RPSBLAST alignment of GI: 254780834 and protein with PDBid: 1nui

>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2 Length = 255

 Score = 64.2 bits (155), Expect = 8e-11
 Identities = 36/340 (10%), Positives = 73/340 (21%), Gaps = 112/340 (32%)

Query: 49  KTPSFHCNDSKGF-------YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101
             P  +C  S G         +C+ C                                  
Sbjct: 14  HIPCDNCGSSDGNSLFSDGHTFCYVCEKWTA----------------------------- 44

Query: 102 VVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGY 161
                   ++  +    R         ++          +  L  RGI     +      
Sbjct: 45  ------GNEDTKERASKRKPSGGKPGTYNVWNFGESNGRYSALTARGISKETCQKAGYWI 98

Query: 162 APDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFG 221
                                               +        +   R   G +++  
Sbjct: 99  ------------------------------------AKVDGVMYQVADYRDQNGNIVSQK 122

Query: 222 GRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM 281
            R   K                  K+   F   L    K             I++ EG +
Sbjct: 123 VRDKDK----------NFKTTGSHKSDALFGKHLWNGGK------------KIVVTEGEI 160

Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP------RIVLCFDGDDPGLRAAYKAI 335
           D+L++ +                   +             +I+L FD D+ G +A  +A 
Sbjct: 161 DMLTVMELQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAA 220

Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375
                 ++P  +V   +L   +D +            + +
Sbjct: 221 Q-----VLPAGKVRVAVLP-CKDANECHLNGHDREIMEQV 254