RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62] (648 letters) >1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein; HET: DNA; 1.60A {Escherichia coli} (A:1-145) Length = 145 Score = 152 bits (386), Expect = 1e-37 Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 4/149 (2%) Query: 95 IAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAI 154 + G + L +L++ F+ SL+ YL++RG+ I Sbjct: 1 MRGSHHH--HHHGSGSMHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVI 58 Query: 155 EMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR 214 F +G+AP ++ + + + +I+AG+L+ D SYDRFR R++FPIR R Sbjct: 59 ARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQG-RSYDRFRERVMFPIRDKR 117 Query: 215 GQVIAFGGRTLSKGESVKYLNSPETILFH 243 G+VI FGGR L KYLNSPET +FH Sbjct: 118 GRVIGFGGRVLGNDTP-KYLNSPETDIFH 145 >2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:96-224) Length = 129 Score = 134 bits (338), Expect = 4e-32 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 6/135 (4%) Query: 107 IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSR 166 +EK K + + ++ DF+ SL R+ Y+ RGID F LGYAP S Sbjct: 1 LEKISKDEK-VYVALDRVCDFYRESLLKNREAS--EYVKSRGIDPKVARKFDLGYAPSSE 57 Query: 167 YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 +L + L++ E + LL D F R++ PI+ RG+VI FGGR + Sbjct: 58 -ALVKVLKENDLLEAYLETKNLLSPTKGV--YRDLFLRRVVIPIKDPRGRVIGFGGRRIV 114 Query: 227 KGESVKYLNSPETIL 241 + +S KY+NSP++ + Sbjct: 115 EDKSPKYINSPDSRV 129 >1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein; HET: DNA; 1.60A {Escherichia coli} (A:146-285) Length = 140 Score = 126 bits (318), Expect = 7e-30 Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 10/148 (6%) Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 KG+ LY + A + R +++VEGYMDV++L Q G+ V+SLGT+ T Sbjct: 1 KGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLGTSTT 50 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ + Sbjct: 51 ADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLV 110 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETE 391 R GK AFE + +++PL L+ Sbjct: 111 RKEGKEAFEARMEQAMPLSAFLFNSLMP 138 >2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:225-349) Length = 125 Score = 117 bits (295), Expect = 3e-27 Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 13/137 (9%) Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KG+NL+ + A Y+++ ILVEGY D+L L G++NVV+ LGTA Sbjct: 1 FKKGENLFGLYEAKEYIKEEGF----------AILVEGYFDLLRLFSEGIRNVVAPLGTA 50 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT+ Q LL K + ++ + +DGDD G +A AI L+L G V V L G DPD Sbjct: 51 LTQNQANLLSKFTKKVYILYDGDDAGRKAMKSAIPLLLSA---GVEVYPVYLPEGYDPDE 107 Query: 362 FIRCYGKTAFEKLIVES 378 FI+ +GK +LI S Sbjct: 108 FIKEFGKEELRRLINSS 124 >1t6t_1 Putative protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.80A {Aquifex aeolicus VF5} (1:) Length = 118 Score = 109 bits (275), Expect = 7e-25 Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 23/135 (17%) Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 K N K++++ S +ILVEG D +L + ++NV+ G + Sbjct: 3 KEPRNLSEW--------IKELKKASREAVILVEGKNDKKALSKFSIKNVIDLSGKRYADV 54 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 L K +++L FD D G R K +L L S+G D R Sbjct: 55 VDXLEGKW-EKVILLFDLDTHGERINQKXKEL--------------LSSQGFLVDENFRN 99 Query: 366 YGKTAFEKLIVESLP 380 + K I E Sbjct: 100 FLKKWNIIHIEEING 114 >2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} (A:) Length = 119 Score = 98.0 bits (244), Expect = 3e-21 Identities = 14/119 (11%), Positives = 33/119 (27%), Gaps = 19/119 (15%) Query: 274 IILVEGYMDVLSLCQAGVQNVVSSL-GTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRA 330 +I+VEG D + + VV +++ +L L + L D D+ G + Sbjct: 7 VIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKL 66 Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRG---------EDPDSFIRCYGKTAFEKLIVESLP 