RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus
Liberibacter asiaticus str. psy62]
(648 letters)
>d1dd9a_ e.13.1.1 (A:) DNA primase DnaG catalytic core {Escherichia
coli [TaxId: 562]}
Length = 314
Score = 194 bits (494), Expect = 1e-50
Identities = 110/316 (34%), Positives = 175/316 (55%), Gaps = 12/316 (3%)
Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176
L +L++ F+ SL+ YL++RG+ I F +G+AP ++ +
Sbjct: 2 LYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGN 61
Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236
+ + +I+AG+L+ D SYDRFR R++FPIR RG+VI FGGR L KYLNS
Sbjct: 62 PENRQSLIDAGMLVTNDQG-RSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDT-PKYLNS 119
Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296
PET +FHKG+ LY + A + +++VEGYMDV++L Q G+ V+
Sbjct: 120 PETDIFHKGRQLYGLYEAQQD----------NAEPNRLLVVEGYMDVVALAQYGINYAVA 169
Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356
SLGT+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L G
Sbjct: 170 SLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDG 229
Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416
EDPD+ +R GK AFE + +++PL L+ +TPD RA L I+ +
Sbjct: 230 EDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVP 289
Query: 417 DQKLRYYYSQAIRDRL 432
+ LR Y Q + ++L
Sbjct: 290 GETLRIYLRQELGNKL 305
>d1t6t1_ c.136.1.1 (1:) Hypothetical protein aq_2086 {Aquifex
aeolicus [TaxId: 63363]}
Length = 108
Score = 95.8 bits (238), Expect = 1e-20
Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 22/129 (17%)
Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
+NL + K++++ S +ILVEG D +L + ++NV+ G
Sbjct: 2 RNLSEW-----------IKELKKASREAVILVEGKNDKKALSKFSIKNVIDLSGKRYA-D 49
Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
+ +L +++L FD D G R K +L+ G V+ E+ +F++
Sbjct: 50 VVDMLEGKWEKVILLFDLDTHGERINQKMKELLSSQ---GFLVD-------ENFRNFLKK 99
Query: 366 YGKTAFEKL 374
+ E++
Sbjct: 100 WNIIHIEEI 108
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 102
Score = 94.6 bits (235), Expect = 2e-20
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62
P + I+ + + I ++IG+YV R+ N Y+ CPFH EKTPSF + K +
Sbjct: 4 IPEETIEAIRRGVDIVDVIGEYVQLKRQGRN-----YFGLCPFHGEKTPSFSVSPEKQIF 58
Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD 104
+CF C G+ +FL + G F+E+ +RLAA AGV L V +
Sbjct: 59 HCFGCGAGGNAFTFLMDIEGIPFVEAAKRLAAKAGVDLSVYE 100
>d1nuia1 e.13.1.2 (A:64-255) Primase fragment of primase-helicase
protein {Bacteriophage T7 [TaxId: 10760]}
Length = 192
Score = 80.7 bits (198), Expect = 3e-16
Identities = 29/211 (13%), Positives = 61/211 (28%), Gaps = 41/211 (19%)
Query: 171 EHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230
L +G S+E +AG I + + R G +++ R K
Sbjct: 16 SALTARGISKETCQKAGYWI-------AKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFK 68
Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290
+ + + N I++ EG +D+L++ +
Sbjct: 69 TTGSHKSDALFGKHLWNGGKK----------------------IVVTEGEIDMLTVMELQ 106
Query: 291 VQNVVSSLGTALTEYQLRLLW------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344
+ +I+L FD D+ G +A +A ++P
Sbjct: 107 DCKYPVVSLGHGASAAKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQ-----VLP 161
Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375
+V +L +D + + +
Sbjct: 162 AGKVRVAVLP-CKDANECHLNGHDREIMEQV 191
>d2fcja1 c.136.1.1 (A:1-114) Hypothetical protein RBSTP2199
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 114
Score = 67.2 bits (164), Expect = 4e-12
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 274 IILVEGYMDVLSLCQAGVQNVVS-SLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRA 330
+I+VEG D + + VV +++ +L L + L D D+ G +
Sbjct: 7 VIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKL 66
Query: 331 AYKAIDLV 338
+ +
Sbjct: 67 RRQFRRMF 74
>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 497
Score = 29.6 bits (66), Expect = 0.78
Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587
+ L H+ L F L+++ + + + + + + A A
Sbjct: 46 VAQGELSVLSHELLLHPEFVNLVEKA----KGLENLNEYERGIVRVLDRSIRIARAFPPE 101
Query: 588 F 588
F
Sbjct: 102 F 102
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens
[TaxId: 34413]}
Length = 210
Score = 29.4 bits (66), Expect = 0.89
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 11/48 (22%)
Query: 39 YWACCPFH---DEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC 83
