HHsearch alignment for GI: 254780836 and conserved domain: PRK11933

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed.
Probab=94.15  E-value=0.46  Score=26.40  Aligned_cols=169  Identities=17%  Similarity=0.137  Sum_probs=87.7

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf             57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r  174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA  253 (674)
Q Consensus       174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya  253 (674)
T Consensus        90 aG~~yiQe~ssm~~~~~l~~--------~p~pge~VLDlCAAPGGKtt~la~~m~----~-----~G~lvAnd~~~~R~~  152 (471)
T PRK11933         90 SGLFYIQEASSMLPVAALFA--------DDNAPQRVLDMAAAPGSKTTQIAALMN----N-----QGALVANEYSASRVK  152 (471)
T ss_pred             CCEEEEECHHHHHHHHHHCC--------CCCCCCEEEEECCCCCHHHHHHHHHCC----C-----CCEEEEEECCHHHHH
T ss_conf             85499977688557888524--------889999899957785489999999758----9-----966999838899999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCCC-CCC
Q ss_conf             999998980887533456666823475457999866418999816856765--31000111234422666653577-774
Q gi|254780836|r  254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPG-LPK  330 (674)
Q Consensus       254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~g-lP~  330 (674)
T Consensus       153 ~L~~n~~r~G~~n~-------~vt~~d~~~~~~~~~~~FD~ILvDaPCSG~G~~rk~p~~~---------~~w~~~~~~~  216 (471)
T PRK11933        153 VLHANISRCGVSNV-------ALTHFDGRVFGAALPEMFDAILLDAPCSGEGTVRKDPDAL---------KNWSPESNLE  216 (471)
T ss_pred             HHHHHHHHCCCCCE-------EEEECCHHHHHHHCCCCCCEEEECCCCCCCEEECCCHHHH---------HCCCHHHHHH
T ss_conf             99999997199847-------9993586674032301066799878888873355597576---------4189879999


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             7706599999999961466578807999738971347764432689999998849
Q gi|254780836|r  331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND  385 (674)
Q Consensus       331 ~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d  385 (674)
T Consensus       217 ~~~~Q~~iL~~A~~~Lkp----GG~L--VYSTCT~~---peENE-~vv~~~l~~~  261 (471)
T PRK11933        217 IAATQRELIESAFHALKP----GGTL--VYSTCTLN---REENQ-AVCLWLKETY  261 (471)
T ss_pred             HHHHHHHHHHHHHHHCCC----CCEE--EEECCCCC---HHHHH-HHHHHHHHHC
T ss_conf             999999999999987388----9689--99817999---56679-9999999868