RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus
Liberibacter asiaticus str. psy62]
         (648 letters)



>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding
           protein, RNA polymerase, replication protein; HET: DNA;
           1.60A {Escherichia coli} (A:1-145)
          Length = 145

 Score =  152 bits (386), Expect = 1e-37
 Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 4/149 (2%)

Query: 95  IAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAI 154
           + G                +  L +L++    F+  SL+         YL++RG+    I
Sbjct: 1   MRGSHHH--HHHGSGSMHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVI 58

Query: 155 EMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR 214
             F +G+AP    ++ +       + + +I+AG+L+  D    SYDRFR R++FPIR  R
Sbjct: 59  ARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQG-RSYDRFRERVMFPIRDKR 117

Query: 215 GQVIAFGGRTLSKGESVKYLNSPETILFH 243
           G+VI FGGR L      KYLNSPET +FH
Sbjct: 118 GRVIGFGGRVLGNDTP-KYLNSPETDIFH 145


>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA
           replication, transferase; HET: DNA; 2.00A {Aquifex
           aeolicus} (A:96-224)
          Length = 129

 Score =  134 bits (338), Expect = 4e-32
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 6/135 (4%)

Query: 107 IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSR 166
           +EK  K +  +   ++   DF+  SL   R+     Y+  RGID      F LGYAP S 
Sbjct: 1   LEKISKDEK-VYVALDRVCDFYRESLLKNREAS--EYVKSRGIDPKVARKFDLGYAPSSE 57

Query: 167 YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
            +L + L++    E  +    LL          D F  R++ PI+  RG+VI FGGR + 
Sbjct: 58  -ALVKVLKENDLLEAYLETKNLLSPTKGV--YRDLFLRRVVIPIKDPRGRVIGFGGRRIV 114

Query: 227 KGESVKYLNSPETIL 241
           + +S KY+NSP++ +
Sbjct: 115 EDKSPKYINSPDSRV 129


>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding
           protein, RNA polymerase, replication protein; HET: DNA;
           1.60A {Escherichia coli} (A:146-285)
          Length = 140

 Score =  126 bits (318), Expect = 7e-30
 Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 10/148 (6%)

Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
           KG+ LY  + A     +  R          +++VEGYMDV++L Q G+   V+SLGT+ T
Sbjct: 1   KGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLGTSTT 50

Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
              ++LL++ +  ++ C+DGD  G  AA++A++  L ++  G ++ F+ L  GEDPD+ +
Sbjct: 51  ADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLV 110

Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETE 391
           R  GK AFE  + +++PL   L+     
Sbjct: 111 RKEGKEAFEARMEQAMPLSAFLFNSLMP 138


>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA
           replication, transferase; HET: DNA; 2.00A {Aquifex
           aeolicus} (A:225-349)
          Length = 125

 Score =  117 bits (295), Expect = 3e-27
 Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 13/137 (9%)

Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
           F KG+NL+  + A  Y+++              ILVEGY D+L L   G++NVV+ LGTA
Sbjct: 1   FKKGENLFGLYEAKEYIKEEGF----------AILVEGYFDLLRLFSEGIRNVVAPLGTA 50

Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
           LT+ Q  LL K + ++ + +DGDD G +A   AI L+L     G  V  V L  G DPD 
Sbjct: 51  LTQNQANLLSKFTKKVYILYDGDDAGRKAMKSAIPLLLSA---GVEVYPVYLPEGYDPDE 107

Query: 362 FIRCYGKTAFEKLIVES 378
           FI+ +GK    +LI  S
Sbjct: 108 FIKEFGKEELRRLINSS 124


>1t6t_1 Putative protein; structural genomics, PSI, protein
           structure initiative, midwest center for structural
           genomics, MCSG, unknown function; 1.80A {Aquifex
           aeolicus VF5} (1:)
          Length = 118

 Score =  109 bits (275), Expect = 7e-25
 Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 23/135 (17%)