YW CC +K P FSC+ ++ A GC
Sbjct: 8 YWDCCKPSCGWAKKAPVNQP--------VFSCNANFQRITDFDAKSGC 47
>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 200
Score = 28.7 bits (64), Expect = 1.6
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 13/89 (14%)
Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV--------RQGYQQA 581
+ H + E F + L E I D+ GY+
Sbjct: 46 DHAFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEYVIGDMISPFKSVVGGGYKTV 105
Query: 582 -----LALYKRFRLLSRQKEEIEKQIAQV 605
A++ RF L E++ +I +
Sbjct: 106 EKRLEAAVHLRFGLPPHASRELKDRIKKA 134
>d2rdza1 a.138.1.3 (A:38-477) Cytochrome c nitrite reductase
{Escherichia coli [TaxId: 562]}
Length = 440
Score = 27.9 bits (61), Expect = 2.9
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 88 SVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117
+ RL A G+ + P I KEK Q +
Sbjct: 378 KLARLLATKGITHEIQIPDISTKEKAQQAI 407
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter
capsulatus [TaxId: 1061]}
Length = 160
Score = 27.7 bits (61), Expect = 3.3
Identities = 13/113 (11%), Positives = 30/113 (26%), Gaps = 9/113 (7%)
Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589
K E I + + L+ L + + LA
Sbjct: 42 KKSREESIEEMGHADKIIARILFLEGHPNLQKLDPLRIGEGPRET---LECDLAGEHDAL 98
Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642
+ + G+ I S++ + + +E+Q ++ + G
Sbjct: 99 ------KLYREARDYCAEVGDIVSKNIFESLITDEEGHVDFLETQISLYDRLG 145
>d1ll7a1 c.1.8.5 (A:36-292,A:355-427) Chitinase 1 {Fungus
(Coccidioides immitis) [TaxId: 5501]}
Length = 330
Score = 26.7 bits (58), Expect = 5.4
Identities = 8/63 (12%), Positives = 17/63 (26%)
Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64
+ F L + G +DW + D+ E ++ G +
Sbjct: 113 KKFADTSLKLMKDLGFDGIDIDWQYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFL 172
Query: 65 FSC 67
+
Sbjct: 173 LTI 175
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 26.9 bits (58), Expect = 5.9
Identities = 17/151 (11%), Positives = 38/151 (25%), Gaps = 13/151 (8%)
Query: 367 GKTAFEKLIVESL--PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424
GK+ + + ++L L+D E + E + + L +
Sbjct: 13 GKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHD 72
Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484
+G+ + + + + + +P L
Sbjct: 73 GVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGN-----------TVRPLLAG 121
Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNEL 515
A Y+ +A +R D N
Sbjct: 122 PDRAEKYRALMAKRAPLYRRVATMRVDTNRR 152
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 52
Score = 26.7 bits (59), Expect = 6.2
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 53 FHCNDSKGFYYCFSCHVKGDH 73
+HC + + C +C+ H
Sbjct: 20 WHCTVCEDYDLCINCYNTKSH 40
>d1f5va_ d.90.1.1 (A:) Oxygen-insensitive NAD(P)H nitroreductase
{Escherichia coli, major form, NfsA [TaxId: 562]}
Length = 240
Score = 26.7 bits (58), Expect = 6.5
Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 134 NARDKRLHYYLDERGIDSHAI---EMFKLGYAPDSRYSLREHLRQKGF 178
D++L Y RG ++ + + +SR + ++L ++G+
Sbjct: 190 AQYDEQLAEYYLTRGSNNRRDTWSDHIRRTIIKESRPFILDYLHKQGW 237
>d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease
virus [TaxId: 12110]}
Length = 476
Score = 26.5 bits (58), Expect = 7.2
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 56 NDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-PKIE--KKEK 112
+ + G + +G + F + +G +E+ +L K E EK
Sbjct: 114 DTAPGLPWALQGKRRGALIDFENGTVGPE-VEAALKLMEKREYKFACQTFLKDEIRPMEK 172
Query: 113 IQTDLIRLIEVA 124
++ R+++V
Sbjct: 173 VRAGKTRIVDVL 184
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein
2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 26.1 bits (57), Expect = 8.0
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 53 FHCNDSKGFYYCFSCHVKGDHLS 75
+ C + ++ C C HLS
Sbjct: 40 YKCTECIEYHLCQECFDSYCHLS 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.413
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,483,822
Number of extensions: 121239
Number of successful extensions: 454
Number of sequences better than 10.0: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 29
Length of query: 648
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 557
Effective length of database: 1,158,166
Effective search space: 645098462
Effective search space used: 645098462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.1 bits)