dssp BCTTTCCBSSC
T ss_pred EEEECCCCCCC
T ss_conf 77756876651
No 14
>d1dqaa1 d.58.20.1 (A:587-703) NAD-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.49 E-value=4.4 Score=16.18 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=50.2
Q ss_pred CEEEEECCHHHHHHHHH--CCCCC--CHHHHHCCCCHHHHHHHH--HC--CCEEEEEE---CCCCCCHHHHHHHHHHHHH
Q ss_conf 70899714388999874--35542--113432136626789885--12--68189961---7886622577788888877
Q gi|254780834|r 272 SFIILVEGYMDVLSLCQ--AGVQN--VVSSLGTALTEYQLRLLW--KL--SPRIVLCF---DGDDPGLRAAYKAIDLVLC 340 (648)
Q Consensus 272 ~~~i~vEGy~Dvi~l~~--~G~~n--~va~~Gtalt~~~~~~l~--r~--~~~vvl~f---DgD~AG~kAa~Ra~e~~l~ 340 (648)
.+++.++.--|+..+.+ ..-+| .+.... .=|..|.+++. .+ .+.|++-| =||++|+|-.-+|.+.+..
T Consensus 5 aP~f~f~~~~~A~~f~~Wl~~~e~~~~ik~~~-esTSr~~rL~~i~~~i~G~~v~lrF~~~TGDA~G~NMvT~at~~a~~ 83 (117)
T d1dqaa1 5 GPVVRLPRACDSAEVKAWLETSEGFAVIKEAF-DSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALS 83 (117)
T ss_dssp CCEEECSSHHHHHHHHHHHTSHHHHHHHHHHH-HTTCSSEEEEEEEEEEETTEEEEEEEEEETTBCCHHHHHHHHHHHHH
T ss_pred CCEEEECCHHHHHHHHHHHHCHHHHHHHHHHH-HCCCCCEEECCCEEEEECCEEEEEEEEECCCHHHCHHHHHHHHHHHH
T ss_conf 51799499999999999983713399999999-71596377322378988788999999872621106578999999999
Q ss_pred HHHCCC-CEEEEECCCCCCHH
Q ss_conf 753697-30675257888888
Q gi|254780834|r 341 HLIPGN-RVNFVLLSRGEDPD 360 (648)
Q Consensus 341 ~l~~g~-~v~vv~LP~G~DPD 360 (648)
.+.+.. ...++.|..+...|
T Consensus 84 ~i~~~~p~~~~~~lsGN~ctD 104 (117)
T d1dqaa1 84 KLHEYFPEMQILAVSGNYCTD 104 (117)
T ss_dssp HHHHHCTTCEEEESCCSSSCC
T ss_pred HHHHHCCCCEEEEEECCCCCC
T ss_conf 999859997399985546665
No 15
>d2fp7b1 b.47.1.3 (B:19-170) NS3 protease {West nile virus [TaxId: 11082]}
Probab=53.49 E-value=3.3 Score=17.34 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=13.4
Q ss_pred EEEECCCCEEEEECCC
Q ss_conf 8970778588850100
Q gi|254780834|r 209 PIRSSRGQVIAFGGRT 224 (648)
Q Consensus 209 Pi~~~~g~~i~f~gR~ 224 (648)
||.|..|+|||+.|--
T Consensus 120 PI~n~~G~vVGLYGNG 135 (152)
T d2fp7b1 120 PIVDKNGDVIGLYGNG 135 (152)
T ss_dssp EEECTTSCEEEESCCE
T ss_pred CEECCCCCEEEEECCE
T ss_conf 6275699799985364
No 16
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=51.83 E-value=4.6 Score=16.07 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=42.1
Q ss_pred CCHHHHHH-HHHCCCCCCHHHHHCCCCHHHHHHHHHC---CCEEEEEEC-CCCCCHHHHHHHHHHHHHH
Q ss_conf 14388999-8743554211343213662678988512---681899617-8866225777888888777
Q gi|254780834|r 278 EGYMDVLS-LCQAGVQNVVSSLGTALTEYQLRLLWKL---SPRIVLCFD-GDDPGLRAAYKAIDLVLCH 341 (648)
Q Consensus 278 EGy~Dvi~-l~~~G~~n~va~~Gtalt~~~~~~l~r~---~~~vvl~fD-gD~AG~kAa~Ra~e~~l~~ 341 (648)
|+-++.+. +..+|++-||+| |-||++|+..|+.+ ++++-+++= +=.-|.+...+.++.+...
T Consensus 55 ~~~~~~~~~~~~~~~~~ViGT--TG~~~~~~~~l~~~~~~~~~ipil~apNfSlGvnll~~l~~~aa~~ 121 (135)
T d1yl7a1 55 DVVMGNLEFLIDNGIHAVVGT--TGFTAERFQQVESWLVAKPNTSVLIAPNFTSFVPGVLLAVRRIAER 121 (135)
T ss_dssp TTHHHHHHHHHHTTCEEEECC--CCCCHHHHHHHHHHHHSCTTCEEEECSCCGGGHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHCCCCEEEEC--CCCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999886498779954--4222557999999998568988797487458999999999999985
No 17
>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]}
Probab=51.78 E-value=3.5 Score=17.16 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=7.4
Q ss_pred CCHHHHHHH---HHCCCCH
Q ss_conf 775789999---8506885
Q gi|254780834|r 136 RDKRLHYYL---DERGIDS 151 (648)
Q Consensus 136 ~~~~a~~yl---~~Rg~~~ 151 (648)
..++|+.|| .+.||..
T Consensus 17 ~~~~~~~~l~~f~~~GlPt 35 (413)
T d1vh4a_ 17 RSPQAQQHLQQLLRTGLPT 35 (413)
T ss_dssp CCHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHHHHHCCCCC
T ss_conf 6299999999999729889
No 18
>d2fomb1 b.47.1.3 (B:18-167) NS3 protease {Dengue virus type 2 [TaxId: 11060]}
Probab=51.12 E-value=3.6 Score=16.97 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=15.1
Q ss_pred EEEECCCCEEEEECCCCC
Q ss_conf 897077858885010014
Q gi|254780834|r 209 PIRSSRGQVIAFGGRTLS 226 (648)
Q Consensus 209 Pi~~~~g~~i~f~gR~l~ 226 (648)
||.|..|+|||+.|--+-
T Consensus 121 PIin~~G~vVGLYGNGv~ 138 (150)
T d2fomb1 121 PIVDKKGKVVGLYGNGVV 138 (150)
T ss_dssp EEECTTSCEEEETTCEEE
T ss_pred CEECCCCCEEEEECCEEE
T ss_conf 648789979999546599
No 19
>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human (Homo sapiens), pr-1 [TaxId: 9606]}
Probab=48.84 E-value=4.9 Score=15.79 Aligned_cols=17 Identities=12% Similarity=0.003 Sum_probs=6.4
Q ss_pred HHHHHHHHCCCEEEEEE
Q ss_conf 67898851268189961
Q gi|254780834|r 305 YQLRLLWKLSPRIVLCF 321 (648)
Q Consensus 305 ~~~~~l~r~~~~vvl~f 321 (648)
+.+..|+++.-+.|+++
T Consensus 24 ~f~~~l~~~~i~~Iv~l 40 (152)
T d1rxda_ 24 KFIEELKKYGVTTIVRV 40 (152)
T ss_dssp HHHHHHHHTTEEEEEEC
T ss_pred HHHHHHHHHCCEEEEEC
T ss_conf 99999998398188301
No 20
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=48.84 E-value=2.6 Score=18.23 Aligned_cols=16 Identities=19% Similarity=0.663 Sum_probs=12.6
Q ss_pred CCCEEEECCCCCCCCH
Q ss_conf 8974671368888789
Q gi|254780834|r 58 SKGFYYCFSCHVKGDH 73 (648)
Q Consensus 58 ~~~~~~cf~c~~~gd~ 73 (648)
.+..-+||-||+-|-+
T Consensus 3 qr~~ikCfNCGkeGH~ 18 (29)
T d1nc8a_ 3 QRKVIRCWNCGKEGHS 18 (29)
T ss_dssp CCCCCBCTTTSCBSSC
T ss_pred CCCEEEEECCCCCCHH
T ss_conf 7536676527863230
No 21
>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=47.75 E-value=5.8 Score=15.13 Aligned_cols=26 Identities=23% Similarity=0.618 Sum_probs=18.3
Q ss_pred EECCCCCCCCCCEEEECCCCEEEECCCCC
Q ss_conf 53458888587879817897467136888
Q gi|254780834|r 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 (648)
Q Consensus 41 ~~cPfh~ektpsf~v~~~~~~~~cf~c~~ 69 (648)
-.|||.+-.+ +. --.-|+|+|=.||.
