HHsearch alignment for GI: 254780836 and conserved domain: PRK05134

>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional.
Probab=97.04  E-value=0.0068  Score=38.36  Aligned_cols=205  Identities=18%  Similarity=0.166  Sum_probs=95.8

Q ss_pred             HHHHHHHCC---CCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             999986227---66575368179999999973178401101387764031176654046899999999985310053332
Q gi|254780836|r  163 IRRFGSEVS---EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI  239 (674)
Q Consensus       163 IrkFae~~~---~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~  239 (674)
T Consensus         9 i~~F~~la~~WWd~~g~~~~Lh~~N~~R~~~i~~----~~--~~l~G~~ILDVGCG-gG~lse~LAr~-------G----   70 (233)
T PRK05134          9 IAKFSALAARWWDPNGEFKPLHRINPLRLNYIRE----HA--GGLFGKRVLDVGCG-GGILSESMARL-------G----   70 (233)
T ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH----HC--CCCCCCEEEEECCC-CCHHHHHHHHC-------C----
T ss_conf             9999988998479999960788836999999997----51--46689989997558-97112899967-------9----


Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHH-HHHHHHH-
Q ss_conf             25504666678899999998980887533456666823475457999866418999816856765310001-1123442-
Q gi|254780836|r  240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD-AVEKEHK-  317 (674)
Q Consensus       240 ~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~-~v~~e~~-  317 (674)
T Consensus        71 a~VtGID~S~~~I~~Ar~ha~~~~l~i~--------y~~~~~e~l~~~~~~~FDvV~~~EVl--EHV~d~~~~l~~~~rl  140 (233)
T PRK05134         71 ATVTGIDASEENIEVARLHALESGLKID--------YRQITAEELAAEHPGQFDVVTCMEML--EHVPDPASFIRACAKL  140 (233)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCCCE--------EEECCHHHHHHHCCCCEEEEEEEHHH--HHCCCHHHHHHHHHHH
T ss_conf             9799987998999999998564434511--------67514766543057863477442147--7538999999999997


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC---CCCCCCCCCHHHHHHHHHHCCCEEEEEECC
Q ss_conf             26666535777747706599999999961466578807999738971---347764432689999998849468883176
Q gi|254780836|r  318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP---LFNGRAGSGESEIRRWLLENDLIEAIVALP  394 (674)
Q Consensus       318 ~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~---LF~G~agsGEs~IRk~lie~d~ieaII~LP  394 (674)
T Consensus       141 LKPGG~l~lsTiNrt~~S~l~~i~~AEyi---------l~~vP~gTH~w~kFi-----~P~el~~~l~~~~~~---~~~~  203 (233)
T PRK05134        141 VKPGGLVFFSTLNRNLKSYLLAIVGAEYI---------LRMLPKGTHDYKKFI-----KPSELAAWLRQAGLE---VQDI  203 (233)
T ss_pred             HCCCCEEEEECCCCCHHHHHHHHHHHHHH---------HCCCCCCCCCHHHCC-----CHHHHHHHHHHCCCE---EEEE
T ss_conf             38991499972678989999999999888---------604999985866679-----999999999987995---7210


Q ss_pred             CCCCCCCCCCEEEEEEECCC
Q ss_conf             77655788616999994688
Q gi|254780836|r  395 TDLFFRTNIATYLWILSNRK  414 (674)
Q Consensus       395 ~~lFynTgI~t~Iwil~k~K  414 (674)
T Consensus       204 ~G~~ynp~--~~~w~~~~~~  221 (233)
T PRK05134        204 KGLTYNPL--TNRWKLSDDV  221 (233)
T ss_pred             EEEEEECC--CCEEEECCCC
T ss_conf             00799656--7938988999