380 + + + + R + + ++ Sbjct: 67 R-RQFRRMFPE------AEHLYIDRAYREVAAAPIWHLAQVLLRARFDVRIESLMRGRG 118 >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} (A:75-203) Length = 129 Score = 95.0 bits (236), Expect = 2e-20 Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 26/143 (18%) Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS---SLGTAL 302 L+ N I++ EG +D+L++ + G + Sbjct: 2 DALFGKHLW--------------NGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASA 47 Query: 303 TEYQLRLLWKLSP---RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 + ++ +I+L FD D+ G +A +A ++P +V +L +D Sbjct: 48 AKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQ-----VLPAGKVRVAVLP-CKDA 101 Query: 360 DSFIRCYGKTAFEKLIVESLPLV 382 + + + + P + Sbjct: 102 NECHLNGHDREIMEQVWNAGPWI 124 >1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} (A:138-255) Length = 118 Score = 90.4 bits (224), Expect = 6e-19 Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 26/136 (19%) Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV---SSLGTAL 302 L+ N I++ EG +D+L++ + G + Sbjct: 2 DALFGKHLW--------------NGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASA 47 Query: 303 TEYQLRLLWKLSP---RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 + ++ +I+L FD D+ G +A +A ++P +V V + +D Sbjct: 48 AKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQ-----VLPAGKV-RVAVLPCKDA 101 Query: 360 DSFIRCYGKTAFEKLI 375 + + + Sbjct: 102 NECHLNGHDREIMEQV 117 >1d0q_A DNA primase; zinc-binding motif, protein; HET: DNA; 1.71A {Bacillus stearothermophilus} (A:23-69) Length = 47 Score = 85.0 bits (211), Expect = 3e-17 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 5/52 (9%) Query: 21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72 IG+YV R+ N Y+ CPFH EKTPSF + K ++CF C G+ Sbjct: 1 IGEYVQLKRQGRN-----YFGLCPFHGEKTPSFSVSPEKQIFHCFGCGAGGN 47 >2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:20-66) Length = 47 Score = 83.9 bits (208), Expect = 5e-17 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Query: 21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72 I +Y++ ++ +N Y CPFH + TPSF+ + SK + CF C V GD Sbjct: 1 ISEYLNLEKVGSN-----YRTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGD 47 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 36.7 bits (84), Expect = 0.008 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 9/55 (16%) Query: 530 KYFLPEEIHQRLCERGFGELLKQL------DRQVRDAGLWSATTEANIVDVRQGY 578 K F+ +E L ++G G+ ++ + Q+ L+SAT + + + Sbjct: 261 KVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQI---VLFSATFSERVEKYAERF 312 Score = 35.1 bits (80), Expect = 0.026 Identities = 16/149 (10%), Positives = 43/149 (28%), Gaps = 14/149 (9%) Query: 100 LPVVDPKIEKKEKIQTDLIR-LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHA-IEMF 157 L ++ K Q + E+A + + + + Sbjct: 177 LTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDA 236 Query: 158 KLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR---NRLIFPIRSSR 214 ++ + + ++++ I +L + DN R+ + + Sbjct: 237 QIVIGTPGT--VMDLMKRRQLDARDIKVF-VLDEADN-MLDQQGLGDQSMRIKHLLPRNT 292 Query: 215 GQVIAFGGRTLSKG-ESV--KYLNSPETI 240 Q++ F T S+ E ++ + I Sbjct: 293 -QIVLFSA-TFSERVEKYAERFAPNANEI 319 >3hoa_A Thermostable carboxypeptidase 1; proline-rich loop, hydrolase; 2.10A {Thermus thermophilus HB27} PDB: 1wgz_A (A:1-100) Length = 100 Score = 32.5 bits (74), Expect = 0.17 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 13/98 (13%) Query: 499 QEQYQELADIRYDNNELQKLWSFLFSD------------FVEQKYFLPEEIHQRLCERGF 546 + YQ L + + + L L + D Q L +HQR+ + Sbjct: 4 EAAYQNLLEFQRETAYLASLGALAAWDQRTMIPKKGHEHRARQMAALARLLHQRMTDPRI 63 Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 GE L++++ + N+ + RQ Y++A A+ Sbjct: 64 GEWLEKVEGSPLVQDP-LSDAAVNVREWRQAYERARAI 