T Consensus 28 y~Cp~Cgk~~--vk-R~a~GIW~C~kC~~ 53 (73)
T d1vqoz1 28 HACPNCGEDR--VD-RQGTGIWQCSYCDY 53 (73)
T ss_dssp BCCSSSSCSC--EE-EEETTEEEETTTCC
T ss_pred CCCCCCCCCE--EE-EEEEEEEECCCCCC
T ss_conf 6198879960--38-98888888899999
No 22
>d1ef4a_ a.4.11.1 (A:) RNA polymerase subunit RPB10 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=47.64 E-value=5.5 Score=15.29 Aligned_cols=17 Identities=18% Similarity=0.336 Sum_probs=10.6
Q ss_pred EECCCCC-CCCHHHHHHH
Q ss_conf 7136888-8789899898
Q gi|254780834|r 63 YCFSCHV-KGDHLSFLSA 79 (648)
Q Consensus 63 ~cf~c~~-~gd~~~f~~~ 79 (648)
.||+||+ =||.+..+.+
T Consensus 5 RCFTCGkvia~k~~~y~~ 22 (55)
T d1ef4a_ 5 RCLSCGKPVSAYFNEYQR 22 (55)
T ss_dssp SCSCTTSCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 747885418999999999
No 23
>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}
Probab=46.45 E-value=5.5 Score=15.29 Aligned_cols=10 Identities=20% Similarity=0.401 Sum_probs=4.1
Q ss_pred CCEEEECCCC
Q ss_conf 9746713688
Q gi|254780834|r 59 KGFYYCFSCH 68 (648)
Q Consensus 59 ~~~~~cf~c~ 68 (648)
.|+|+|-+||
T Consensus 39 ~G~Y~C~~C~ 48 (143)
T d1xm0a1 39 EGLYVDIVSG 48 (143)
T ss_dssp SEEEEESSTT
T ss_pred CCEEEECCCC
T ss_conf 8548852456
No 24
>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=45.02 E-value=6.3 Score=14.80 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=17.7
Q ss_pred EECCCCCCCCCCEEEECCCCEEEECCCCC
Q ss_conf 53458888587879817897467136888
Q gi|254780834|r 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 (648)
Q Consensus 41 ~~cPfh~ektpsf~v~~~~~~~~cf~c~~ 69 (648)
-.|||.+-.. +. --.-|+|+|=.||.
T Consensus 28 y~Cp~Cgk~~--vk-R~a~GIW~C~kC~~ 53 (73)
T d1jj2y_ 28 HKCPVCGFKK--LK-RAGTGIWMCGHCGY 53 (73)
T ss_dssp BCCSSSCCSC--EE-EEETTEEEETTTCC
T ss_pred CCCCCCCCCC--EE-EEEEEEEECCCCCC
T ss_conf 6498889882--28-89988888799998
No 25
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=44.52 E-value=5.4 Score=15.36 Aligned_cols=29 Identities=28% Similarity=0.678 Sum_probs=19.4
Q ss_pred ECCCCC-CCCCCEEEECCC--CEEEECCCCCC
Q ss_conf 345888-858787981789--74671368888
Q gi|254780834|r 42 CCPFHD-EKTPSFHCNDSK--GFYYCFSCHVK 70 (648)
Q Consensus 42 ~cPfh~-ektpsf~v~~~~--~~~~cf~c~~~ 70 (648)
-|||.+ |++=+..+.-.. +.-+|--||..
T Consensus 25 ~CPfCnh~~sV~vk~dkk~~~g~l~C~vCg~~ 56 (85)
T d1wiia_ 25 TCPFCNHEKSCDVKMDRARNTGVISCTVCLEE 56 (85)
T ss_dssp CCTTTCCSSCEEEEEETTTTEEEEEESSSCCE
T ss_pred CCCCCCCCCEEEEEEEECCCEEEEEEECCCCE
T ss_conf 19978898759999992389899997507881
No 26
>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}
Probab=43.70 E-value=4.8 Score=15.82 Aligned_cols=46 Identities=22% Similarity=0.365 Sum_probs=33.4
Q ss_pred ECCHHHHHHH-HHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 7143889998-74355421134321366267898851268189961788
Q gi|254780834|r 277 VEGYMDVLSL-CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGD 324 (648)
Q Consensus 277 vEGy~Dvi~l-~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD 324 (648)
-|+-++.+.. .++|++-||+|-| |+++|...|+.+++++-+++=+-
T Consensus 81 p~~~~~~~~~a~~~~~~~ViGTTG--~~~~~~~~i~~~a~~ipi~~apN 127 (162)
T d1diha1 81 PEGTLNHLAFCRQHGKGMVIGTTG--FDEAGKQAIRDAAADIAIVFAAN 127 (162)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCC--CCHHHHHHHHHHTTTSCEEECSC
T ss_pred HHHHHHHHHHHHHCCCEEEEECCC--CCHHHHHHHHHHCCCCCEEEECC
T ss_conf 888899999997356306982377--76788999999748998899761
No 27
>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}
Probab=42.61 E-value=6.7 Score=14.51 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=28.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCC
Q ss_conf 8189961788662257778888887775369730675257888888997203
Q gi|254780834|r 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 (648)
Q Consensus 315 ~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~ 366 (648)
+++.++|=|| |.+-+.+++=.+++. -|+++.++. |++..|++.+.+.
T Consensus 4 ~~l~i~~vGD--~~nnv~~Sli~~~~~--~g~~l~~~~-P~~~~~~~~~~~~ 50 (183)
T d1duvg2 4 NEMTLVYAGD--ARNNMGNSMLEAAAL--TGLDLRLVA-PQACWPEAALVTE 50 (183)
T ss_dssp GGCEEEEESC--TTSHHHHHHHHHHHH--HCCEEEEEC-CGGGCCCHHHHHH
T ss_pred CCCEEEEECC--CCCHHHHHHHHHHHH--CCCEEEEEE-CHHHHHHHHHHHH
T ss_conf 7878999937--824899999999998--499799971-3676311899999
No 28
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}
Probab=41.22 E-value=7 Score=14.34 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=30.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 6818996178866225777888888777536973067525
Q gi|254780834|r 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 (648)
Q Consensus 314 ~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~L 353 (648)
.++|+++.|+....++|...|++++... +-.+.++..
