HHsearch alignment for GI: 254780836 and conserved domain: COG0030
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].
Probab=95.41 E-value=0.081 Score=31.32 Aligned_cols=103 Identities=10% Similarity=0.076 Sum_probs=65.9
Q ss_pred CCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH
Q ss_conf 76657536-81799999999731784011013877640311766540468999999999853100533322550466667
Q gi|254780836|r 171 SEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 (674)
Q Consensus 171 ~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~ 249 (674)
T Consensus 5 ~K~~GQnFL~d~~v~~kIv~~a----------~~~~~d~VlEIGpG~GaLT-~~---Ll~---~~-----~~v~aiEiD~ 62 (259)
T COG0030 5 NKRLGQNFLIDKNVIDKIVEAA----------NISPGDNVLEIGPGLGALT-EP---LLE---RA-----ARVTAIEIDR 62 (259)
T ss_pred CCCCCCCCCCCHHHHHHHHHHC----------CCCCCCEEEEECCCCCHHH-HH---HHH---HC-----CEEEEEEECH
T ss_conf 8776645414787999999855----------7899986999789877889-99---996---06-----9579999688
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 8899999998980887533456666823475457999866418999816856765
Q gi|254780836|r 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674)
Q Consensus 250 ~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674)
T Consensus 63 ~l~~~L~~~~~----~-----~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~Is 108 (259)
T COG0030 63 RLAEVLKERFA----P-----YDNLTVINGDALKFDFPSLAQPYKVVANLPYNIS 108 (259)
T ss_pred HHHHHHHHHHC----C-----CCCEEEEECCHHCCCCHHHCCCCEEEECCCCCCC
T ss_conf 99999997506----5-----6655999472424751351578889980897656