HHsearch alignment for GI: 254780836 and conserved domain: PRK03522
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed.
Probab=97.17 E-value=0.00089 Score=44.11 Aligned_cols=166 Identities=18% Similarity=0.170 Sum_probs=94.2
Q ss_pred CCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 57536-81799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 174 AEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 174 aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
T Consensus 207 p~sFfQvN~~~~~~L~~~~~----~~~~~~~--~~~vlDlycG~G~~sl~lA~~------------~~~V~gvE~~~~av 268 (375)
T PRK03522 207 PQSFFQTNPAVAAQLYATAR----DWVRELP--PKSMWDLFCGVGGFGLHCATP------------DMQLTGIEISAEAI 268 (375)
T ss_pred CCCCCCCCHHHHHHHHHHHH----HHHHCCC--CCEEEEECCCCCHHHHHHHHC------------CCEEEEEEECHHHH
T ss_conf 53214659999999999999----9863158--978999657853888987641------------78899998459999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999989808875334566668234754579998664189998168567653100011123442266665357777477
Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 (674)
Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~s 332 (674)
T Consensus 269 ~~A~~na~~ngi~nv-------~f~~~d~~~~~~~~~~~~d~vvvDPPR~----------------------G--l~--- 314 (375)
T PRK03522 269 ACAKQSAAELGLTNV-------QFQALDSTQFATAQGEVPELVLVNPPRR----------------------G--IG--- 314 (375)
T ss_pred HHHHHHHHHCCCCCE-------EEEECCHHHHHHHCCCCCCEEEECCCCC----------------------C--CH---
T ss_conf 999999998699876-------9997377888763456897899899977----------------------7--51---
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEE
Q ss_conf 0659999999996146657880799973-897134776443268999999884946888317677655788616999994
Q gi|254780836|r 333 DGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 (674)
Q Consensus 333 dg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~ 411 (674)
T Consensus 315 ---~~~~-~~l~~~~p-----~~IvYVSCnP~TlaR--------Dl~--~L-~gy~-l~~v~~~DmFPqT~HvE~v~lL~ 373 (375)
T PRK03522 315 ---KPLC-DYLSQMAP-----RFILYSSCNAQTMAK--------DLA--HL-PGYR-IERVQLFDMFPHTAHYEVLTLLV 373 (375)
T ss_pred ---HHHH-HHHHHCCC-----CEEEEEECCHHHHHH--------HHH--HH-CCCE-EEEEEEECCCCCCCCEEEEEEEE
T ss_conf ---9999-99986599-----969999079899999--------988--84-3976-88999953698997189999999
Q ss_pred C
Q ss_conf 6
Q gi|254780836|r 412 N 412 (674)
Q Consensus 412 k 412 (674)
T Consensus 374 R 374 (375)
T PRK03522 374 R 374 (375)
T ss_pred E
T ss_conf 5