HHsearch alignment for GI: 254780836 and conserved domain: COG2813

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].
Probab=98.06  E-value=7.1e-05  Score=51.27  Aligned_cols=109  Identities=19%  Similarity=0.227  Sum_probs=68.7

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             31176654046899999999985310053332255046666788999999989808875334566668234754579998
Q gi|254780836|r  208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF  287 (674)
Q Consensus       208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~  287 (674)
T Consensus       161 ~vlDlGCG~Gvlg~~l----a~~~p~------~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-------~v~~s~~~~~v-~  222 (300)
T COG2813         161 KVLDLGCGYGVLGLVL----AKKSPQ------AKLTLVDVNARAVESARKNLAANGVENT-------EVWASNLYEPV-E  222 (300)
T ss_pred             CEEEECCCCCHHHHHH----HHHCCC------CEEEEEECCHHHHHHHHHHHHHCCCCCC-------EEEEECCCCCC-C
T ss_conf             6887078842999999----986898------7289982669999998876997398763-------79981244665-4


Q ss_pred             CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf             6641899981685676531000111234422666653577774770659999999996146657880799973897
Q gi|254780836|r  288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS  363 (674)
Q Consensus       288 ~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs  363 (674)
T Consensus       223 -~-kfd~IisNPPfh~G-----~~v~~------------------~~~~~ii~~A~~~L~----~gGeL~iVan~~  269 (300)
T COG2813         223 -G-KFDLIISNPPFHAG-----KAVVH------------------SLAQEIIAAAARHLK----PGGELWIVANRH  269 (300)
T ss_pred             -C-CCCEEEECCCCCCC-----CCHHH------------------HHHHHHHHHHHHHHC----CCCEEEEEECCC
T ss_conf             -4-00689848884677-----10167------------------889999999997604----597799997588