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
           K   N             K++++ S   +ILVEG  D  +L +  ++NV+   G    + 
Sbjct: 3   KEPRNLSEW--------IKELKKASREAVILVEGKNDKKALSKFSIKNVIDLSGKRYADV 54

Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
              L  K   +++L FD D  G R   K  +L              L S+G   D   R 
Sbjct: 55  VDXLEGKW-EKVILLFDLDTHGERINQKXKEL--------------LSSQGFLVDENFRN 99

Query: 366 YGKTAFEKLIVESLP 380
           + K      I E   
Sbjct: 100 FLKKWNIIHIEEING 114


>2fcj_A Small toprim domain protein; structural genomics, PSI,
           protein structure initiative, midwest center for
           structural genomics, MCSG; HET: MES; 1.30A {Geobacillus
           stearothermophilus} (A:)
          Length = 119

 Score = 98.0 bits (244), Expect = 3e-21
 Identities = 14/119 (11%), Positives = 33/119 (27%), Gaps = 19/119 (15%)

Query: 274 IILVEGYMDVLSLCQAGVQNVVSSL-GTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRA 330
           +I+VEG  D   +     + VV       +++ +L  L        + L  D D+ G + 
Sbjct: 7   VIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKL 66

Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRG---------EDPDSFIRCYGKTAFEKLIVESLP 380
             +    +            + + R                +         + ++    
Sbjct: 67  R-RQFRRMFPE------AEHLYIDRAYREVAAAPIWHLAQVLLRARFDVRIESLMRGRG 118


>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase;
           HET: DNA; 3.45A {Enterobacteria phage T7} (A:75-203)
          Length = 129

 Score = 95.0 bits (236), Expect = 2e-20
 Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 26/143 (18%)

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS---SLGTAL 302
             L+                   N    I++ EG +D+L++ +             G + 
Sbjct: 2   DALFGKHLW--------------NGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASA 47

Query: 303 TEYQLRLLWKLSP---RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
            +      ++      +I+L FD D+ G +A  +A       ++P  +V   +L   +D 
Sbjct: 48  AKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQ-----VLPAGKVRVAVLP-CKDA 101

Query: 360 DSFIRCYGKTAFEKLIVESLPLV 382
           +            + +  + P +
Sbjct: 102 NECHLNGHDREIMEQVWNAGPWI 124


>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA
           replication, DNA- directed RNA polymerase, primosome,
           late protein; HET: DNA; 2.90A {Enterobacteria phage T7}
           (A:138-255)
          Length = 118

 Score = 90.4 bits (224), Expect = 6e-19
 Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 26/136 (19%)

Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV---SSLGTAL 302
             L+                   N    I++ EG +D+L++ +             G + 
Sbjct: 2   DALFGKHLW--------------NGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASA 47

Query: 303 TEYQLRLLWKLSP---RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
            +      ++      +I+L FD D+ G +A  +A       ++P  +V  V +   +D 
Sbjct: 48  AKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQ-----VLPAGKV-RVAVLPCKDA 101

Query: 360 DSFIRCYGKTAFEKLI 375
           +            + +
Sbjct: 102 NECHLNGHDREIMEQV 117


>1d0q_A DNA primase; zinc-binding motif, protein; HET: DNA; 1.71A
          {Bacillus stearothermophilus} (A:23-69)
          Length = 47

 Score = 85.0 bits (211), Expect = 3e-17
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 5/52 (9%)

Query: 21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72
          IG+YV   R+  N     Y+  CPFH EKTPSF  +  K  ++CF C   G+
Sbjct: 1  IGEYVQLKRQGRN-----YFGLCPFHGEKTPSFSVSPEKQIFHCFGCGAGGN 47


>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA
          replication, transferase; HET: DNA; 2.00A {Aquifex
          aeolicus} (A:20-66)
          Length = 47

 Score = 83.9 bits (208), Expect = 5e-17
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)

Query: 21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72
          I +Y++ ++  +N     Y   CPFH + TPSF+ + SK  + CF C V GD
Sbjct: 1  ISEYLNLEKVGSN-----YRTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGD 47


