HHsearch alignment for GI: 254780836 and conserved domain: PRK11933
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed.
Probab=94.15 E-value=0.46 Score=26.40 Aligned_cols=169 Identities=17% Similarity=0.137 Sum_probs=87.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674)
Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674)
T Consensus 90 aG~~yiQe~ssm~~~~~l~~--------~p~pge~VLDlCAAPGGKtt~la~~m~----~-----~G~lvAnd~~~~R~~ 152 (471)
T PRK11933 90 SGLFYIQEASSMLPVAALFA--------DDNAPQRVLDMAAAPGSKTTQIAALMN----N-----QGALVANEYSASRVK 152 (471)
T ss_pred CCEEEEECHHHHHHHHHHCC--------CCCCCCEEEEECCCCCHHHHHHHHHCC----C-----CCEEEEEECCHHHHH
T ss_conf 85499977688557888524--------889999899957785489999999758----9-----966999838899999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCCC-CCC
Q ss_conf 999998980887533456666823475457999866418999816856765--31000111234422666653577-774
Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPG-LPK 330 (674)
Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~g-lP~ 330 (674)
T Consensus 153 ~L~~n~~r~G~~n~-------~vt~~d~~~~~~~~~~~FD~ILvDaPCSG~G~~rk~p~~~---------~~w~~~~~~~ 216 (471)
T PRK11933 153 VLHANISRCGVSNV-------ALTHFDGRVFGAALPEMFDAILLDAPCSGEGTVRKDPDAL---------KNWSPESNLE 216 (471)
T ss_pred HHHHHHHHCCCCCE-------EEEECCHHHHHHHCCCCCCEEEECCCCCCCEEECCCHHHH---------HCCCHHHHHH
T ss_conf 99999997199847-------9993586674032301066799878888873355597576---------4189879999
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 7706599999999961466578807999738971347764432689999998849
Q gi|254780836|r 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 (674)
Q Consensus 331 ~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d 385 (674)
T Consensus 217 ~~~~Q~~iL~~A~~~Lkp----GG~L--VYSTCT~~---peENE-~vv~~~l~~~ 261 (471)
T PRK11933 217 IAATQRELIESAFHALKP----GGTL--VYSTCTLN---REENQ-AVCLWLKETY 261 (471)
T ss_pred HHHHHHHHHHHHHHHCCC----CCEE--EEECCCCC---HHHHH-HHHHHHHHHC
T ss_conf 999999999999987388----9689--99817999---56679-9999999868