HHsearch alignment for GI: 254780836 and conserved domain: PRK05031
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated.
Probab=97.33 E-value=0.001 Score=43.80 Aligned_cols=165 Identities=18% Similarity=0.174 Sum_probs=93.8
Q ss_pred CCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 57536-81799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 174 AEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 174 aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
T Consensus 182 p~sFfQvN~~~~e~l~~~a~----~~~~~~--~~-~vlDLYcG~Gtfsl~LA~~~------------~~V~gVE~~~~aV 242 (363)
T PRK05031 182 ENSFTQPNAAVNEKMLEWAL----DATKGS--KG-DLLELYCGNGNFTLALARNF------------RRVLATEISKPSV 242 (363)
T ss_pred CCCCCCCCHHHHHHHHHHHH----HHHHCC--CC-CEEEEECCCCHHHHHHHHHC------------CEEEEEECCHHHH
T ss_conf 99842479899999999999----976138--98-28986058664269988626------------8799995389999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCC------C---------CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999989808875334566668234754------5---------79998664189998168567653100011123442
Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGST------L---------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 (674)
Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdT------L---------~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~ 317 (674)
T Consensus 243 ~~A~~NA~~N~i~N~~-------fi~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~d~vvvDPPR~--------------- 300 (363)
T PRK05031 243 AAAQYNIAANGIDNVQ-------IIRMSAEEFTQAMNGVREFRRLKGIDLKSYNFSTIFVDPPRA--------------- 300 (363)
T ss_pred HHHHHHHHHCCCCCEE-------EEECCHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEEECCCCC---------------
T ss_conf 9999999986998649-------996589999998734310100124664435586489899988---------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2666653577774770659999999996146657880799973-897134776443268999999884946888317677
Q gi|254780836|r 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 (674)
Q Consensus 318 ~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~ 396 (674)
T Consensus 301 -------G--l~~------~~~-~~i~~~-------~rIVYVSCnP~Tla--------RDl~-~L~~~y~l~~v~--~vD 346 (363)
T PRK05031 301 -------G--LDE------ETL-KLVQNY-------ERILYISCNPETLK--------ENLE-TLSQTHKVERFA--LFD 346 (363)
T ss_pred -------C--CCH------HHH-HHHHCC-------CEEEEEECCHHHHH--------HHHH-HHHHCCEEEEEE--EEC
T ss_conf -------8--749------999-998368-------90999928989999--------9999-987446588999--842
Q ss_pred CCCCCCCCEEEEEEECC
Q ss_conf 65578861699999468
Q gi|254780836|r 397 LFFRTNIATYLWILSNR 413 (674)
Q Consensus 397 lFynTgI~t~Iwil~k~ 413 (674)
T Consensus 347 mFPqT~HvE~valL~rk 363 (363)
T PRK05031 347 QFPYTHHMECGVLLEKK 363 (363)
T ss_pred CCCCCCCEEEEEEEEEC
T ss_conf 69999727899999809