HHsearch alignment for GI: 254780836 and conserved domain: PRK00274
>PRK00274 ksgA dimethyladenosine transferase; Reviewed.
Probab=95.75 E-value=0.043 Score=33.13 Aligned_cols=187 Identities=14% Similarity=0.206 Sum_probs=101.4
Q ss_pred HHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999862276657536-8179999999973178401101387764031176654046899999999985310053332
Q gi|254780836|r 161 HLIRRFGSEVSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 (674)
Q Consensus 161 ~LIrkFae~~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~ 239 (674)
T Consensus 4 ~~l~~~~~~~kK~lGQnFL~d~~ii~kIv~~~~----------~~~~d~VlEIGpG~G~-LT~~---Ll~~~-------- 61 (267)
T PRK00274 4 ELLEHYGHRAKKSLGQNFLIDENIIDKIVRAAD----------LQPGDRVLEIGPGLGA-LTEP---LLERA-------- 61 (267)
T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC----------CCCCCEEEEECCCCCH-HHHH---HHHHC--------
T ss_conf 999876999887778221489899999999608----------9999907996388888-9999---99626--------
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 25504666678899999998980887533456666823475457999--8664189998168567653100011123442
Q gi|254780836|r 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 (674)
Q Consensus 240 ~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~--~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~ 317 (674)
T Consensus 62 ~~v~aiEiD~~l~~~L------~~~-------~~~~ii~~D~L~~~~~~~~~~~~~~vvgNLPY~Iss~----il~~~l~ 124 (267)
T PRK00274 62 AKVTAIEIDRDLAPIL------RET-------DNLTIIEGDALKVDLEELAEGQPLKVVANLPYNISTP----LLFKLLE 124 (267)
T ss_pred CCEEEEECCHHHHHHH------HHC-------CCEEEEECHHHHCCHHHHCCCCCEEEEECCCCHHHHH----HHHHHHH
T ss_conf 8058863688999998------504-------7869996506647867745678727995588303128----9999985
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 26666535777747706599999999961466578807999738971347764432689999998849468883176776
Q gi|254780836|r 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 (674)
Q Consensus 318 ~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~l 397 (674)
T Consensus 125 --~-------~~~~~~~vlmv-QkEv---------A~Ri~-a~p~~k~y-----~~LSv~~q~---~~~~~~~~~V~~~~ 176 (267)
T PRK00274 125 --E-------APPIRDMVLML-QKEV---------AERIV-AKPGSKAY-----GRLSVLLQY---YADVEKVFDVPPSA 176 (267)
T ss_pred --C-------CCCHHHHHHHH-HHHH---------HHHHH-CCCCCCCC-----CHHHHHHHH---HHHEEEEEEECHHH
T ss_conf --4-------75412400111-5877---------77762-47999751-----688999999---86331211576776
Q ss_pred CCC-CCCCEEEEEEECCC
Q ss_conf 557-88616999994688
Q gi|254780836|r 398 FFR-TNIATYLWILSNRK 414 (674)
Q Consensus 398 Fyn-TgI~t~Iwil~k~K 414 (674)
T Consensus 177 F~P~PkVdS~vi~l~p~~ 194 (267)
T PRK00274 177 FYPPPKVDSAVVRLVPKE 194 (267)
T ss_pred CCCCCCCEEEEEEEEECC
T ss_conf 567987417999999789