T Consensus 2 yk~ILv~vD~s~~s~~al~~A~~~a~~~---~~~v~~lhv 38 (140)
T d1jmva_ 2 YKHILVAVDLSEESPILLKKAVGIAKRH---DAKLSIIHV 38 (140)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHH---TCEEEEEEE
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHC---CCEEEEEEE
T ss_conf 8709999879989999999999999874---990999999
No 29
>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.63 E-value=7.1 Score=14.27 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=6.1
Q ss_pred HHHHHCCCCCCHH
Q ss_conf 9987435542113
Q gi|254780834|r 284 LSLCQAGVQNVVS 296 (648)
Q Consensus 284 i~l~~~G~~n~va 296 (648)
-.|...||+.+|.
T Consensus 42 ~~L~~~gI~~Iin 54 (178)
T d1vhra_ 42 PKLQKLGITHVLN 54 (178)
T ss_dssp HHHHHHTCCEEEE
T ss_pred HHHHHCCCEEEEE
T ss_conf 9999869979997
No 30
>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}
Probab=39.98 E-value=7 Score=14.33 Aligned_cols=57 Identities=23% Similarity=0.135 Sum_probs=34.9
Q ss_pred ECCHHHHHH-HHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCC-CCCHHHHHHHH
Q ss_conf 714388999-874355421134321366267898851268189961788-66225777888
Q gi|254780834|r 277 VEGYMDVLS-LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGD-DPGLRAAYKAI 335 (648)
Q Consensus 277 vEGy~Dvi~-l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD-~AG~kAa~Ra~ 335 (648)
-++-.+.+. +.++|++-+++| |.+|++|...|+.+++++=+++=.- .-|-.+.++.+
T Consensus 51 p~~~~~~l~~~~~~~~p~ViGT--TG~~~~~~~~i~~~ak~~pv~~a~N~s~~~~~l~~~~ 109 (128)
T d1vm6a3 51 PEALPKTVDLCKKYRAGLVLGT--TALKEEHLQMLRELSKEVPVVQAYSRTVFAIGALKAA 109 (128)
T ss_dssp GGGHHHHHHHHHHHTCEEEECC--CSCCHHHHHHHHHHTTTSEEEECSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEC--CCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHH
T ss_conf 8999999999874599779971--7899999999999871599986633676999999999
No 31
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=39.40 E-value=7.4 Score=14.12 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=15.0
Q ss_pred CCCCHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 8888889972036688998864149
Q gi|254780834|r 355 RGEDPDSFIRCYGKTAFEKLIVESL 379 (648)
Q Consensus 355 ~G~DPDe~ir~~G~eaf~~ll~~A~ 379 (648)
++.||++++.++|+|+++-++.++.
T Consensus 408 N~I~p~dii~~yGaDalR~~l~s~~ 432 (450)
T d1ffya3 408 NVIVPDQVVKQKGADIARLWVSSTD 432 (450)
T ss_dssp CCCCHHHHHHHTCHHHHHHHHHTSC
T ss_pred CCCCHHHHHHHHCCHHHHHHHHCCC
T ss_conf 9859899998819489999997099
No 32
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=38.03 E-value=7.7 Score=13.96 Aligned_cols=54 Identities=9% Similarity=0.032 Sum_probs=33.6
Q ss_pred CCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 5421134321366267898851268189961788662257778888887775369730
Q gi|254780834|r 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 (648)
Q Consensus 291 ~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v 348 (648)
+..++=-++..++......+. .++.|++.-.+|..+..++.|.++++. +.+..+
T Consensus 112 ~d~IiiD~~~~~~~~~~~~l~-~aD~viiv~~~~~~s~~~~~~~~~~~~---~~~~~~ 165 (237)
T d1g3qa_ 112 FDFILIDCPAGLQLDAMSAML-SGEEALLVTNPEISCLTDTMKVGIVLK---KAGLAI 165 (237)
T ss_dssp CSEEEEECCSSSSHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHHHH---HTTCEE
T ss_pred CCEEEECCCCCCCCCCHHHHH-HHHCCCCCCCCCCEECCHHHHHHHHHH---HHHHHH
T ss_conf 898998043321111001222-221034343210000110367777775---310234
No 33
>d1tj1a1 a.176.1.1 (A:89-261) N-terminal domain of bifunctional PutA protein {Escherichia coli [TaxId: 562]}
Probab=37.98 E-value=7.7 Score=13.95 Aligned_cols=67 Identities=9% Similarity=-0.025 Sum_probs=37.5
Q ss_pred CCHHHH--HHCCCHHHHHHHHHHCCCHH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 888899--72036688998864149927--99999998530233145799999999988541799899999999
Q gi|254780834|r 357 EDPDSF--IRCYGKTAFEKLIVESLPLV--DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426 (648)
Q Consensus 357 ~DPDe~--ir~~G~eaf~~ll~~A~~l~--dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~yl~ 426 (648)
.+|+.- +... ...+.+.+.+..... .=.++.++..|+++|+||.+-.. +.+.+-+|||...++..++
T Consensus 28 ~~~~~~~~i~~~-A~~lV~~vR~~~~~~~~~~~ld~fL~EY~Lss~EGiaLMC--LAEALLRIPD~~T~D~LI~ 98 (173)
T d1tj1a1 28 LPQPVAEQAHKL-AYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMC--LAEALLRIPDKATRDALIR 98 (173)
T ss_dssp CCHHHHHHHHHH-HHHHHHHHHTTTSTTTTTTC--------------CHHHHH--HHHHHHTSSSHHHHHHCCH
T ss_pred CCHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHH--HHHHHHCCCCHHHHHHHHH
T ss_conf 987889999999-9999999985224455542799999986999688899999--9999981885677888999
No 34
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}
Probab=37.92 E-value=6.5 Score=14.64 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHHHCCCC
Q ss_conf 97999999999818858
Q gi|254780834|r 84 SFIESVQRLAAIAGVPL 100 (648)
Q Consensus 84 ~f~ea~~~la~~~gi~~ 100 (648)
.|.+++..--+..|+.-
T Consensus 51 ~~~~~I~~dL~wLgi~w 67 (305)
T d1j09a2 51 GAEERILAALKWLGLSY 67 (305)
T ss_dssp THHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 89999999999973686
No 35
>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.17 E-value=7.6 Score=14.00 Aligned_cols=13 Identities=31% Similarity=0.394 Sum_probs=9.0
Q ss_pred CCCEEEEECCCCC
Q ss_conf 7858885010014
Q gi|254780834|r 214 RGQVIAFGGRTLS 226 (648)
Q Consensus 214 ~g~~i~f~gR~l~ 226 (648)
-|++|||++-...