100 >1d0q_A DNA primase; zinc-binding motif, protein; HET: DNA; 1.71A {Bacillus stearothermophilus} (A:1-22,A:70-103) Length = 56 Score = 31.5 bits (71), Expect = 0.37 Identities = 14/31 (45%), Positives = 20/31 (64%) Query: 74 LSFLSALLGCSFIESVQRLAAIAGVPLPVVD 104 +FL + G F+E+ +RLAA AGV L V + Sbjct: 24 FTFLMDIEGIPFVEAAKRLAAKAGVDLSVYE 54 >3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomics, protein structure initiative; 2.35A {Lactobacillus reuteri 100-23} (A:1-107) Length = 107 Score = 29.7 bits (67), Expect = 1.2 Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 21/81 (25%) Query: 106 KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165 ++ K ++ I I A A + L Y L Y + Sbjct: 39 RLMKGTELDEKQIAAIATADQQ-----AKAYSRMLDY----------------LSYQMRT 77 Query: 166 RYSLREHLRQKGFSEEKIIEA 186 + + L++ EE + Sbjct: 78 ESDIVKKLKEIDTPEEFVEPI 98 >1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} (A:) Length = 150 Score = 29.4 bits (65), Expect = 1.3 Identities = 13/72 (18%), Positives = 19/72 (26%) Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 + + S L F K E +G +W N +R S Sbjct: 77 FKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSWWMLNPEGGKSGKAPRRRAAS 136 Query: 470 SLVKGKLSKKPS 481 KL + S Sbjct: 137 MDSSSKLLRGRS 148 >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor protein; HET: ADP; 3.25A {Neurospora crassa} (A:) Length = 443 Score = 29.1 bits (63), Expect = 1.7 Identities = 17/133 (12%), Positives = 30/133 (22%), Gaps = 7/133 (5%) Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445 +R E + N L I + D K + + Sbjct: 313 GQRLREGSNINKS------LTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVP 366 Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS-LREAALLLTLINHPAILQEQYQE 504 Y G S+ M + + + S LR A + + Q Sbjct: 367 YRDSVLTWLLKDSLGGNSKTAMIACISPTDYDETLSTLRYADQAKRIRTRAVVNQVDGVS 426 Query: 505 LADIRYDNNELQK 517 A+ + Sbjct: 427 AAERDAQIPSIVH 439 >3hq2_A Bacillus subtilis M32 carboxypeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc; 2.90A {Bacillus subtilis} (A:1-157) Length = 157 Score = 29.0 bits (65), Expect = 1.9 Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 25/125 (20%) Query: 499 QEQYQELADIRYDNNELQKLWSFLFSD------------FVEQKYFLPEEIHQRLCERGF 546 +E D+ + + + + D E L +I Sbjct: 4 HTYEKEFFDLLKRISHYSEAVALMHWDSRTGAPKNGSEDRAESIGQLSTDIFNIQTSDRM 63 Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606 EL+ L + D S T+ + ++ Y++ + E K+ + Sbjct: 64 KELIDVLYERFDDL---SEDTKKAVELAKKEYEENKKI----------PEAEYKEYVILC 110 Query: 607 AKGEA 611 +K E Sbjct: 111 SKAET 115 >3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Lactobacillus salivarius UCC118} (A:1-64) Length = 64 Score = 28.8 bits (65), Expect = 2.1 Identities = 8/28 (28%), Positives = 12/28 (42%) Query: 159 LGYAPDSRYSLREHLRQKGFSEEKIIEA 186 L Y +R + + LR E+ I E Sbjct: 28 LSYQLRTRKEVEDKLRSLDIHEDYISEI 55 >3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of metallocarboxypeptidases, hydrolase; 2.10A {Trypanosoma cruzi} (A:1-97) Length = 97 Score = 28.6 bits (64), Expect = 2.6 Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 3/57 (5%) Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 L +H + L+++ ++ V D AN+ ++R+ ++ L Sbjct: 44 AAMAELQLHMHDTITAPKIRALIEEAEKSVGDL---EKLQRANLREMRRAWELENLL 97 >3eof_A Putative oxidoreductase; YP_213212.1, structural genomics, joint center for structural genomics, JCSG; HET: FMN; 1.99A {Bacteroides fragilis nctc 9343} (A:) Length = 248 Score = 28.0 bits (61), Expect = 3.6 Identities = 17/169 (10%), Positives = 40/169 (23%), Gaps = 29/169 (17%) Query: 39 YWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC------SFIESVQRL 92 C + + N + L+ G + + Q + Sbjct: 82 RRFCKYCQERNAVPGYGNLXSFLNAAXDTLLVAQTFCTLAEEAGLGICYLGTTTYNPQXI 141 Query: 93 