PSIBLAST alignment of GI: 254780834 and protein with PDB id: 3b39
>gi|165761277|pdb|3B39|A Chain A, Structure Of The Dnag Primase Catalytic Domain Bound To Ssdna Length = 322
>gi|165761278|pdb|3B39|B Chain B, Structure Of The Dnag Primase Catalytic Domain Bound To Ssdna Length = 322
Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats.
Identities = 111/330 (33%), Positives = 181/330 (54%), Gaps = 12/330 (3%)
Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172
+ L +L++ F+ SL+ YL++RG+ I F +G+AP ++ +
Sbjct: 5 QRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKR 64
Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232
+ + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ K
Sbjct: 65 FGGNPENRQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPK 122
Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292
YLNSPET +FHKG+ LY + A + R +++VEGYMDV++L Q G+
Sbjct: 123 YLNSPETDIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGIN 172
Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352
V+SLGT+ T ++LL++ + ++ C+DGD G AA+ A++ L ++ G ++ F+
Sbjct: 173 YAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWCALETALPYMTDGRQLRFMF 232
Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412
L GEDPD+ +R GK AFE + +++PL L+ +TPD RA L I
Sbjct: 233 LPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLI 292
Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442
+ + + LR Y Q + ++L L +
Sbjct: 293 SQVPGETLRIYLRQELGNKLGILDDSQLER 322