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 36.7 bits (84), Expect = 0.008
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 530 KYFLPEEIHQRLCERGFGELLKQL------DRQVRDAGLWSATTEANIVDVRQGY 578
           K F+ +E    L ++G G+   ++      + Q+    L+SAT    +    + +
Sbjct: 261 KVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQI---VLFSATFSERVEKYAERF 312



 Score = 35.1 bits (80), Expect = 0.026
 Identities = 16/149 (10%), Positives = 43/149 (28%), Gaps = 14/149 (9%)

Query: 100 LPVVDPKIEKKEKIQTDLIR-LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHA-IEMF 157
           L ++        K Q   +    E+A        +  +   +      +           
Sbjct: 177 LTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDA 236

Query: 158 KLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR---NRLIFPIRSSR 214
           ++         + + ++++      I    +L + DN             R+   +  + 
Sbjct: 237 QIVIGTPGT--VMDLMKRRQLDARDIKVF-VLDEADN-MLDQQGLGDQSMRIKHLLPRNT 292

Query: 215 GQVIAFGGRTLSKG-ESV--KYLNSPETI 240
            Q++ F   T S+  E    ++  +   I
Sbjct: 293 -QIVLFSA-TFSERVEKYAERFAPNANEI 319


>3hoa_A Thermostable carboxypeptidase 1; proline-rich loop,
           hydrolase; 2.10A {Thermus thermophilus HB27} PDB: 1wgz_A
           (A:1-100)
          Length = 100

 Score = 32.5 bits (74), Expect = 0.17
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 13/98 (13%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSD------------FVEQKYFLPEEIHQRLCERGF 546
           +  YQ L + + +   L  L +    D               Q   L   +HQR+ +   
Sbjct: 4   EAAYQNLLEFQRETAYLASLGALAAWDQRTMIPKKGHEHRARQMAALARLLHQRMTDPRI 63

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
           GE L++++          +    N+ + RQ Y++A A+
Sbjct: 64  GEWLEKVEGSPLVQDP-LSDAAVNVREWRQAYERARAI 100


>1d0q_A DNA primase; zinc-binding motif, protein; HET: DNA; 1.71A
           {Bacillus stearothermophilus} (A:1-22,A:70-103)
          Length = 56

 Score = 31.5 bits (71), Expect = 0.37
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 74  LSFLSALLGCSFIESVQRLAAIAGVPLPVVD 104
            +FL  + G  F+E+ +RLAA AGV L V +
Sbjct: 24  FTFLMDIEGIPFVEAAKRLAAKAGVDLSVYE 54


>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair,
           10123K, structural genomics, protein structure
           initiative; 2.35A {Lactobacillus reuteri 100-23}
           (A:1-107)
          Length = 107

 Score = 29.7 bits (67), Expect = 1.2
 Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 21/81 (25%)

Query: 106 KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
           ++ K  ++    I  I  A          A  + L Y                L Y   +
Sbjct: 39  RLMKGTELDEKQIAAIATADQQ-----AKAYSRMLDY----------------LSYQMRT 77

Query: 166 RYSLREHLRQKGFSEEKIIEA 186
              + + L++    EE +   
Sbjct: 78  ESDIVKKLKEIDTPEEFVEPI 98


>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens}
           (A:)
          Length = 150

 Score = 29.4 bits (65), Expect = 1.3
 Identities = 13/72 (18%), Positives = 19/72 (26%)

Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
                  +    +  S      L   F K   E +G   +W  N          +R   S
Sbjct: 77  FKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSWWMLNPEGGKSGKAPRRRAAS 136

Query: 470 SLVKGKLSKKPS 481
                KL +  S
Sbjct: 137 MDSSSKLLRGRS 148


>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor
           domain, ADP, NECK linker, motor protein; HET: ADP; 3.25A
           {Neurospora crassa} (A:)
          Length = 443

 Score = 29.1 bits (63), Expect = 1.7
 Identities = 17/133 (12%), Positives = 30/133 (22%), Gaps = 7/133 (5%)

Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
            +R  E  + N           L   I  + D K       +     +            
Sbjct: 313 GQRLREGSNINKS------LTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVP 366

Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS-LREAALLLTLINHPAILQEQYQE 504
           Y              G S+  M + +      +  S LR A     +     + Q     
Sbjct: 367 YRDSVLTWLLKDSLGGNSKTAMIACISPTDYDETLSTLRYADQAKRIRTRAVVNQVDGVS 426

Query: 505 LADIRYDNNELQK 517
            A+       +  
Sbjct: 427 AAERDAQIPSIVH 439


>3hq2_A Bacillus subtilis M32 carboxypeptidase; hydrolase,
           metal-binding, metalloprotease, protease, zinc; 2.90A
           {Bacillus subtilis} (A:1-157)
          Length = 157

 Score = 29.0 bits (65), Expect = 1.9
 Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 25/125 (20%)

Query: 499 QEQYQELADIRYDNNELQKLWSFLFSD------------FVEQKYFLPEEIHQRLCERGF 546
               +E  D+    +   +  + +  D              E    L  +I         
Sbjct: 4   HTYEKEFFDLLKRISHYSEAVALMHWDSRTGAPKNGSEDRAESIGQLSTDIFNIQTSDRM 63

Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
            EL+  L  +  D    S  T+  +   ++ Y++   +           E   K+   + 
Sbjct: 64  KELIDVLYERFDDL---SEDTKKAVELAKKEYEENKKI----------PEAEYKEYVILC 110

Query: 607 AKGEA 611
           +K E 
Sbjct: 111 SKAET 115


>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural
           genomics, protein structure initiative; 2.04A
           {Lactobacillus salivarius UCC118} (A:1-64)
          Length = 64

 Score = 28.8 bits (65), Expect = 2.1
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 159 LGYAPDSRYSLREHLRQKGFSEEKIIEA 186
           L Y   +R  + + LR     E+ I E 
Sbjct: 28  LSYQLRTRKEVEDKLRSLDIHEDYISEI 55


>3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of
           metallocarboxypeptidases, hydrolase; 2.10A {Trypanosoma
           cruzi} (A:1-97)
          Length = 97

 Score = 28.6 bits (64), Expect = 2.6
 Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
                L   +H  +       L+++ ++ V D         AN+ ++R+ ++    L
Sbjct: 44  AAMAELQLHMHDTITAPKIRALIEEAEKSVGDL---EKLQRANLREMRRAWELENLL 97


>3eof_A Putative oxidoreductase; YP_213212.1, structural genomics,
           joint center for structural genomics, JCSG; HET: FMN;
           1.99A {Bacteroides fragilis nctc 9343} (A:)
          Length = 248

 Score = 28.0 bits (61), Expect = 3.6
 Identities = 17/169 (10%), Positives = 40/169 (23%), Gaps = 29/169 (17%)

Query: 39  YWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC------SFIESVQRL 92
              C    +      + N            +       L+   G       +   + Q +
Sbjct: 82  RRFCKYCQERNAVPGYGNLXSFLNAAXDTLLVAQTFCTLAEEAGLGICYLGTTTYNPQXI 141

Query: 93  AAIAGVP--------LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNAR------DK 138
                +P        + V  P    K+  +  +  +I    + +H              +
Sbjct: 142 IDALHLPELVFPITTVTVGYPAESPKQVDRLPIEGIIHE--ESYHDYTAEDINRLYAYKE 199

Query: 139 RLHYYLDERGID-------SHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
            L         +             +          +L + LR++GF +
Sbjct: 200 SLPENKLFIEENQKETLPQVFTDVRYTKKDNEFXSENLLKVLRRQGFXD 248


>1ydx_A Type I restriction enzyme specificity protein Mg438; type-I
           HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium}
           (A:221-230,A:310-364)
          Length = 65