AAIAGVP--------LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNAR------DK 138 +P + V P K+ + + +I + +H + Sbjct: 142 IDALHLPELVFPITTVTVGYPAESPKQVDRLPIEGIIHE--ESYHDYTAEDINRLYAYKE 199 Query: 139 RLHYYLDERGID-------SHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 L + + +L + LR++GF + Sbjct: 200 SLPENKLFIEENQKETLPQVFTDVRYTKKDNEFXSENLLKVLRRQGFXD 248 >1ydx_A Type I restriction enzyme specificity protein Mg438; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} (A:221-230,A:310-364) Length = 65 Score = 28.1 bits (62), Expect = 3.8 Identities = 11/26 (42%), Positives = 17/26 (65%) Query: 251 FFGALNYLQKSIRKDVRRNSSSFIIL 276 F+ AL YLQK I++ + + S F+ L Sbjct: 16 FYCALKYLQKDIKERXKSDDSPFLSL 41 >1muk_A Minor core protein lambda 3; single subunit polymerase fold, fingers, PALM, thumb, right hand configuration, viral protein; 2.50A {Reovirus SP} (A:881-931,A:1026-1107,A:1196-1267) Length = 205 Score = 27.7 bits (61), Expect = 4.6 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Query: 254 ALNYLQKSIRKDVRRNSSSFIILVEGYMDV-LSLCQA 289 L + +++ + R + SSF L+E Y+ V +C+A Sbjct: 56 ELAEMDETLMRARRHSYSSFSKLLEAYLLVKWRMCEA 92 >2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, redox regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A* (A:1-422) Length = 422 Score = 27.1 bits (59), Expect = 6.9 Identities = 15/117 (12%), Positives = 32/117 (27%), Gaps = 5/117 (4%) Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA---- 96 A PF + K F S + F + +++ + Sbjct: 211 ANSPFTEGKPNGFLSMRSHIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFAYRN 270 Query: 97 GVPLPVVDPKIEKKEKIQTDLIRLIEVATD-FFHHSLKNARDKRLHYYLDERGIDSH 152 G + + + + + + +H + RL Y++ RG D Sbjct: 271 GKYVDCTGMTFRQFLAGKLPCLPGELPTYNDWENHLTTIFPEVRLKRYMEMRGADGG 327 >1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase; 2.20A {Pyrococcus furiosus} (A:1-100) Length = 100 Score = 27.1 bits (60), Expect = 7.4 Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 4/57 (7%) Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + L H+ L F L+++ L + + + + + A A Sbjct: 48 VAQGELSVLSHELLLHPEFVNLVEKAKGL---ENL-NEYERGIVRVLDRSIRIARAF 100 >2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* (A:) Length = 314 Score = 26.6 bits (57), Expect = 8.6 Identities = 14/111 (12%), Positives = 26/111 (23%) Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 E K I H+ D Y + +Y + + Sbjct: 184 ILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLI 243 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509 + G S ++M S + + E L ++ E Sbjct: 244 KDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRN 294 >3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens} (A:140-323) Length = 184 Score = 26.7 bits (58), Expect = 9.4 Identities = 14/143 (9%), Positives = 38/143 (26%), Gaps = 17/143 (11%) Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 + DI+ NE+ + W L ++ L + + +L+ Sbjct: 40 QAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLW---- 95 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 + + + + L + + + + G+ Sbjct: 96 -----MEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGK------ 144 Query: 617 LISILHEVHIQIHQIESQEAMIE 639 S+L H +I+ + + Sbjct: 145 --SLLARKHYASEEIKEKLLQLT 165 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.139 0.413 Gapped Lambda K H 0.267 0.0492 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 5,031,314 Number of extensions: 236517 Number of successful extensions: 951 Number of sequences better than 10.0: 1 Number of HSP's gapped: 934 Number of HSP's successfully gapped: 46 Length of query: 648 Length of database: 4,956,049 Length adjustment: 94 Effective length of query: 554 Effective length of database: 1,778,379 Effective search space: 985221966 Effective search space used: 985221966 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (26.3 bits)