T Consensus 23 P~~~ia~s~P~~~ 35 (182)
T d1ohea2 23 PDRFIAFCGPHSR 35 (182)
T ss_dssp TTTEEEECCCCSS
T ss_pred CCCEEEECCCCCC
T ss_conf 6876998378766
No 36
>d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human papillomavirus type 16 [TaxId: 333760]}
Probab=35.54 E-value=7.9 Score=13.85 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=7.0
Q ss_pred CCCCCCCEEEEEEE
Q ss_conf 00001671688897
Q gi|254780834|r 198 SYDRFRNRLIFPIR 211 (648)
Q Consensus 198 ~~d~Fr~Ri~fPi~ 211 (648)
.||.=+.|+++-++
T Consensus 71 ~ynP~~eRLVW~l~ 84 (455)
T d1dzla_ 71 FYNPDTQRLVWACV 84 (455)
T ss_dssp TSCTTTEEEEEEEE
T ss_pred CCCCCCCEEEEEEE
T ss_conf 76987656778888
No 37
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.06 E-value=8.7 Score=13.46 Aligned_cols=22 Identities=36% Similarity=0.803 Sum_probs=14.1
Q ss_pred EEEECCCCCCCCCCEEEECCCCEEEECCCCC
Q ss_conf 5753458888587879817897467136888
Q gi|254780834|r 39 YWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 (648)
Q Consensus 39 ~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~ 69 (648)
|=..|.|-+ .+|+.|||=+||.
T Consensus 4 fC~iC~l~d---------ddk~~yHC~~Cgi 25 (56)
T d2dkta2 4 YCSICHLFD---------KDKRQYHCESCGI 25 (56)
T ss_dssp ECSSSCCEE---------CSSSEEEETTTTE
T ss_pred ECCCCCCCC---------CCCCCCCCCCCCC
T ss_conf 787377546---------8887665999980
No 38
>d1twfj_ a.4.11.1 (J:) RNA polymerase subunit RPB10 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=33.52 E-value=7.7 Score=13.96 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=11.2
Q ss_pred EECCCCC-CCCHHHHHHH
Q ss_conf 7136888-8789899898
Q gi|254780834|r 63 YCFSCHV-KGDHLSFLSA 79 (648)
Q Consensus 63 ~cf~c~~-~gd~~~f~~~ 79 (648)
.||+||+ =||.+..+++
T Consensus 6 RCFTCgkvi~~k~~~y~~ 23 (65)
T d1twfj_ 6 RCFSCGKVVGDKWESYLN 23 (65)
T ss_dssp BCTTTCCBCTTCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
T ss_conf 657897680787999999
No 39
>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.97 E-value=9.1 Score=13.33 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=32.1
Q ss_pred CHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEE-EEEECCC
Q ss_conf 438899987435542113432136626789885126818-9961788
Q gi|254780834|r 279 GYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRI-VLCFDGD 324 (648)
Q Consensus 279 Gy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~v-vl~fDgD 324 (648)
+-.|||.....-+--.+++.|-+||++.++.+...++++ ||.+=+=
T Consensus 97 ~L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLSNP 143 (294)
T d1pj3a1 97 TFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNP 143 (294)
T ss_dssp SHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCCC
T ss_conf 79999974277659974588886899999998731888379873588
No 40
>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}
Probab=32.38 E-value=9.2 Score=13.25 Aligned_cols=71 Identities=10% Similarity=0.179 Sum_probs=45.2
Q ss_pred CCCCCHHHHHCCCCHHHHHHH-HHCCC-EEEEEE--------CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf 554211343213662678988-51268-189961--------78866225777888888777536973067525788888
Q gi|254780834|r 290 GVQNVVSSLGTALTEYQLRLL-WKLSP-RIVLCF--------DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 (648)
Q Consensus 290 G~~n~va~~Gtalt~~~~~~l-~r~~~-~vvl~f--------DgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DP 359 (648)
+++.+....+--++..++..+ ..|.+ .+++.. ||=+||-+|..-|+|-+. .|.+.
T Consensus 203 ~~k~~~Pv~sGG~~~~~vp~~~~~~G~~Dvil~aGGGi~gHP~G~~aGa~A~rqA~ea~~---------------~g~~l 267 (283)
T d1ykwa1 203 RIKPCLPVPGGSDSALTLQTVYEKVGNVDFGFVPGRGVFGHPMGPKAGAKSIRQAWEAIE---------------QGISI 267 (283)
T ss_dssp TCCCCEEEEECSBCTTTHHHHHHHHCSSCSEECBSSSSSSCTTCHHHHHHHHHHHHHHHH---------------TTCCH
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH---------------CCCCH
T ss_conf 458852554688644265899985288508995586420699863878999999999998---------------29998
Q ss_pred HHHHHCCCHHHHHHHHHH
Q ss_conf 899720366889988641
Q gi|254780834|r 360 DSFIRCYGKTAFEKLIVE 377 (648)
Q Consensus 360 De~ir~~G~eaf~~ll~~ 377 (648)
++|.+.+ .+|...|++
T Consensus 268 ~e~ak~~--~EL~~Alek 283 (283)
T d1ykwa1 268 ETWAETH--PELQAMVDQ 283 (283)
T ss_dssp HHHHTTC--HHHHHHHHC
T ss_pred HHHHHCC--HHHHHHHCC
T ss_conf 9997449--899998529
No 41
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.33 E-value=9.2 Score=13.24 Aligned_cols=30 Identities=20% Similarity=0.594 Sum_probs=21.8
Q ss_pred EEEECCCCCCCCCCEE----EECCCCEEEECCCCCC
Q ss_conf 5753458888587879----8178974671368888
Q gi|254780834|r 39 YWACCPFHDEKTPSFH----CNDSKGFYYCFSCHVK 70 (648)
Q Consensus 39 ~~~~cPfh~ektpsf~----v~~~~~~~~cf~c~~~ 70 (648)
|+ ||..+-+=-++- ++|.++.|+|.-|+.-
T Consensus 15 y~--Cp~C~~~ys~Lda~~L~d~~~~~F~C~~C~~e 48 (62)
T d1vd4a_ 15 FK--CPVCSSTFTDLEANQLFDPMTGTFRCTFCHTE 48 (62)
T ss_dssp EE--CSSSCCEEEHHHHHHHEETTTTEEBCSSSCCB
T ss_pred EE--CCCCCCCCCHHHHHHHCCCCCCEEEECCCCCE
T ss_conf 18--89988880554387736967893973588999
No 42
>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=32.29 E-value=9.3 Score=13.24 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=28.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCC
Q ss_conf 8189961788662257778888887775369730675257888888997203
Q gi|254780834|r 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 (648)
Q Consensus 315 ~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~ 366 (648)
+.+.++|=|| |.+-+.++.=.++. .-|++++++. |+|..|++-+.+.
T Consensus 4 ~~lkia~vGD--~~nnV~~Sli~~~~--~~G~~l~l~~-P~~~~~~~~~~~~ 50 (185)
T d1dxha2 4 HDISYAYLGD--ARNNMGNSLLLIGA--KLGMDVRIAA-PKALWPHDEFVAQ 50 (185)
T ss_dssp GGCEEEEESC--CSSHHHHHHHHHHH--HTTCEEEEEC-CGGGSCCHHHHHH
T ss_pred CCCEEEEECC--CCCHHHHHHHHHHH--HCCCEEEEEC-CHHHHHHHHHHHH
T ss_conf 8888999867--84559999999999--8599799986-6798751378999
No 43
>d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=31.41 E-value=9.5 Score=13.12 Aligned_cols=11 Identities=36% Similarity=0.419 Sum_probs=7.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 79999999998
Q gi|254780834|r 482 LREAALLLTLI 492 (648)
Q Consensus 482 ~~E~~LL~llI 492 (648)
..|..||..|-
T Consensus 476 yTeatLi~~ME 486 (591)
T d1mw9x_ 476 FSEASLVKELE 486 (591)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 89999999998
No 44
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.07 E-value=9.7 Score=13.04 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=27.1
Q ss_pred CCCCEEEECCCCCCC-CHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 789746713688887-89899898859997999999999
Q gi|254780834|r 57 DSKGFYYCFSCHVKG-DHLSFLSALLGCSFIESVQRLAA 94 (648)
Q Consensus 57 ~~~~~~~cf~c~~~g-d~~~f~~~~~~~~f~ea~~~la~ 94 (648)
|..|-|||.-|++.- +.-.|..+...-....+|+.|-.
