HHsearch alignment for GI: 254780836 and conserved domain: COG2263
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis].
Probab=98.41 E-value=1.4e-06 Score=62.46 Aligned_cols=166 Identities=17% Similarity=0.195 Sum_probs=96.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674)
Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674)
T Consensus 21 LEQY~Tp~~~Aa~il~~a~~~-------g~l~g~~V~DlG~GTG~La~ga-~~l---G-------a~~V~~vdiD~~a~e 82 (198)
T COG2263 21 LEQYRTPAPLAAYILWVAYLR-------GDLEGKTVLDLGAGTGILAIGA-ALL---G-------ASRVLAVDIDPEALE 82 (198)
T ss_pred CEECCCCHHHHHHHHHHHHHC-------CCCCCCEEEECCCCCCHHHHHH-HHC---C-------CCEEEEEECCHHHHH
T ss_conf 333479848999999999873-------8847888888278847889999-862---9-------717999936989999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 99999898088753345666682347545799986641899981685676531000111234422666653577774770
Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 (674)
Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sd 333 (674)
T Consensus 83 i~r~N~~~l~g~v~--------f~~~dv----~~~~~~~dtvimNPPFG~~-~-----------r--------------h 124 (198)
T COG2263 83 IARANAEELLGDVE--------FVVADV----SDFRGKFDTVIMNPPFGSQ-R-----------R--------------H 124 (198)
T ss_pred HHHHHHHHHCCCEE--------EEECCH----HHCCCCCCEEEECCCCCCC-C-----------C--------------C
T ss_conf 99988886088469--------998210----1147766669978997322-1-----------3--------------6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCE-----EEEEECCCCCCCCC----CCC
Q ss_conf 659999999996146657880799973897134776443268999999884946-----88831767765578----861
Q gi|254780836|r 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI-----EAIVALPTDLFFRT----NIA 404 (674)
Q Consensus 334 g~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~i-----eaII~LP~~lFynT----gI~ 404 (674)
T Consensus 125 aDr~Fl~~Ale~-------s~vVYsiH~--------a~~-~~f~~~~~~~~G~~v~~~~~~~~~iP~~y~fH~k~~~~I~ 188 (198)
T COG2263 125 ADRPFLLKALEI-------SDVVYSIHK--------AGS-RDFVEKFAADLGGTVTHIERARFPIPRTYPFHRKRVRRIE 188 (198)
T ss_pred CCHHHHHHHHHH-------HHEEEEEEC--------CCC-HHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHEEEEEE
T ss_conf 888999999974-------014787401--------660-7999999885497089999999714765740141255645
Q ss_pred EEEEEEE
Q ss_conf 6999994
Q gi|254780836|r 405 TYLWILS 411 (674)
Q Consensus 405 t~Iwil~ 411 (674)
T Consensus 189 v~i~r~~ 195 (198)
T COG2263 189 VDIFRFE 195 (198)
T ss_pred EEEEEEE
T ss_conf 9999998