 Score = 28.1 bits (62), Expect = 3.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 251 FFGALNYLQKSIRKDVRRNSSSFIIL 276
           F+ AL YLQK I++  + + S F+ L
Sbjct: 16  FYCALKYLQKDIKERXKSDDSPFLSL 41


>1muk_A Minor core protein lambda 3; single subunit polymerase fold,
           fingers, PALM, thumb, right hand configuration, viral
           protein; 2.50A {Reovirus SP}
           (A:881-931,A:1026-1107,A:1196-1267)
          Length = 205

 Score = 27.7 bits (61), Expect = 4.6
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 254 ALNYLQKSIRKDVRRNSSSFIILVEGYMDV-LSLCQA 289
            L  + +++ +  R + SSF  L+E Y+ V   +C+A
Sbjct: 56  ELAEMDETLMRARRHSYSSFSKLLEAYLLVKWRMCEA 92


>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione
           biosynthesis, beta-hairpin, redox regulation; HET: GLU;
           2.09A {Brassica juncea} PDB: 2gwc_A* (A:1-422)
          Length = 422

 Score = 27.1 bits (59), Expect = 6.9
 Identities = 15/117 (12%), Positives = 32/117 (27%), Gaps = 5/117 (4%)

Query: 41  ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA---- 96
           A  PF + K   F    S  +              F  +     +++    +        
Sbjct: 211 ANSPFTEGKPNGFLSMRSHIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFAYRN 270

Query: 97  GVPLPVVDPKIEKKEKIQTDLIRLIEVATD-FFHHSLKNARDKRLHYYLDERGIDSH 152
           G  +        +    +   +       + + +H      + RL  Y++ RG D  
Sbjct: 271 GKYVDCTGMTFRQFLAGKLPCLPGELPTYNDWENHLTTIFPEVRLKRYMEMRGADGG 327


>1ka2_A M32 carboxypeptidase; hexxh motif, M32 family,
           metallopeptidase; 2.20A {Pyrococcus furiosus} (A:1-100)
          Length = 100

 Score = 27.1 bits (60), Expect = 7.4
 Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 4/57 (7%)

Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
             +  L    H+ L    F  L+++         L +      +  + +  + A A 
Sbjct: 48  VAQGELSVLSHELLLHPEFVNLVEKAKGL---ENL-NEYERGIVRVLDRSIRIARAF 100


>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous
           activities, enzyme evolution, hyperthermophilic,
           lactonase, hydrolase; HET: KCX GOL HT5; 2.05A
           {Sulfolobus solfataricus} PDB: 2vc5_A* (A:)
          Length = 314

 Score = 26.6 bits (57), Expect = 8.6
 Identities = 14/111 (12%), Positives = 26/111 (23%)

Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
               E     K  I H+ D     Y  +           +Y  +         +      
Sbjct: 184 ILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLI 243

Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
           + G S ++M S      +    +  E    L       ++ E         
Sbjct: 244 KDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRN 294


>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil,
           actin capping, actin-binding, alternative splicing,
           calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
           (A:140-323)
          Length = 184

 Score = 26.7 bits (58), Expect = 9.4
 Identities = 14/143 (9%), Positives = 38/143 (26%), Gaps = 17/143 (11%)

Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
                  +  DI+   NE+ + W  L      ++  L +   +        +L+      
Sbjct: 40  QAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLW---- 95

Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
                +     +    +  +       L    + +  + +            G+      
Sbjct: 96  -----MEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGK------ 144

Query: 617 LISILHEVHIQIHQIESQEAMIE 639
             S+L   H    +I+ +   + 
Sbjct: 145 --SLLARKHYASEEIKEKLLQLT 165


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.322    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0492    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 5,031,314
Number of extensions: 236517
Number of successful extensions: 951
Number of sequences better than 10.0: 1
Number of HSP's gapped: 934
Number of HSP's successfully gapped: 46
Length of query: 648
Length of database: 4,956,049
Length adjustment: 94
Effective length of query: 554
Effective length of database: 1,778,379
Effective search space: 985221966
Effective search space used: 985221966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.3 bits)