T Consensus 11 pG~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~ 49 (67)
T d1zr9a1 11 PGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV 49 (67)
T ss_dssp GGGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred CCCCEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCC
T ss_conf 999878613021836989999999710089999999612
No 45
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}
Probab=29.64 E-value=6.3 Score=14.79 Aligned_cols=11 Identities=27% Similarity=0.761 Sum_probs=7.2
Q ss_pred EECCCCEEEEE
Q ss_conf 70778588850
Q gi|254780834|r 211 RSSRGQVIAFG 221 (648)
Q Consensus 211 ~~~~g~~i~f~ 221 (648)
+|.+|+|||+|
T Consensus 45 yD~~G~ivG~G 55 (60)
T d1s6la1 45 YDKDGNIIGYG 55 (60)
T ss_dssp EETTTEECCCC
T ss_pred ECCCCCEEEEE
T ss_conf 66899788553
No 46
>d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId: 11034]}
Probab=29.62 E-value=10 Score=12.89 Aligned_cols=12 Identities=42% Similarity=0.808 Sum_probs=9.5
Q ss_pred EEEECCCCEEEE
Q ss_conf 897077858885
Q gi|254780834|r 209 PIRSSRGQVIAF 220 (648)
Q Consensus 209 Pi~~~~g~~i~f 220 (648)
||.|-+|||||.
T Consensus 106 pi~DN~GrVVaI 117 (152)
T d1wyka_ 106 PIMDNSGRVVAI 117 (152)
T ss_dssp EEECTTSCEEEE
T ss_pred CCCCCCCCEEEE
T ss_conf 127688869999
No 47
>d1pi1a_ a.29.7.1 (A:) Mob1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.03 E-value=10 Score=12.81 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHCCCHHHHHHH
Q ss_conf 67525788888899720366889988
Q gi|254780834|r 349 NFVLLSRGEDPDSFIRCYGKTAFEKL 374 (648)
Q Consensus 349 ~vv~LP~G~DPDe~ir~~G~eaf~~l 374 (648)
..|.||+|+|-+||+-.+-.+-|..+
T Consensus 12 ~~V~lP~g~d~neWlA~~~~dff~~i 37 (185)
T d1pi1a_ 12 QAVMLPEGEDLNEWIAVNTVDFFNQI 37 (185)
T ss_dssp HHTSCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99439299971122999899999999
No 48
>d3by8a1 d.110.6.1 (A:46-178) Fumarate sensor DcuS {Escherichia coli [TaxId: 562]}
Probab=28.68 E-value=10 Score=12.76 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.6
Q ss_pred EEEEEEEECCCCEEEEE
Q ss_conf 16888970778588850
Q gi|254780834|r 205 RLIFPIRSSRGQVIAFG 221 (648)
Q Consensus 205 Ri~fPi~~~~g~~i~f~ 221 (648)
|..-||+|..|++||.-
T Consensus 102 ~~~~Pv~~~~G~viGvV 118 (133)
T d3by8a1 102 RVFTPIYDENHKQIGVV 118 (133)
T ss_dssp EEEEEEECTTSCEEEEE
T ss_pred EEEEEEECCCCCEEEEE
T ss_conf 99973297899299999
No 49
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=28.29 E-value=10 Score=12.78 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=14.7
Q ss_pred EEEEEEEECCCCEEEEEC
Q ss_conf 168889707785888501
Q gi|254780834|r 205 RLIFPIRSSRGQVIAFGG 222 (648)
Q Consensus 205 Ri~fPi~~~~g~~i~f~g 222 (648)
--+.||+|..|++++|-|
T Consensus 82 ~~~~pi~d~~G~v~~~i~ 99 (104)
T d1jnua_ 82 FHLQVMRDENGDVQYFIG 99 (104)
T ss_dssp EEEEEECTTTSSCCEEEE
T ss_pred EEEEEEECCCCCEEEEEE
T ss_conf 788889999999999999
No 50
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=28.28 E-value=11 Score=12.71 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889999999999999858999999999999998724127989999999999999999999884132676
Q gi|254780834|r 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 (648)
Q Consensus 571 ~~d~~e~~~~~l~l~~r~~~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~~~Eal~e 639 (648)
.+.+.+...+.-.+......+..+.+.+.++|.. ...+...++..+..+++.++..++.+..-++
T Consensus 27 ld~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k----~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~ 91 (110)
T d1seta1 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPK----APPEEKEALIARGKALGEEAKRLEEALREKE 91 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999887----4132369999988889999999999999999
No 51
>d2hy5b1 c.114.1.1 (B:205-336) Intracellular sulfur oxidation protein DsrF {Chromatium vinosum [TaxId: 1049]}
Probab=28.18 E-value=11 Score=12.69 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=13.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 89961788662257778888887775369730675257
Q gi|254780834|r 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 (648)
Q Consensus 317 vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP 354 (648)
+.+.+.+-.=|-..+..|+++++.....|.+|.|.+.-
T Consensus 4 ~l~ii~~aPy~s~~a~~al~~A~aa~~~~~~v~vff~~ 41 (132)
T d2hy5b1 4 FMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLD 41 (132)
T ss_dssp EEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEECG
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 99996689998679999999999997079977999954
No 52
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=28.10 E-value=11 Score=12.68 Aligned_cols=49 Identities=27% Similarity=0.360 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999998188587768203677788999999999999999997326
Q gi|254780834|r 86 IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKN 134 (648)
Q Consensus 86 ~ea~~~la~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (648)
.|.|+..|+..||.--..+....-.+.-.-++-++.+.|.+|.++.-++
T Consensus 9 ~esik~iAeS~Gi~~l~de~a~~LA~DveYRl~eiiQeA~KFMrhskR~ 57 (70)
T d1tafb_ 9 AESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQ 57 (70)
T ss_dssp HHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8899999998598888999999999999999999999999999975657
No 53
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 573]}
Probab=27.68 E-value=11 Score=12.62 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=14.2
Q ss_pred EEEEEEEECCCCEEEEE
Q ss_conf 16888970778588850
Q gi|254780834|r 205 RLIFPIRSSRGQVIAFG 221 (648)
Q Consensus 205 Ri~fPi~~~~g~~i~f~ 221 (648)
|..-||+|..|++||.-
T Consensus 103 ~~~~PI~~~~G~viGvV 119 (131)
T d1p0za_ 103 RGKSPIQDATGKVIGIV 119 (131)
T ss_dssp EEEEEEECTTCCEEEEE
T ss_pred EEEEEEECCCCCEEEEE
T ss_conf 99998897899699999
No 54
>d1ep5a_ b.47.1.3 (A:) Viral capsid protein {Venezuelan equine encephalitis virus [TaxId: 11036]}
Probab=27.61 E-value=11 Score=12.62 Aligned_cols=11 Identities=45% Similarity=0.887 Sum_probs=6.7
Q ss_pred EEEECCCCEEE
Q ss_conf 89707785888
Q gi|254780834|r 209 PIRSSRGQVIA 219 (648)
Q Consensus 209 Pi~~~~g~~i~ 219 (648)
||.|-+|||||
T Consensus 110 pi~DN~GkVVa 120 (156)
T d1ep5a_ 110 PILDNQGRVVA 120 (156)
T ss_dssp EEECTTSCEEE
T ss_pred CCCCCCCCEEE
T ss_conf 11768886999
No 55
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}
Probab=27.47 E-value=9.4 Score=13.17 Aligned_cols=17 Identities=12% Similarity=0.387 Sum_probs=9.8
Q ss_pred CCCCCCEEEEEEEECCC
Q ss_conf 00016716888970778
Q gi|254780834|r 199 YDRFRNRLIFPIRSSRG 215 (648)
Q Consensus 199 ~d~Fr~Ri~fPi~~~~g 215 (648)
...|++-+.+.+....+
T Consensus 175 ~~~~~d~~~~~~~~~~~ 191 (331)
T d1gtra2 175 FIVMRDPVLYRIKFAEH 191 (331)
T ss_dssp SGGGSSCEEEEECCCCB
T ss_pred CEEEECCCEEEECCCCC
T ss_conf 60577662122105787
No 56
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]}
Probab=27.27 E-value=11 Score=12.57 Aligned_cols=16 Identities=6% Similarity=0.247 Sum_probs=7.4
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 3799889999999999
Q gi|254780834|r 509 RYDNNELQKLWSFLFS 524 (648)
Q Consensus 509 ~f~~~~~~~L~~~i~~ 524 (648)
.+.+|.++.+......
T Consensus 196 v~~~~~~~~l~~~~~~ 211 (311)
T d1ps1a_ 196 VFDSAVMSAMLQIAVD 211 (311)
T ss_dssp HHTSHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHH
T ss_conf 9960113999999999
No 57
>d1vcpa_ b.47.1.3 (A:) Viral capsid protein {Semliki forest virus [TaxId: 11033]}
Probab=27.23 E-value=11 Score=12.56 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=9.5
Q ss_pred EEEECCCCEEEE
Q ss_conf 897077858885
Q gi|254780834|r 209 PIRSSRGQVIAF 220 (648)
Q Consensus 209 Pi~~~~g~~i~f 220 (648)
||.|-+|||||.
T Consensus 104 pi~DN~GkVVaI 115 (149)
T d1vcpa_ 104 PIFDNKGRVVAI 115 (149)
T ss_dssp EEECTTSCEEEE
T ss_pred CCCCCCCCEEEE
T ss_conf 117688879999
No 58
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}
Probab=26.92 E-value=11 Score=12.52 Aligned_cols=69 Identities=20% Similarity=0.193 Sum_probs=41.5
Q ss_pred HHHHHH-HHHC-CCCCCHHHHHCCCCHHHHHHHHHC-CCEEEEEECCCCCCHHH-----------HHHHHHHHHHHHHCC
Q ss_conf 388999-8743-554211343213662678988512-68189961788662257-----------778888887775369
Q gi|254780834|r 280 YMDVLS-LCQA-GVQNVVSSLGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRA-----------AYKAIDLVLCHLIPG 345 (648)
Q Consensus 280 y~Dvi~-l~~~-G~~n~va~~Gtalt~~~~~~l~r~-~~~vvl~fDgD~AG~kA-----------a~Ra~e~~l~~l~~g 345 (648)
.++.+. +.+. ++...+.|-|+.++++.+..|... ...|.+.+||..+-... +.+++++ +.+.|
T Consensus 81 ~~e~i~~~~~~~~~~~~~~Tng~ll~~~~~~~l~~~g~~~i~iSldg~~~e~~~~~rg~~g~~~~~~~~~~~---~~~~g 157 (327)
T d1tv8a_ 81 LDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDY---ATSIG 157 (327)
T ss_dssp HHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHH---HHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHEEECCCCCHHHHHHHH---HHHCC
T ss_conf 799999875421222013444311120679999983998786202568787764510203542112368999---99859
Q ss_pred CCEEEE
Q ss_conf 730675
Q gi|254780834|r 346 NRVNFV 351 (648)
Q Consensus 346 ~~v~vv 351 (648)
..+.+.
T Consensus 158 ~~~~~~ 163 (327)
T d1tv8a_ 158 LNVKVN 163 (327)
T ss_dssp CEEEEE
T ss_pred CCCCEE
T ss_conf 986325
No 59
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.96 E-value=11 Score=12.38 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=17.0
Q ss_pred CCCEEEEEEEECCCCEEEEECCC
Q ss_conf 16716888970778588850100
Q gi|254780834|r 202 FRNRLIFPIRSSRGQVIAFGGRT 224 (648)
Q Consensus 202 Fr~Ri~fPi~~~~g~~i~f~gR~ 224 (648)
+-.--+-||+|..|++++|-+=.
T Consensus 82 w~~~~~~pi~d~~G~v~~~i~~~ 104 (110)
T d1bywa_ 82 LCLVDVVPVKNEDGAVIMFILNF 104 (110)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEE
T ss_pred EEEEEEEEEECCCCCEEEEEEEE
T ss_conf 12336778998999999999999
No 60
>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli [TaxId: 562]}
Probab=25.47 E-value=12 Score=12.31 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 37999999999847
Q gi|254780834|r 481 SLREAALLLTLINH 494 (648)
Q Consensus 481 ~~~E~~LL~llI~~ 494 (648)
...|..|+..|-+-
T Consensus 490 ryTEasLi~~Me~~ 503 (620)
T d1i7da_ 490 HFTDATLLSAMTGI 503 (620)
T ss_dssp CEEHHHHHHHHHTG
T ss_pred CCCHHHHHHHHHHH
T ss_conf 98879999999863
No 61
>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.02 E-value=12 Score=12.25 Aligned_cols=54 Identities=22% Similarity=0.339 Sum_probs=33.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC--CEEEEECCCCCCHHHHHHCCCHH
Q ss_conf 81899617886622577788888877753697--30675257888888997203668
Q gi|254780834|r 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN--RVNFVLLSRGEDPDSFIRCYGKT 369 (648)
Q Consensus 315 ~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~--~v~vv~LP~G~DPDe~ir~~G~e 369 (648)
+.|+++ =|-.|...--.+|.+++..+.+... ...|..+.+|..|++|.+..|..
T Consensus 47 ~~iyvW-~G~~ss~~ek~~a~~~a~~~~~~~~~~~~~v~~v~eG~E~~~F~~~lGg~ 102 (116)
T d1j72a2 47 QNIFAW-CGGKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEMIQVLGPK 102 (116)
T ss_dssp TEEEEE-ECTTCCHHHHHHHHHHHHHHHTTSCCSSCEEEEEETTCCCHHHHHHHCSC
T ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHCCC
T ss_conf 978999-78989999999999999999860679998488998998929999983997
No 62
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=24.39 E-value=12 Score=12.15 Aligned_cols=62 Identities=11% Similarity=0.122 Sum_probs=40.7
Q ss_pred HHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 899987435542113432136626789885126818996178866225777888888777536973
Q gi|254780834|r 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 (648)
Q Consensus 282 Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~ 347 (648)
+++......+..+|--++..++......+. .++.|++..+.|..+...+.|.+..+. +.+..
T Consensus 101 ~~l~~l~~~~D~viiD~~~~~~~~~~~~l~-~ad~v~~v~~~~~~~~~~~~~~~~~~~---~~~~~ 162 (232)
T d1hyqa_ 101 DVLTQIMESTDILLLDAPAGLERSAVIAIA-AAQELLLVVNPEISSITDGLKTKIVAE---RLGTK 162 (232)
T ss_dssp HHHHHHHHTCSEEEEECCSSSSHHHHHHHH-HSSEEEEEECSSHHHHHHHHHHHHHHH---HHTCE
T ss_pred HHHHHHHHCCCEEEECCCCCCCCHHHHHHH-HHHEEEEECCCCCCCHHHHHHHHHHHH---HCCCC
T ss_conf 888877523643530332222202577765-423032202222110245666666543---10111
No 63
>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.68 E-value=6.9 Score=14.42 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=21.7
Q ss_pred EECCCCCCCCCCEEEECCCCEEEECCCCCC
Q ss_conf 534588885878798178974671368888
Q gi|254780834|r 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 (648)
Q Consensus 41 ~~cPfh~ektpsf~v~~~~~~~~cf~c~~~ 70 (648)
..|..|. |.|++.|.-..+-| |.-|+.-
T Consensus 24 rvCe~H~-ka~~V~v~G~~~Rf-CQqC~rF 51 (81)
T d1ul4a_ 24 KVCEVHA-KASSVFLSGLNQRF-CQQCSRF 51 (81)
T ss_dssp TCCHHHH-TCSCEEETTEEEEE-CTTTSSE
T ss_pred HHHHHHC-CCCEEEECCEECHH-HHHHCCC
T ss_conf 8999874-99848899961268-7773665
No 64
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.34 E-value=13 Score=12.00 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999872412798999999999999999999988
Q gi|254780834|r 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 (648)
Q Consensus 590 ~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~ 632 (648)
.|-.++..++.-|.++...+.-|...-|-.-|++++.++.+.+
T Consensus 3 PllqQi~~ik~yI~QAk~a~R~dEV~~Le~NLreLq~e~~~qq 45 (46)
T d1yzma1 3 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 0899999999999999982451899999999999999998634
No 65
>d1chka_ d.2.1.7 (A:) Endochitosanase {Streptomyces sp., strain N174 [TaxId: 1931]}
Probab=22.98 E-value=13 Score=11.94 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=9.4
Q ss_pred EEECC-CCCCCCHHHHHHHH
Q ss_conf 67136-88887898998988
Q gi|254780834|r 62 YYCFS-CHVKGDHLSFLSAL 80 (648)
Q Consensus 62 ~~cf~-c~~~gd~~~f~~~~ 80 (648)
|=|+| |-.+||...+|+.+
T Consensus 46 ~G~~g~tsgtGdl~~lv~~Y 65 (238)
T d1chka_ 46 GGIIGFCSGTGDMLELVQHY 65 (238)
T ss_dssp ETTTTEETTTSHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHH
T ss_conf 66556438999899999999
No 66
>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=22.34 E-value=13 Score=11.84 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=8.0
Q ss_pred EEEE--EEECCCCEEEEEC
Q ss_conf 6888--9707785888501
Q gi|254780834|r 206 LIFP--IRSSRGQVIAFGG 222 (648)
Q Consensus 206 i~fP--i~~~~g~~i~f~g 222 (648)
|+.| -+|.+|.=+|+||
T Consensus 102 iivP~lafD~~G~RLGyGg 120 (164)
T d1sbqa_ 102 FLIPLVGFNKDNYRLGFGK 120 (164)
T ss_dssp EEEECSEECTTCCEECCSS
T ss_pred EEEEEHEEEEECCCCCCCC
T ss_conf 9950122564147651465
No 67
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}
Probab=22.20 E-value=13 Score=11.82 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=20.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 8189961788662257778888887775369730675257888
Q gi|254780834|r 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 (648)
Q Consensus 315 ~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~ 357 (648)
+..|++|| |..|..+|-|+.-++..+ |.+|++ |..|.
T Consensus 89 ~~~VVvYd-~~~g~~~A~R~~w~L~~~---G~~v~i--LdGG~ 125 (156)
T d1okga1 89 ELPVLCYD-DECGAMGGCRLWWMLNSL---GADAYV--INGGF 125 (156)
T ss_dssp SSCEEEEC-SSTTTTTHHHHHHHHHHH---TCCEEE--ETTTT
T ss_pred CCEEEEEE-CCCCCHHHHHHHHHHHHC---CCEEEE--ECCCH
T ss_conf 72499980-788830878999999983---984699--67989
No 68
>d2essa1 d.38.1.8 (A:1-149) Acyl-ACP thioesterase {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=21.46 E-value=14 Score=11.70 Aligned_cols=74 Identities=11% Similarity=0.039 Sum_probs=47.7
Q ss_pred HHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEE
Q ss_conf 89999850688535101244225677410345542059973452320121003465410000167168889707785888
Q gi|254780834|r 140 LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219 (648)
Q Consensus 140 a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~ 219 (648)
+-.++...|++-+.+.+.++||.--..+ ++|...-.+.+...+.+.+...+. .+-+.-|=|+|..|++++
T Consensus 38 ~~~~~~~~G~~~~~l~~~g~~~vv~~~~--i~y~~~~~~gd~v~V~t~~~~~~~--------~~~~~~~~i~~~~g~~ia 107 (149)
T d2essa1 38 AGFHASDRGFGIATLNEDNYTWVLSRLA--IELDEMPYQYEKFSVQTWVENVYR--------LFTDRNFAVIDKDGKKIG 107 (149)
T ss_dssp HHHHHHHTTCSHHHHHHTTEEEEEEEEE--EEESCCCBTTCEEEEEEEEEEECS--------SEEEEEEEEECTTSCEEE
T ss_pred HHHHHHHCCCCHHHHHCCCCEEEEEEEE--EEEEECCCCCCEEEEEEEEEEECC--------CEEEEEEEEEECCCCEEE
T ss_conf 9999998185366674067447999999--998003524866667887765056--------168999999706996788
Q ss_pred EECCC
Q ss_conf 50100
Q gi|254780834|r 220 FGGRT 224 (648)
Q Consensus 220 f~gR~ 224 (648)
- |++
T Consensus 108 ~-a~~ 111 (149)
T d2essa1 108 Y-ARS 111 (149)
T ss_dssp E-EEE
T ss_pred E-EEE
T ss_conf 8-889
No 69
>d1ev0a_ d.71.1.1 (A:) Cell division protein MinE topological specificity domain {Escherichia coli [TaxId: 562]}
Probab=21.43 E-value=11 Score=12.48 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=13.1
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCE
Q ss_conf 889999987488888754122210
Q gi|254780834|r 5 RDFIKDLLIHIPISNLIGQYVDWD 28 (648)
Q Consensus 5 ~~~i~~i~~~~~i~~vv~~~v~l~ 28 (648)
++++-.++. +|.+||+.||+..
T Consensus 6 PDyLp~Lq~--eil~VI~KyV~Id 27 (58)
T d1ev0a_ 6 PHYLPQLRK--DILEVICKYVQID 27 (58)
T ss_dssp TSSHHHHHH--HHHHHHHHHSCCC
T ss_pred CCHHHHHHH--HHHHHHHHHEEEC
T ss_conf 621899999--9999998747506
No 70
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}
Probab=21.39 E-value=14 Score=11.69 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=31.2
Q ss_pred HHHCCCCCCHHHHHC---CCCHHHHHHHHHCCCEEEEEECCCCCCHHHH--HHHHHHHHHHHHCCCC
Q ss_conf 874355421134321---3662678988512681899617886622577--7888888777536973
Q gi|254780834|r 286 LCQAGVQNVVSSLGT---ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAA--YKAIDLVLCHLIPGNR 347 (648)
Q Consensus 286 l~~~G~~n~va~~Gt---alt~~~~~~l~r~~~~vvl~fDgD~AG~kAa--~Ra~e~~l~~l~~g~~ 347 (648)
+..+|...+--+-|- .-|.++++++++.+ ++..|.||+ .|..+.++.++..|.+
T Consensus 141 a~~aGadfiKTSTG~~~~gat~e~v~~m~~~~--------~~~~~iKasGGIrt~~~a~~~i~~Ga~ 199 (225)
T d1mzha_ 141 CIEAGADFIKTSTGFAPRGTTLEEVRLIKSSA--------KGRIKVKASGGIRDLETAISMIEAGAD 199 (225)
T ss_dssp HHHHTCSEEECCCSCSSSCCCHHHHHHHHHHH--------TTSSEEEEESSCCSHHHHHHHHHTTCS
T ss_pred HHHCCCCEEEECCCCCCCCCCHHHHHHHHHHH--------CCCCEEECCCCCCCHHHHHHHHHHCHH
T ss_conf 99804351764688788988899999999985--------878448771798999999999984526
No 71
>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}
Probab=20.79 E-value=14 Score=11.60 Aligned_cols=98 Identities=11% Similarity=0.133 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC--HHHHHHHH-HCC----C--CCCHHHHHCCCCHHHHHHHHHCCCEEE
Q ss_conf 10817888864331000023567870899714--38899987-435----5--421134321366267898851268189
Q gi|254780834|r 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEG--YMDVLSLC-QAG----V--QNVVSSLGTALTEYQLRLLWKLSPRIV 318 (648)
Q Consensus 248 Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEG--y~Dvi~l~-~~G----~--~n~va~~Gtalt~~~~~~l~r~~~~vv 318 (648)
+.+...+...++...+. ..+.+++.+| .++....+ ..- + ...-++||.++.-.-...+. .++.+
T Consensus 5 ~~~~~~~~~~l~~~~~~-----~~D~iiv~dgg~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~~aig~~a~--~~~~v 77 (183)
T d2ji7a3 5 MMNYSNSLGVVRDFMLA-----NPDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAV--TGKPV 77 (183)
T ss_dssp CBCHHHHHHHHHHHHHH-----CCSSEEEEESSHHHHHHHHHSCCCSTTCEEECTTTTCTTCHHHHHHHHHHH--HCSCE
T ss_pred CCCHHHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHCC--CCCEE
T ss_conf 58999999999998752-----989899999632899999983147999388668766555034422353217--76239
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 96178866225777888888777536973067525788
Q gi|254780834|r 319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 (648)
Q Consensus 319 l~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G 356 (648)
+|+.||-+=.-. .-.+.. ..+.+..+.++.+-++
T Consensus 78 v~i~GDGsf~~~-~~el~t---a~~~~l~i~iiV~NN~ 111 (183)
T d2ji7a3 78 IAVEGDSAFGFS-GMELET---ICRYNLPVTVIIMNNG 111 (183)
T ss_dssp EEEEEHHHHHTT-GGGHHH---HHHTTCCEEEEEEECS
T ss_pred EEEECCCCHHHC-HHHHHH---HHHCCCCCHHHHHHHH
T ss_conf 999758404311-036666---6420432110244544
No 72
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
Probab=20.74 E-value=14 Score=11.59 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=7.2
Q ss_pred CCCCCCHHHHHCC
Q ss_conf 3554211343213
Q gi|254780834|r 289 AGVQNVVSSLGTA 301 (648)
Q Consensus 289 ~G~~n~va~~Gta 301 (648)
.|-...|++||.-
T Consensus 254 ~~~~~~~~~m~cR 266 (561)
T d1hk8a_ 254 TGSSVPVSPMGCR 266 (561)
T ss_dssp HTCSSCCCCBTTT
T ss_pred CCCCCCCCCCCCH
T ss_conf 3788643467626
No 73
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=20.62 E-value=14 Score=11.57 Aligned_cols=62 Identities=19% Similarity=0.117 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
Q ss_conf 99999999981885877682036777889999999999999999973267775789999850
Q gi|254780834|r 86 IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDER 147 (648)
Q Consensus 86 ~ea~~~la~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~R 147 (648)
..+++.||.++|++--..+....-...-...+-++...|..|..+.=+.+-.+.-..|.-+|
T Consensus 12 k~~i~Riar~~Gv~ris~d~~~~l~~~l~~~l~~i~~~a~~~~~hakRKTvt~~DV~~Alkr 73 (82)
T d2huec1 12 KPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 73 (82)
T ss_dssp HHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999999976954132999999999999999999999999987718875879999999996
No 74
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=20.60 E-value=14 Score=11.56 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=34.1
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHH
Q ss_conf 9999853023314579999999998854179-----989999999999999887
Q gi|254780834|r 386 WKRETENRSFNTPDERAELEIHLKNCINHIK-----DQKLRYYYSQAIRDRLQQ 434 (648)
Q Consensus 386 ~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~-----d~~~R~~yl~~la~~L~~ 434 (648)
+..+....++.+++.+..|..+++.++..|| |+-.|.-.++.+-+.+..
T Consensus 25 I~~i~~~~~l~~~e~~I~F~~El~~l~R~iP~~~f~d~e~R~~lL~a~Q~ALD~ 78 (91)
T d1xl3c1 25 IEHLANAFSLPTPEIKVRFYQDLKRMFRLFPLGVFSDEEQRQNLLQMCQNAIDM 78 (91)
T ss_dssp HHHHHHTTCCSSHHHHHHHHHHHHHHHHTSCGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 999998717974789989999999999978888558989999999999999999
No 75
>d1nx4a_ b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia carotovora [TaxId: 554]}
Probab=20.35 E-value=11 Score=12.62 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=8.3
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999999818858
Q gi|254780834|r 87 ESVQRLAAIAGVPL 100 (648)
Q Consensus 87 ea~~~la~~~gi~~ 100 (648)
++++.+-.+.|+-+
T Consensus 29 ~~i~~~l~~~G~vv 42 (271)
T d1nx4a_ 29 ETIKNLLMRQGFVV 42 (271)
T ss_dssp HHHHHHHHHHCEEE
T ss_pred HHHHHHHHHCCEEE
T ss_conf 99999999749999
No 76
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.15 E-value=14 Score=11.49 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8189961788662257778888887
Q gi|254780834|r 315 PRIVLCFDGDDPGLRAAYKAIDLVL 339 (648)
Q Consensus 315 ~~vvl~fDgD~AG~kAa~Ra~e~~l 339 (648)
++|.++.|+.+..++|...|++++.
T Consensus 6 k~ILv~vD~s~~s~~al~~A~~la~ 30 (147)
T d1tq8a_ 6 KTVVVGTDGSDSSMRAVDRAAQIAG 30 (147)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 9799998899899999999999986
Done!